mRNA_F-distichus_contig99784.19414.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99784.19414.1
Unique NamemRNA_F-distichus_contig99784.19414.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99784.19414.1 vs. uniprot
Match: D7FZR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR7_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.780e-51
Identity = 93/140 (66.43%), Postives = 114/140 (81.43%), Query Frame = 1 
Query:  154 MDFTLARFALNTAMASGRTTPEVMLNSGATALLGGMLSNSNAAVVGPAVMALSQMARHPACQRSLGLAGVIPPMVLLCFSSQSPVVLIQTCIALAQLSRYIPNKAIVAGKGGVAAILPLLKGYTREERITVEVLERGLLA 573
            MDFT ARFALN A+AS RT PEVML +GA A L GML+N N  V GPAV+ALSQMA H ACQR+LGLAG IPP+VLLCF+SQSP VL+Q CI++AQLSRY PN+AI+A KGGVAA++ LL+G+ RE+ +T +V+ + L A
Sbjct:    1 MDFTFARFALNMAIASSRTEPEVMLKAGAPAFLVGMLTNPNELVTGPAVLALSQMAHHEACQRALGLAGGIPPLVLLCFTSQSPAVLVQACISIAQLSRYPPNRAIIAAKGGVAAMVRLLEGFRREDHVTEQVIGQALTA 140
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99784.19414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZR7_ECTSI6.780e-5166.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99784contigF-distichus_contig99784:259..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue9.2e-43
Seed eggNOG ortholog2880.D7FZR7
Hectar predicted targeting categoryother localisation
EggNOG OGs28NP6@1,2QV8V@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size600
Cds size600
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99784.19414.1prot_F-distichus_contig99784.19414.1Fucus distichus monoicouspolypeptideF-distichus_contig99784 259..1913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.3460038-CDS-F-distichus_contig99784:258..3711622931179.3460038-CDS-F-distichus_contig99784:258..371Fucus distichus monoicousCDSF-distichus_contig99784 259..371 +
1690886192.923567-CDS-F-distichus_contig99784:258..3711690886192.923567-CDS-F-distichus_contig99784:258..371Fucus distichus monoicousCDSF-distichus_contig99784 259..371 +
1622931179.358805-CDS-F-distichus_contig99784:640..8091622931179.358805-CDS-F-distichus_contig99784:640..809Fucus distichus monoicousCDSF-distichus_contig99784 641..809 +
1690886192.935172-CDS-F-distichus_contig99784:640..8091690886192.935172-CDS-F-distichus_contig99784:640..809Fucus distichus monoicousCDSF-distichus_contig99784 641..809 +
1622931179.374811-CDS-F-distichus_contig99784:1242..13801622931179.374811-CDS-F-distichus_contig99784:1242..1380Fucus distichus monoicousCDSF-distichus_contig99784 1243..1380 +
1690886192.944789-CDS-F-distichus_contig99784:1242..13801690886192.944789-CDS-F-distichus_contig99784:1242..1380Fucus distichus monoicousCDSF-distichus_contig99784 1243..1380 +
1622931179.3909152-CDS-F-distichus_contig99784:1733..19131622931179.3909152-CDS-F-distichus_contig99784:1733..1913Fucus distichus monoicousCDSF-distichus_contig99784 1734..1913 +
1690886192.9541292-CDS-F-distichus_contig99784:1733..19131690886192.9541292-CDS-F-distichus_contig99784:1733..1913Fucus distichus monoicousCDSF-distichus_contig99784 1734..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99784.19414.1

>prot_F-distichus_contig99784.19414.1 ID=prot_F-distichus_contig99784.19414.1|Name=mRNA_F-distichus_contig99784.19414.1|organism=Fucus distichus monoicous|type=polypeptide|length=200bp
RRLCDETDKKGKRMARAAKRIADSEREEKTVLCQWLNGFLVCPSSDLSLS
SMDFTLARFALNTAMASGRTTPEVMLNSGATALLGGMLSNSNAAVVGPAV
MALSQMARHPACQRSLGLAGVIPPMVLLCFSSQSPVVLIQTCIALAQLSR
YIPNKAIVAGKGGVAAILPLLKGYTREERITVEVLERGLLARFLRYRWD*
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mRNA from alignment at F-distichus_contig99784:259..1913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99784.19414.1 ID=mRNA_F-distichus_contig99784.19414.1|Name=mRNA_F-distichus_contig99784.19414.1|organism=Fucus distichus monoicous|type=mRNA|length=1655bp|location=Sequence derived from alignment at F-distichus_contig99784:259..1913+ (Fucus distichus monoicous)
AGACGCCTGTGCGACGAGACGGACAAAAAAGGAAAGCGGATGGCAAGGGC
GGCAAAGCGAATTGCGGACTCCGAGAGAGAAGAGAAGACCGTATTGTGCC
AGTGGCTCAATGGGTAAAGTAGGGGTTAACTCTTCTGTACTTCAAGTAGA
TTGTTGCTTAATTTGTTTACTGTAGATACGGCGGGGTGCGATCGATGTCC
TCCACATTTTTCGAGCCTCGTCAGAGAAAGAGGAAAATGAGACCGAAAGT
CTCACGCCTCCGCTTTTGCATGCAGCGAAACCTCTACACACCCGGTCCTA
GATCCGCCAATCGCACCATACCTGCTTTCCTGCTCGTTTACTGCTTCCGC
TTCATGCCATGAATCCCACTACACAACATCAGCTTTCTCGTGTGCCCGTC
GAGTGACCTCTCCTTGTCTTCAATGGACTTCACCTTGGCACGGTTCGCCT
TAAACACGGCCATGGCCTCTGGACGAACGACACCGGAGGTGATGCTTAAC
TCAGGAGCGACGGCCTTGCTAGGAGGGATGCTGTCCAACTCTAACGCGGC
CGTGAGTGTATCAGCCGCCGTTAGAGGAGTAGGGAGGGGGGGGAGGGCGA
CAGTACAAAGTCGAATGTCTGAAGCAGGGAGATTCGTGCGTTCGATGTGA
CATGTGGGTGTTATTTTTCCTATATTCCCGATGAGACATTGAAAACCACG
AGACGCTTTCCCCTCGGTGCTGAACAGAGACAAAAGAAACAACAGCAGCT
TATTCCTGATCCTGATCCCCTTGCCGCCTCCCAAAGCTCGGCTGCTGAAG
TCGAAATCTGAGTTAAAAGTCTTGTACAAACCAGTCCCGAGTTTCCTTTT
GCGTCTATGGCACAGTAGTGGCCAGAACGCCTCTCGAAGGTGTCCGCTTT
GTCTTGATTTTCCTCAAACGAAACAGACGCGAAGAGCGTGGCAATCTCAG
CTCGCGTGAAACTGACTTCCCCGCGAGCGAGCAGGTGGTTGGCCCGGCGG
TCATGGCCCTCTCACAGATGGCGCGCCATCCGGCGTGCCAGCGGTCACTA
GGACTGGCTGGCGTCATCCCGCCGATGGTACTCCTGTGCTTCAGCAGCCA
GTCACCCGTGGTGCTGATACAGGTCAGTATCGTCTTCTTCGTCAGGTAGT
TAACTTTAGTTAGCTACAGGAAGGGGAGACAAGAGGCAAACGTTAACAAT
TCAATAAACACTTTCTTTGGAGATTGTGAGATACGGCAGTTGAGGGCTTC
GGGTTACCACGAGACTGTCGGCTCACCGACGTGCCGCCGACACCACAGGC
ATTCGAAAAAGATGACGATAGCCAGCGCGAAAACCTTCGGCGCGAGTGCT
TGTCAACGCCAATTGTGCTGCCGTTCACGAAAAGCAGATGATATTTTATC
GTGTCTGTTACTTTCCATCGTCCACCGTCTACCTCCCCTTCTTGCCGTCA
ATCCGCTCGGACCTCGCCTACCCAGACGTGCATCGCGTTGGCCCAACTAA
GTCGCTACATACCCAACAAGGCAATCGTCGCCGGAAAGGGCGGCGTAGCG
GCAATATTGCCCCTCCTCAAGGGCTACACGCGGGAGGAACGAATCACTGT
GGAGGTGCTTGAAAGAGGCTTGCTTGCACGATTTTTACGATATAGATGGG
ACTAG
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Coding sequence (CDS) from alignment at F-distichus_contig99784:259..1913+

>mRNA_F-distichus_contig99784.19414.1 ID=mRNA_F-distichus_contig99784.19414.1|Name=mRNA_F-distichus_contig99784.19414.1|organism=Fucus distichus monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at F-distichus_contig99784:259..1913+ (Fucus distichus monoicous)
AGACGCCTGTGCGACGAGACGGACAAAAAAGGAAAGCGGATGGCAAGGGC
GGCAAAGCGAATTGCGGACTCCGAGAGAGAAGAGAAGACCGTATTGTGCC
AGTGGCTCAATGGAGACGCCTGTGCGACGAGACGGACAAAAAAGGAAAGC
GGATGGCAAGGGCGGCAAAGCGAATTGCGGACTCCGAGAGAGAAGAGAAG
ACCGTATTGTGCCAGTGGCTCAATGGCTTTCTCGTGTGCCCGTCGAGTGA
CCTCTCCTTGTCTTCAATGGACTTCACCTTGGCACGGTTCGCCTTAAACA
CGGCCATGGCCTCTGGACGAACGACACCGGAGGTGATGCTTAACTCAGGA
GCGACGGCCTTGCTAGGAGGGATGCTGTCCAACTCTAACGCGGCCCTTTC
TCGTGTGCCCGTCGAGTGACCTCTCCTTGTCTTCAATGGACTTCACCTTG
GCACGGTTCGCCTTAAACACGGCCATGGCCTCTGGACGAACGACACCGGA
GGTGATGCTTAACTCAGGAGCGACGGCCTTGCTAGGAGGGATGCTGTCCA
ACTCTAACGCGGCCGTGGTTGGCCCGGCGGTCATGGCCCTCTCACAGATG
GCGCGCCATCCGGCGTGCCAGCGGTCACTAGGACTGGCTGGCGTCATCCC
GCCGATGGTACTCCTGTGCTTCAGCAGCCAGTCACCCGTGGTGCTGATAC
AGGTGGTTGGCCCGGCGGTCATGGCCCTCTCACAGATGGCGCGCCATCCG
GCGTGCCAGCGGTCACTAGGACTGGCTGGCGTCATCCCGCCGATGGTACT
CCTGTGCTTCAGCAGCCAGTCACCCGTGGTGCTGATACAGACGTGCATCG
CGTTGGCCCAACTAAGTCGCTACATACCCAACAAGGCAATCGTCGCCGGA
AAGGGCGGCGTAGCGGCAATATTGCCCCTCCTCAAGGGCTACACGCGGGA
GGAACGAATCACTGTGGAGGTGCTTGAAAGAGGCTTGCTTGCACGATTTT
TACGATATAGATGGGACTAGACGTGCATCGCGTTGGCCCAACTAAGTCGC
TACATACCCAACAAGGCAATCGTCGCCGGAAAGGGCGGCGTAGCGGCAAT
ATTGCCCCTCCTCAAGGGCTACACGCGGGAGGAACGAATCACTGTGGAGG
TGCTTGAAAGAGGCTTGCTTGCACGATTTTTACGATATAGATGGGACTAG
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