mRNA_F-distichus_contig105728.484.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105728.484.1
Unique NamemRNA_F-distichus_contig105728.484.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.040e-8
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  118 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKS 471
            MM+ DKL  ++  + D  + +    VI++  L  D++   R+LE+ P G++    +  +  ++ R+  ++    AL A+RG I+  +       L  +F GKCF CGK+GHR  EC++
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
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BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-6
Identity = 33/118 (27.97%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:  118 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKS 471
            MM+ DKL  ++  +GD  + +    VI++  L  +++   R+LEN   G++    +     ++ R+  ++     L  +RG I+  +       +  +F GKCF CGK+GHR  EC++
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119
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BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.880e-6
Identity = 40/158 (25.32%), Postives = 74/158 (46.84%), Query Frame = 1 
Query:    4 AWRNLELHYRAKGTREILRLSLEINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKSTK 477
            AW  LE  +  +     + L+ ++N  T+  G + +  +    +L+  L   G+  + E R+ VI++  L  +Y +  +++E+         I  V   Q   +L+++        +     + R+  KN +  +K  GKCFNCGK GH+  EC+S K
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIES---------IAGVTMLQAAEMLKREYAESRHEDTEVAFHSARQRNKNTKPQSKCRGKCFNCGKIGHKEAECRSPK 213
[Close]
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Match: F0X119_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X119_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.800e-5
Identity = 27/95 (28.42%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  193 VIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGHRAVECKSTK 477
            ++++   S DY+   +++ENN  G++    + ++  +Y R +R+++   AL  +R   ++     K +++ + F+GK FNCGK GHR V+C+  +
Sbjct:   17 MMLLGSFSNDYDNIVKIIENN-QGMDSFRTKEMLNREYERSIRKEKSQSALKTTRKMDSSGAR--KQKQIDHGFQGKFFNCGKDGHRKVDCRKNR 108
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105728.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F0W6E8_9STRA2.040e-830.51Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA1.170e-627.97Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A329S4C9_9STRA7.880e-625.32CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
F0X119_9STRA4.800e-528.42Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105728contigF-distichus_contig105728:1319..1795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.4903142-CDS-F-distichus_contig105728:1318..17951622928981.4903142-CDS-F-distichus_contig105728:1318..1795Fucus distichus monoicousCDSF-distichus_contig105728 1319..1795 -
1690885090.8150203-CDS-F-distichus_contig105728:1318..17951690885090.8150203-CDS-F-distichus_contig105728:1318..1795Fucus distichus monoicousCDSF-distichus_contig105728 1319..1795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105728.484.1prot_F-distichus_contig105728.484.1Fucus distichus monoicouspolypeptideF-distichus_contig105728 1319..1795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105728.484.1

>prot_F-distichus_contig105728.484.1 ID=prot_F-distichus_contig105728.484.1|Name=mRNA_F-distichus_contig105728.484.1|organism=Fucus distichus monoicous|type=polypeptide|length=159bp
EAWRNLELHYRAKGTREILRLSLEINGKTMEPGSDPFKFMMEVDKLAGDL
HRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGN
QYNRLLRQQQDSKALSASRGTITANRENGKNRRLCNKFEGKCFNCGKKGH
RAVECKSTK
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mRNA from alignment at F-distichus_contig105728:1319..1795-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105728.484.1 ID=mRNA_F-distichus_contig105728.484.1|Name=mRNA_F-distichus_contig105728.484.1|organism=Fucus distichus monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at F-distichus_contig105728:1319..1795- (Fucus distichus monoicous)
GAGGCATGGCGTAACCTTGAACTTCACTATAGAGCAAAGGGTACCAGAGA
AATTCTTCGCTTGTCGCTCGAAATAAACGGAAAAACAATGGAGCCAGGTA
GTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAGACTTG
CACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGAGATGCGTGATTAT
TGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGCATGCTAGAGA
ACAACCCAGATGGTCTTAACAGGGGTGAGATTGAACGTGTTGTAGGAAAC
CAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTGTCAGC
GTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGGAAGAATAGGAGAC
TCTGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGGGAAGAAAGGGCAC
CGCGCTGTGGAATGTAAGAGCACGAAG
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Coding sequence (CDS) from alignment at F-distichus_contig105728:1319..1795-

>mRNA_F-distichus_contig105728.484.1 ID=mRNA_F-distichus_contig105728.484.1|Name=mRNA_F-distichus_contig105728.484.1|organism=Fucus distichus monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at F-distichus_contig105728:1319..1795- (Fucus distichus monoicous)
GAGGCATGGCGTAACCTTGAACTTCACTATAGAGCAAAGGGTACCAGAGA
AATTCTTCGCTTGTCGCTCGAAATAAACGGAAAAACAATGGAGCCAGGTA
GTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAGACTTG
CACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGAGATGCGTGATTAT
TGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGCATGCTAGAGA
ACAACCCAGATGGTCTTAACAGGGGTGAGATTGAACGTGTTGTAGGAAAC
CAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTGTCAGC
GTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGGAAGAATAGGAGAC
TCTGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGGGAAGAAAGGGCAC
CGCGCTGTGGAATGTAAGAGCACGAAGGAGGCATGGCGTAACCTTGAACT
TCACTATAGAGCAAAGGGTACCAGAGAAATTCTTCGCTTGTCGCTCGAAA
TAAACGGAAAAACAATGGAGCCAGGTAGTGATCCATTCAAATTCATGATG
GAAGTCGACAAGCTGGCAGGAGACTTGCACCGTCTAGGCGACAAATCAGT
GACTGAACTAAGGAGATGCGTGATTATTGTGTCCGGTTTGTCTGCTGATT
ATGAGATGGAATGCCGCATGCTAGAGAACAACCCAGATGGTCTTAACAGG
GGTGAGATTGAACGTGTTGTAGGAAACCAGTACAACAGACTTCTCAGACA
GCAACAGGACTCGAAGGCATTGTCAGCGTCGAGGGGCACCATCACGGCAA
ACCGAGAAAACGGGAAGAATAGGAGACTCTGCAACAAGTTCGAAGGAAAA
TGCTTCAACTGTGGGAAGAAAGGGCACCGCGCTGTGGAATGTAAGAGCAC
GAAG
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