mRNA_F-distichus_contig105906.502.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105906.502.1
Unique NamemRNA_F-distichus_contig105906.502.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.070e-35
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    4 GMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 228
            GMEKLNRIQSKM EAALLSPENLLLCAPTGAGKTNVAL+ MLHEIGQHR+EDGTIDVD+FK+  VAPMKALVQEV
Sbjct:  524 GMEKLNRIQSKMQEAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 598
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BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A454XRE1_OSTTA (Sec63 Brl domain-domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XRE1_OSTTA)

HSP 1 Score: 115 bits (289), Expect = 2.170e-28
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 228
            +GM+ LNR+QS+++E ALLSPEN+LLCAPTGAGKTNVA+L +LHEIG HRR DGT+D   FK+  VAPMKALV E+
Sbjct:  491 EGMKSLNRVQSRVYECALLSPENMLLCAPTGAGKTNVAVLTILHEIGLHRRRDGTVDTSAFKIVYVAPMKALVSEI 566
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BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A7S0Z8P7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8P7_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 1.030e-27
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 228
            +GM+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTNVA++ +LHE+G HRR DG+ID   FK+  VAPMKALV E+
Sbjct:  498 EGMKSLNRIQSRVYECALLSPENMLLCAPTGAGKTNVAMMTILHEVGLHRRRDGSIDTSAFKIVYVAPMKALVAEI 573
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BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: UPI000CDAD928 (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDAD928)

HSP 1 Score: 103 bits (258), Expect = 3.790e-27
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 225
            +G + LNRIQSK+  AAL S ENLLLCAPTGAGKTNVALL ML EIG+H   DGTI+VD FK+  +APM++LVQE
Sbjct:   36 EGFKTLNRIQSKLFRAALESDENLLLCAPTGAGKTNVALLCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 110
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BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A6J3AHH9_VICPA (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=2 Tax=Artiodactyla TaxID=91561 RepID=A0A6J3AHH9_VICPA)

HSP 1 Score: 103 bits (256), Expect = 4.830e-27
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 225
            +G + LNRIQSK++ AAL + ENLLLCAPTGAGKTNVAL+ ML EIG+H   DGTI+VD FK+  +APM++LVQE
Sbjct:   17 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 91
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BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A4S4L6_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S4L6_OSTLU)

HSP 1 Score: 112 bits (279), Expect = 4.870e-27
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQEV 228
            +GM+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTN A+L +LHE+G HRR DG++D   FK+  VAPMKALV E+
Sbjct:  491 EGMKTLNRIQSRVYECALLSPENMLLCAPTGAGKTNCAMLTILHEVGLHRRRDGSVDTSAFKIVYVAPMKALVAEI 566
[Close]
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 111 bits (278), Expect = 6.640e-27
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 225
            +GM  LNR+QSKM  +AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDG++D+D FK+  VAPMKALVQE
Sbjct:   70 EGMTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 144
[Close]
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.650e-27
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 QGMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 225
            +GM  LNR+QSKM  +AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDG++D+D FK+  VAPMKALVQE
Sbjct:  509 EGMTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 583
[Close]
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: A0A7S0KUK6_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KUK6_MICPS)

HSP 1 Score: 110 bits (275), Expect = 1.690e-26
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    4 GMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 225
            GM+ LNR+QS+++  A+LSPEN+LLCAPTGAGKTNVA+L +LHEIG HR+ DGTID   FK+  VAPMKALV E
Sbjct:  519 GMKSLNRVQSQVYNTAMLSPENMLLCAPTGAGKTNVAMLTILHEIGLHRKPDGTIDTSAFKIVYVAPMKALVAE 592
[Close]
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Match: C1N183_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N183_MICPC)

HSP 1 Score: 110 bits (275), Expect = 1.690e-26
Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    4 GMEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGTIDVDTFKLACVAPMKALVQE 225
            GM+ LNR+QS+++E A+LSPENLLLCAPTGAGKTNVA+L +LHE+  HRR+DG++D+  FK+  VAPMKALV E
Sbjct:  525 GMKSLNRVQSQVYETAMLSPENLLLCAPTGAGKTNVAMLTILHELALHRRQDGSLDLSAFKIVYVAPMKALVAE 598
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105906.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI2.070e-3589.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A454XRE1_OSTTA2.170e-2869.74Sec63 Brl domain-domain-containing protein n=2 Tax... [more]
A0A7S0Z8P7_9CHLO1.030e-2768.42Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
UPI000CDAD9283.790e-2769.33U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A6J3AHH9_VICPA4.830e-2766.67U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A4S4L6_OSTLU4.870e-2767.11Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
K8YVZ6_NANGC6.640e-2772.00Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
W7TFU8_9STRA6.650e-2772.00U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]
A0A7S0KUK6_MICPS1.690e-2668.92Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
C1N183_MICPC1.690e-2667.57Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105906contigF-distichus_contig105906:1392..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons1
Model size228
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.9526675-CDS-F-distichus_contig105906:1391..16131622928984.9526675-CDS-F-distichus_contig105906:1391..1613Fucus distichus monoicousCDSF-distichus_contig105906 1392..1613 -
1690885092.276218-CDS-F-distichus_contig105906:1391..16131690885092.276218-CDS-F-distichus_contig105906:1391..1613Fucus distichus monoicousCDSF-distichus_contig105906 1392..1613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.9711337-UTR-F-distichus_contig105906:1613..16191622928984.9711337-UTR-F-distichus_contig105906:1613..1619Fucus distichus monoicousUTRF-distichus_contig105906 1614..1619 -
1690885092.2873752-UTR-F-distichus_contig105906:1613..16191690885092.2873752-UTR-F-distichus_contig105906:1613..1619Fucus distichus monoicousUTRF-distichus_contig105906 1614..1619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105906.502.1prot_F-distichus_contig105906.502.1Fucus distichus monoicouspolypeptideF-distichus_contig105906 1392..1613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105906.502.1

>prot_F-distichus_contig105906.502.1 ID=prot_F-distichus_contig105906.502.1|Name=mRNA_F-distichus_contig105906.502.1|organism=Fucus distichus monoicous|type=polypeptide|length=74bp
MEKLNRIQSKMHEAALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRRE
DGTIDVDTFKLACVAPMKALVQEV
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mRNA from alignment at F-distichus_contig105906:1392..1619-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105906.502.1 ID=mRNA_F-distichus_contig105906.502.1|Name=mRNA_F-distichus_contig105906.502.1|organism=Fucus distichus monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at F-distichus_contig105906:1392..1619- (Fucus distichus monoicous)
CAGGGCATGGAGAAGCTTAACCGCATCCAGAGCAAGATGCATGAGGCGGC
GCTGCTCTCTCCGGAGAACCTGCTGCTTTGCGCCCCCACCGGAGCCGGAA
AGACCAACGTAGCCCTCCTAGCCATGCTCCACGAGATAGGACAGCACCGC
CGAGAGGACGGAACCATCGACGTTGACACCTTCAAGCTCGCCTGCGTGGC
CCCCATGAAGGCTCTCGTGCAAGAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig105906:1392..1619-

>mRNA_F-distichus_contig105906.502.1 ID=mRNA_F-distichus_contig105906.502.1|Name=mRNA_F-distichus_contig105906.502.1|organism=Fucus distichus monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at F-distichus_contig105906:1392..1619- (Fucus distichus monoicous)
ATGGAGAAGCTTAACCGCATCCAGAGCAAGATGCATGAGGCGGCGCTGCT
CTCTCCGGAGAACCTGCTGCTTTGCGCCCCCACCGGAGCCGGAAAGACCA
ACGTAGCCCTCCTAGCCATGCTCCACGAGATAGGACAGCACCGCCGAGAG
GACGGAACCATCGACGTTGACACCTTCAAGCTCGCCTGCGTGGCCCCCAT
GAAGGCTCTCGTGCAAGAGGTAATGGAGAAGCTTAACCGCATCCAGAGCA
AGATGCATGAGGCGGCGCTGCTCTCTCCGGAGAACCTGCTGCTTTGCGCC
CCCACCGGAGCCGGAAAGACCAACGTAGCCCTCCTAGCCATGCTCCACGA
GATAGGACAGCACCGCCGAGAGGACGGAACCATCGACGTTGACACCTTCA
AGCTCGCCTGCGTGGCCCCCATGAAGGCTCTCGTGCAAGAGGTA
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