mRNA_F-distichus_contig99478.19391.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99478.19391.1
Unique NamemRNA_F-distichus_contig99478.19391.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.750e-20
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:  610 KAPPRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQ 762
            KAPPRG+NLLVVGLGNPG +YK TRHNAGFLVAEELARRHGGTLKI+TAFQ
Sbjct:  168 KAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQ 218
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A536NUD2_9CHLR (Peptidyl-tRNA hydrolase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536NUD2_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 5.330e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  616 PPRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTA 756
            PP  +  LV+GLGNPG++Y+ +RHN GFLVA+ELARRHGG +  R A
Sbjct:    9 PPAADRWLVIGLGNPGREYERSRHNLGFLVADELARRHGGRISDRAA 55
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.470e-10
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  619 PRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQ 762
            PR  NLL+VGLGNPGK+Y  TRHNAGFL  + LARR G   ++R+AFQ
Sbjct:  742 PRSKNLLIVGLGNPGKEYAMTRHNAGFLAVDLLARRLGADFRLRSAFQ 789
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A535HAL7_9CHLR (Peptidyl-tRNA hydrolase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HAL7_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 6.480e-9
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  616 PPRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTA 756
            PP G+  LV+GLGNPG+ Y+ +RHN GFLV +ELARRHG  +  R A
Sbjct:    8 PPAGDRWLVIGLGNPGRDYERSRHNLGFLVVDELARRHGARVTDRAA 54
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A2E8LHH6_9ACTN (Peptidyl-tRNA hydrolase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LHH6_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 1.050e-8
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:  634 LLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLK 744
            LLVVGLGNPG++Y+ TRHN GF   EELARRHGG+LK
Sbjct:   21 LLVVGLGNPGREYEGTRHNVGFAAVEELARRHGGSLK 57
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A2W4QA11_9PROT (Peptidyl-tRNA hydrolase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QA11_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 1.230e-8
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  637 LVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQVDI 771
            L+VGLGNPG++Y+ TRHNAGF + +ELARRHGG  ++   F+ ++
Sbjct:    8 LIVGLGNPGREYEATRHNAGFWLVDELARRHGGAFRLEPRFRAEL 52
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A7W0N1G4_9ACTN (Peptidyl-tRNA hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0N1G4_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 1.940e-8
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  631 NLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLK 744
            +LLV GLGNPG++Y+ TRHN GF+VA+ELARRHGG+ +
Sbjct:   14 DLLVAGLGNPGREYERTRHNVGFMVADELARRHGGSFR 51
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A7W0P6Y8_9ACTN (Peptidyl-tRNA hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0P6Y8_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 2.300e-8
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:  631 NLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQV 765
            +LLV GLGNPG+ Y+ TRHN G+LVA+ELARRHGG+ + + A +V
Sbjct:   15 DLLVAGLGNPGRSYESTRHNIGWLVADELARRHGGSFRSKFAGRV 59
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A023X0V5_9ACTN (Peptidyl-tRNA hydrolase n=2 Tax=Rubrobacter radiotolerans TaxID=42256 RepID=A0A023X0V5_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 2.530e-8
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  619 PRGNNLLVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQV 765
            PR    +VVGLGNPG++Y+ TRHN GFLVA+ELARR+GG+ + R   +V
Sbjct:   25 PRRKLPVVVGLGNPGRRYERTRHNVGFLVADELARRYGGSWRARKRSEV 73
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BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Match: A0A1A6C0D8_9GAMM (Peptidyl-tRNA hydrolase n=1 Tax=Acidihalobacter prosperus TaxID=160660 RepID=A0A1A6C0D8_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 2.810e-8
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  637 LVVGLGNPGKQYKFTRHNAGFLVAEELARRHGGTLKIRTAFQVDI 771
            L+VGLGNPG QY  TRHNAGF   +ELARRHG TL+  T F  ++
Sbjct:    7 LIVGLGNPGPQYDRTRHNAGFWFLDELARRHGATLRAETRFSGEV 51
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99478.19391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIA6_9PHAE2.750e-2090.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A536NUD2_9CHLR5.330e-1061.70Peptidyl-tRNA hydrolase n=1 Tax=Chloroflexi bacter... [more]
A0A4D9CWV7_9STRA6.470e-1064.58Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A535HAL7_9CHLR6.480e-959.57Peptidyl-tRNA hydrolase n=2 Tax=Chloroflexi bacter... [more]
A0A2E8LHH6_9ACTN1.050e-875.68Peptidyl-tRNA hydrolase n=2 Tax=Acidimicrobiaceae ... [more]
A0A2W4QA11_9PROT1.230e-855.56Peptidyl-tRNA hydrolase n=1 Tax=Proteobacteria bac... [more]
A0A7W0N1G4_9ACTN1.940e-868.42Peptidyl-tRNA hydrolase n=1 Tax=Actinomycetia bact... [more]
A0A7W0P6Y8_9ACTN2.300e-862.22Peptidyl-tRNA hydrolase n=1 Tax=Actinomycetia bact... [more]
A0A023X0V5_9ACTN2.530e-859.18Peptidyl-tRNA hydrolase n=2 Tax=Rubrobacter radiot... [more]
A0A1A6C0D8_9GAMM2.810e-862.22Peptidyl-tRNA hydrolase n=1 Tax=Acidihalobacter pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99478contigF-distichus_contig99478:1201..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog42256.RradSPS_0789
Preferred namepth
KEGG koko:K01056
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101
EggNOG free text desc.The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
EggNOG OGs2GKCV@201174,4CQJ6@84995,COG0193@1,COG0193@2
EC3.1.1.29
COG Functional cat.J
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons1
Model size917
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99478.19391.1prot_F-distichus_contig99478.19391.1Fucus distichus monoicouspolypeptideF-distichus_contig99478 1267..1980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.4336727-UTR-F-distichus_contig99478:1200..12661622931176.4336727-UTR-F-distichus_contig99478:1200..1266Fucus distichus monoicousUTRF-distichus_contig99478 1201..1266 +
1690886191.565336-UTR-F-distichus_contig99478:1200..12661690886191.565336-UTR-F-distichus_contig99478:1200..1266Fucus distichus monoicousUTRF-distichus_contig99478 1201..1266 +
1622931176.4634771-UTR-F-distichus_contig99478:1980..21171622931176.4634771-UTR-F-distichus_contig99478:1980..2117Fucus distichus monoicousUTRF-distichus_contig99478 1981..2117 +
1690886191.5895357-UTR-F-distichus_contig99478:1980..21171690886191.5895357-UTR-F-distichus_contig99478:1980..2117Fucus distichus monoicousUTRF-distichus_contig99478 1981..2117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.4473994-CDS-F-distichus_contig99478:1266..19801622931176.4473994-CDS-F-distichus_contig99478:1266..1980Fucus distichus monoicousCDSF-distichus_contig99478 1267..1980 +
1690886191.5789127-CDS-F-distichus_contig99478:1266..19801690886191.5789127-CDS-F-distichus_contig99478:1266..1980Fucus distichus monoicousCDSF-distichus_contig99478 1267..1980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99478.19391.1

>prot_F-distichus_contig99478.19391.1 ID=prot_F-distichus_contig99478.19391.1|Name=mRNA_F-distichus_contig99478.19391.1|organism=Fucus distichus monoicous|type=polypeptide|length=238bp
MRGQRHFPSVFLVVMSSSYLLRHLAISTQAFVTNTFRSLATTSAGRSARA
TTMPTPNCRPCSKRTRRGQGPREESLWLSSSALPLSFSFAGRHLSSSSTC
RHPITGEGGPTSSSSKFQTSSPRSQSEPTETRAPVSGGAGQGFGVDSGSC
AADPDTSNSAPQRRQTQSERRPKKQQQQPQPKAPPRGNNLLVVGLGNPGK
QYKFTRHNAGFLVAEELARRHGGTLKIRTAFQVDIMT*
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mRNA from alignment at F-distichus_contig99478:1201..2117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99478.19391.1 ID=mRNA_F-distichus_contig99478.19391.1|Name=mRNA_F-distichus_contig99478.19391.1|organism=Fucus distichus monoicous|type=mRNA|length=917bp|location=Sequence derived from alignment at F-distichus_contig99478:1201..2117+ (Fucus distichus monoicous)
TCCTTTGTCATGTCACACAGTTCGGTGGGAGAAGTAAAAGGTGCAACGTA
AGAAGGACAAAGCAGTATGCGAGGTCAACGACACTTCCCTAGTGTGTTTC
TGGTGGTAATGTCCTCCTCGTATCTTCTCCGACACCTGGCAATATCCACC
CAAGCTTTTGTAACGAATACCTTCCGCTCGTTGGCAACAACCTCAGCGGG
ACGAAGCGCTCGTGCTACTACAATGCCGACACCGAATTGCCGTCCCTGCT
CTAAGAGAACGCGGCGAGGGCAGGGACCTCGCGAAGAATCGTTATGGCTG
TCATCCTCCGCGTTACCGCTGTCCTTCTCCTTCGCGGGCAGGCATCTATC
TTCCTCATCCACTTGTCGACATCCTATAACCGGAGAAGGAGGCCCGACTT
CCTCAAGCTCGAAATTCCAGACATCGTCACCCCGCTCACAATCGGAACCG
ACGGAGACCAGAGCACCCGTTTCAGGCGGCGCTGGCCAGGGATTTGGTGT
CGATTCCGGTTCTTGCGCGGCCGACCCCGATACCAGCAACTCAGCGCCTC
AGCGACGGCAAACGCAGTCGGAACGGCGGCCAAAGAAGCAGCAGCAACAG
CCTCAGCCAAAGGCTCCCCCTCGTGGCAACAACTTGTTGGTCGTGGGTCT
GGGCAATCCAGGGAAACAGTACAAGTTCACTCGACACAACGCTGGATTCC
TGGTGGCGGAGGAGCTGGCGAGGAGGCATGGAGGAACGCTGAAGATCAGG
ACAGCGTTCCAGGTGGATATCATGACTTAGCAAACTAGAGCATGGTCGAT
ATTTGCTTGATACGATGGTGTGAGGGTGTGTCAACCAAGACATTGTTCGC
TCTCCGAGTCTTGTTCGCAGAGGGGATGCTCCGGCGTCATGACGCCTCAT
AGTTTGAGAGACTTGCC
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Coding sequence (CDS) from alignment at F-distichus_contig99478:1201..2117+

>mRNA_F-distichus_contig99478.19391.1 ID=mRNA_F-distichus_contig99478.19391.1|Name=mRNA_F-distichus_contig99478.19391.1|organism=Fucus distichus monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at F-distichus_contig99478:1201..2117+ (Fucus distichus monoicous)
ATGCGAGGTCAACGACACTTCCCTAGTGTGTTTCTGGTGGTAATGTCCTC
CTCGTATCTTCTCCGACACCTGGCAATATCCACCCAAGCTTTTGTAACGA
ATACCTTCCGCTCGTTGGCAACAACCTCAGCGGGACGAAGCGCTCGTGCT
ACTACAATGCCGACACCGAATTGCCGTCCCTGCTCTAAGAGAACGCGGCG
AGGGCAGGGACCTCGCGAAGAATCGTTATGGCTGTCATCCTCCGCGTTAC
CGCTGTCCTTCTCCTTCGCGGGCAGGCATCTATCTTCCTCATCCACTTGT
CGACATCCTATAACCGGAGAAGGAGGCCCGACTTCCTCAAGCTCGAAATT
CCAGACATCGTCACCCCGCTCACAATCGGAACCGACGGAGACCAGAGCAC
CCGTTTCAGGCGGCGCTGGCCAGGGATTTGGTGTCGATTCCGGTTCTTGC
GCGGCCGACCCCGATACCAGCAACTCAGCGCCTCAGCGACGGCAAACGCA
GTCGGAACGGCGGCCAAAGAAGCAGCAGCAACAGCCTCAGCCAAAGGCTC
CCCCTCGTGGCAACAACTTGTTGGTCGTGGGTCTGGGCAATCCAGGGAAA
CAGTACAAGTTCACTCGACACAACGCTGGATTCCTGGTGGCGGAGGAGCT
GGCGAGGAGGCATGGAGGAACGCTGAAGATCAGGACAGCGTTCCAGGTGG
ATATCATGACTTAGATGCGAGGTCAACGACACTTCCCTAGTGTGTTTCTG
GTGGTAATGTCCTCCTCGTATCTTCTCCGACACCTGGCAATATCCACCCA
AGCTTTTGTAACGAATACCTTCCGCTCGTTGGCAACAACCTCAGCGGGAC
GAAGCGCTCGTGCTACTACAATGCCGACACCGAATTGCCGTCCCTGCTCT
AAGAGAACGCGGCGAGGGCAGGGACCTCGCGAAGAATCGTTATGGCTGTC
ATCCTCCGCGTTACCGCTGTCCTTCTCCTTCGCGGGCAGGCATCTATCTT
CCTCATCCACTTGTCGACATCCTATAACCGGAGAAGGAGGCCCGACTTCC
TCAAGCTCGAAATTCCAGACATCGTCACCCCGCTCACAATCGGAACCGAC
GGAGACCAGAGCACCCGTTTCAGGCGGCGCTGGCCAGGGATTTGGTGTCG
ATTCCGGTTCTTGCGCGGCCGACCCCGATACCAGCAACTCAGCGCCTCAG
CGACGGCAAACGCAGTCGGAACGGCGGCCAAAGAAGCAGCAGCAACAGCC
TCAGCCAAAGGCTCCCCCTCGTGGCAACAACTTGTTGGTCGTGGGTCTGG
GCAATCCAGGGAAACAGTACAAGTTCACTCGACACAACGCTGGATTCCTG
GTGGCGGAGGAGCTGGCGAGGAGGCATGGAGGAACGCTGAAGATCAGGAC
AGCGTTCCAGGTGGATATCATGACTTAG
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