prot_F-distichus_contig105728.484.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig105728.484.1
Unique Nameprot_F-distichus_contig105728.484.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length159
Homology
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.040e-8
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 0
Query:   40 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKS 157
            MM+ DKL  ++  + D  + +    VI++  L  D++   R+LE+ P G++    +  +  ++ R+  ++    AL A+RG I+  +       L  +F GKCF CGK+GHR  EC++
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119          
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-6
Identity = 33/118 (27.97%), Postives = 61/118 (51.69%), Query Frame = 0
Query:   40 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKS 157
            MM+ DKL  ++  +GD  + +    VI++  L  +++   R+LEN   G++    +     ++ R+  ++     L  +RG I+  +       +  +F GKCF CGK+GHR  EC++
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119          
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.880e-6
Identity = 40/158 (25.32%), Postives = 74/158 (46.84%), Query Frame = 0
Query:    2 AWRNLELHYRAKGTREILRLSLEINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKSTK 159
            AW  LE  +  +     + L+ ++N  T+  G + +  +    +L+  L   G+  + E R+ VI++  L  +Y +  +++E+         I  V   Q   +L+++        +     + R+  KN +  +K  GKCFNCGK GH+  EC+S K
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIES---------IAGVTMLQAAEMLKREYAESRHEDTEVAFHSARQRNKNTKPQSKCRGKCFNCGKIGHKEAECRSPK 213          
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: F0X119_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X119_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.800e-5
Identity = 27/95 (28.42%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   65 VIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKSTK 159
            ++++   S DY+   +++ENN  G++    + ++  +Y R +R+++   AL  +R   ++     K +++ + F+GK FNCGK GHR V+C+  +
Sbjct:   17 MMLLGSFSNDYDNIVKIIENN-QGMDSFRTKEMLNREYERSIRKEKSQSALKTTRKMDSSGAR--KQKQIDHGFQGKFFNCGKDGHRKVDCRKNR 108          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F0W6E8_9STRA2.040e-830.51Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA1.170e-627.97Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A329S4C9_9STRA7.880e-625.32CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
F0X119_9STRA4.800e-528.42Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 141..157
e-value: 5.7E-4
score: 29.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 140..157
e-value: 4.3E-6
score: 26.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 141..157
score: 10.197
NoneNo IPR availableGENE3D4.10.60.10coord: 101..159
e-value: 5.7E-5
score: 25.0
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..91
e-value: 2.0E-7
score: 30.7
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 128..157

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 141..157
e-value: 5.7E-4
score: 29.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 140..157
e-value: 4.3E-6
score: 26.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 141..157
score: 10.197
NoneNo IPR availableGENE3D4.10.60.10coord: 101..159
e-value: 5.7E-5
score: 25.0
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..91
e-value: 2.0E-7
score: 30.7
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 128..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105728contigF-distichus_contig105728:1319..1795 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105728.484.1mRNA_F-distichus_contig105728.484.1Fucus distichus monoicousmRNAF-distichus_contig105728 1319..1795 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig105728.484.1 ID=prot_F-distichus_contig105728.484.1|Name=mRNA_F-distichus_contig105728.484.1|organism=Fucus distichus monoicous|type=polypeptide|length=159bp
EAWRNLELHYRAKGTREILRLSLEINGKTMEPGSDPFKFMMEVDKLAGDL
HRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGN
QYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGH
RAVECKSTK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf