mRNA_F-distichus_contig9940.19384.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9940.19384.1
Unique NamemRNA_F-distichus_contig9940.19384.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9940.19384.1 vs. uniprot
Match: A0A6H5L4T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.440e-10
Identity = 71/184 (38.59%), Postives = 89/184 (48.37%), Query Frame = 2 
Query: 1130 LLREKREILRELKGVIQRQSEALGRLAKGCQEPFGREACRSNQGDA----VHPGTRRACYGSNKF------GIQYTRTGCFGTLSS--KRYPSEQINTTGSRSTAESSIVTSHLPPGPPDNTTSTFLKLGGRWGVHELAVDSRRKSKTT--SASYATYCDRRWEKEKARHRAGRRPRAVPALPL 1639
            LL  KR IL E+KGV+ RQ+EAL RL +           R   GD       P        S+ F        Q TR+G    +SS  K+ P+  + +  +R  AE  +     P  P DN TS FL  GGRWG        RR S TT  SASYATYC R  ++++     GRRP AVPALP+
Sbjct:  258 LLERKRGILLEMKGVVNRQAEALDRLVQSSANANVAGNGRRRGGDRNSRKSRPSQASVSTSSSLFTPNGATSGQNTRSGSCPHISSHIKKSPA-MLPSPLTRPKAELPMP----PTVPQDNGTSAFLARGGRWGGESRRRSWRRDSVTTASSASYATYCKR--DRDQGMLGIGRRPAAVPALPV 434
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BLAST of mRNA_F-distichus_contig9940.19384.1 vs. uniprot
Match: D7G1P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P3_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 5.510e-9
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 3 
Query:  192 IMALRKHHSEHLLEVLRCADKEEKERQKKIGRASSRANFTYLQKRFEAERLKTRRRIVNLLEDADAVEAATLREAQ 419
            I AL+  H+EH+LEV+R A+K+E  RQ+K+  A+S+ N  YLQKRF AER + +  I  L++DA+AVEAA L+E Q
Sbjct:    5 IAALKLKHAEHILEVVREAEKQEAARQRKLRHATSKDNLAYLQKRFTAERRQDQAHISGLVQDANAVEAALLKEQQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9940.19384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T8_9PHAE2.440e-1038.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1P3_ECTSI5.510e-952.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9940contigF-distichus_contig9940:2681..5003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000500.1
Exons2
Model size1718
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9940.19384.1prot_F-distichus_contig9940.19384.1Fucus distichus monoicouspolypeptideF-distichus_contig9940 4130..4951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.7834013-UTR-F-distichus_contig9940:2680..30051622931175.7834013-UTR-F-distichus_contig9940:2680..3005Fucus distichus monoicousUTRF-distichus_contig9940 2681..3005 +
1690886191.2721028-UTR-F-distichus_contig9940:2680..30051690886191.2721028-UTR-F-distichus_contig9940:2680..3005Fucus distichus monoicousUTRF-distichus_contig9940 2681..3005 +
1622931175.8025122-UTR-F-distichus_contig9940:3610..41291622931175.8025122-UTR-F-distichus_contig9940:3610..4129Fucus distichus monoicousUTRF-distichus_contig9940 3611..4129 +
1690886191.283178-UTR-F-distichus_contig9940:3610..41291690886191.283178-UTR-F-distichus_contig9940:3610..4129Fucus distichus monoicousUTRF-distichus_contig9940 3611..4129 +
1622931175.836899-UTR-F-distichus_contig9940:4951..50031622931175.836899-UTR-F-distichus_contig9940:4951..5003Fucus distichus monoicousUTRF-distichus_contig9940 4952..5003 +
1690886191.3039653-UTR-F-distichus_contig9940:4951..50031690886191.3039653-UTR-F-distichus_contig9940:4951..5003Fucus distichus monoicousUTRF-distichus_contig9940 4952..5003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.820357-CDS-F-distichus_contig9940:4129..49511622931175.820357-CDS-F-distichus_contig9940:4129..4951Fucus distichus monoicousCDSF-distichus_contig9940 4130..4951 +
1690886191.2932174-CDS-F-distichus_contig9940:4129..49511690886191.2932174-CDS-F-distichus_contig9940:4129..4951Fucus distichus monoicousCDSF-distichus_contig9940 4130..4951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9940.19384.1

>prot_F-distichus_contig9940.19384.1 ID=prot_F-distichus_contig9940.19384.1|Name=mRNA_F-distichus_contig9940.19384.1|organism=Fucus distichus monoicous|type=polypeptide|length=274bp
MRFMKYAYKHLDDCKASARRKSIGTKTSGIDRCDKLRRRRLHGNAAGPKP
LRKCATGSPTLARSPPRVGGARGCNTECSLREVDTVSPLDKDRPRLLREK
REILRELKGVIQRQSEALGRLAKGCQEPFGREACRSNQGDAVHPGTRRAC
YGSNKFGIQYTRTGCFGTLSSKRYPSEQINTTGSRSTAESSIVTSHLPPG
PPDNTTSTFLKLGGRWGVHELAVDSRRKSKTTSASYATYCDRRWEKEKAR
HRAGRRPRAVPALPLPLCISFTP*
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mRNA from alignment at F-distichus_contig9940:2681..5003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9940.19384.1 ID=mRNA_F-distichus_contig9940.19384.1|Name=mRNA_F-distichus_contig9940.19384.1|organism=Fucus distichus monoicous|type=mRNA|length=2323bp|location=Sequence derived from alignment at F-distichus_contig9940:2681..5003+ (Fucus distichus monoicous)
CTCCTCCGCACGTCGAGGCAGCGTCGTCCCTTGCTTATACTGACGCAGAC
AAGACGCCTGGGTGCAGCACCGAGCCTTCTTCCGATGAGTACGTTCACTC
AGAATCTTCTCTAACCTCTGCGATGGCACCCAATTCAGGCCGGCTCGAAA
TCTCAGACACAAGCATAAGGAAAATTCCCCATCGTCGACGTATCATGGCC
CTTAGGAAGCATCATTCCGAACACCTGCTAGAAGTACTTCGCTGCGCAGA
TAAAGAAGAGAAGGAGCGCCAGAAAAAGATCGGACGCGCCAGCAGCCGGG
CCAATTTCACGTATCTCCAGAAAAGGTGAATGCCAGGGTCATTACAAGAT
GTTGTCTCGCCCGGAGGGTAGCATTTTCTTACACTTCTGGACGAAAAGTT
AATACAGTAGTCCAAATATATTAACTTAGACTGTGCCCCCTTCGACATGA
CATATTATGCTTGTGTGTCCAAAAATGTCTCGCATAATTACTTCATAAAT
TATCTAAGGGTTCTCATCATTGTCTCCACTTTCATGGCGTGACTGCCGCT
GCTCAATCAAGTCGGTGTCAGAATCGATGGGTTTTGAGTTACACGGCCAG
GTTAGGCTTTGACACTGACATCTCAAAGTCGCAGAAGTGTTCCAACGCTA
AACTTTACCTTTAAAGCTGCTATTATGTCTCTATTAATGGGTTCGGATCC
ACGATCCAACATACTCGTCAGTGCCATTTCTAACGATGTATGACTCGTGG
GTCCAAAGAGGTACTGTAACCATTGTATTCTTATCGTCTAATGAATTTGA
CATCATGCAATTGTACGCAGAGTAGAACGCCATGGTTTGCTCGACTGTTG
TTGGAGCTGGCAGTTCGTGATCGATCCTCGGGTACATAAACCTATCGTGG
TCATCGTCTGATGCGGTTCGCCCTTAACAGGTTCGAAGCCGAGCGGCTTA
AGACGCGCAGACGAATAGTCAACCTCCTGGAAGATGCGGATGCAGTTGAA
GCTGCCACGCTACGCGAAGCACAGGCCAACCAACCGTTTCAAGTGAAAGC
CGATCAGAAGAGTGCGAATGTGCTCAGCGAACCAACCCATAAAGCCGTGG
AAGGAAAATGTGAGGGTAGACAGGGCGATGTTTCCCACGGCTGGCAGGAA
TCCAATGCATTTATGGGGTCACAGGCAACACAAGATCGGGATTTCATCGG
TACTGAGAAGGTGGGGGTTAACGTCTAGCCAAACTGAGACAAATGAAAAT
GGCAGAAATCTCGAAGGTTGGGTTCAAGAAACCCTACGGTACCACAAGAT
GCGATATGTTGTGAATTGCTCCAAGTAAGCGAACCTAAGCCGAACGTAAC
CACGGCACCTAACGAGCGAGAGGACGTGTATTTTCCCACACGACGGTTGC
ACACAAAACTGGGCGGCACCGGATCGCGTCGGCGGGGACCTACACGCAGA
TGCGCTTCATGAAGTATGCGTACAAGCACTTGGACGATTGTAAAGCATCA
GCAAGAAGAAAAAGCATCGGGACCAAAACGTCCGGCATAGATCGCTGCGA
CAAGCTTCGCAGGCGCCGTTTGCATGGTAATGCGGCCGGCCCAAAACCCT
TGCGGAAATGCGCCACCGGTAGTCCTACATTGGCGAGATCGCCGCCTAGA
GTAGGCGGAGCACGGGGCTGTAACACTGAATGTAGTTTAAGGGAAGTGGA
TACGGTATCACCACTGGATAAAGACCGACCACGGCTTTTGCGGGAGAAGC
GAGAAATTTTGCGGGAGCTGAAAGGGGTCATCCAGCGCCAATCGGAAGCC
CTGGGACGCCTGGCGAAAGGCTGTCAGGAGCCCTTCGGACGAGAGGCCTG
TAGATCAAACCAAGGTGACGCTGTTCACCCTGGTACACGCCGGGCTTGCT
ACGGCAGCAACAAATTTGGAATTCAGTACACGAGGACCGGTTGCTTCGGG
ACGTTGTCTTCTAAAAGATATCCGAGCGAGCAGATAAATACAACAGGCTC
ACGTTCCACTGCTGAATCGTCAATAGTTACGTCGCACTTGCCTCCTGGAC
CCCCAGATAACACCACTTCAACATTTTTGAAGCTTGGGGGGCGGTGGGGA
GTTCACGAGTTGGCAGTGGATTCGAGGCGGAAATCTAAGACTACTTCGGC
GTCTTATGCGACATACTGCGATCGACGCTGGGAAAAGGAGAAAGCTCGAC
ACCGTGCTGGTAGACGTCCACGGGCGGTGCCTGCGCTTCCCCTCCCATTA
TGTATTTCGTTTACCCCGTGATGACCGGAACATCGTCCTGAATTCGTGCT
CCAAACTCCCGGACAGTGGCGTG
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Coding sequence (CDS) from alignment at F-distichus_contig9940:2681..5003+

>mRNA_F-distichus_contig9940.19384.1 ID=mRNA_F-distichus_contig9940.19384.1|Name=mRNA_F-distichus_contig9940.19384.1|organism=Fucus distichus monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at F-distichus_contig9940:2681..5003+ (Fucus distichus monoicous)
ATGCGCTTCATGAAGTATGCGTACAAGCACTTGGACGATTGTAAAGCATC
AGCAAGAAGAAAAAGCATCGGGACCAAAACGTCCGGCATAGATCGCTGCG
ACAAGCTTCGCAGGCGCCGTTTGCATGGTAATGCGGCCGGCCCAAAACCC
TTGCGGAAATGCGCCACCGGTAGTCCTACATTGGCGAGATCGCCGCCTAG
AGTAGGCGGAGCACGGGGCTGTAACACTGAATGTAGTTTAAGGGAAGTGG
ATACGGTATCACCACTGGATAAAGACCGACCACGGCTTTTGCGGGAGAAG
CGAGAAATTTTGCGGGAGCTGAAAGGGGTCATCCAGCGCCAATCGGAAGC
CCTGGGACGCCTGGCGAAAGGCTGTCAGGAGCCCTTCGGACGAGAGGCCT
GTAGATCAAACCAAGGTGACGCTGTTCACCCTGGTACACGCCGGGCTTGC
TACGGCAGCAACAAATTTGGAATTCAGTACACGAGGACCGGTTGCTTCGG
GACGTTGTCTTCTAAAAGATATCCGAGCGAGCAGATAAATACAACAGGCT
CACGTTCCACTGCTGAATCGTCAATAGTTACGTCGCACTTGCCTCCTGGA
CCCCCAGATAACACCACTTCAACATTTTTGAAGCTTGGGGGGCGGTGGGG
AGTTCACGAGTTGGCAGTGGATTCGAGGCGGAAATCTAAGACTACTTCGG
CGTCTTATGCGACATACTGCGATCGACGCTGGGAAAAGGAGAAAGCTCGA
CACCGTGCTGGTAGACGTCCACGGGCGGTGCCTGCGCTTCCCCTCCCATT
ATGTATTTCGTTTACCCCGTGAATGCGCTTCATGAAGTATGCGTACAAGC
ACTTGGACGATTGTAAAGCATCAGCAAGAAGAAAAAGCATCGGGACCAAA
ACGTCCGGCATAGATCGCTGCGACAAGCTTCGCAGGCGCCGTTTGCATGG
TAATGCGGCCGGCCCAAAACCCTTGCGGAAATGCGCCACCGGTAGTCCTA
CATTGGCGAGATCGCCGCCTAGAGTAGGCGGAGCACGGGGCTGTAACACT
GAATGTAGTTTAAGGGAAGTGGATACGGTATCACCACTGGATAAAGACCG
ACCACGGCTTTTGCGGGAGAAGCGAGAAATTTTGCGGGAGCTGAAAGGGG
TCATCCAGCGCCAATCGGAAGCCCTGGGACGCCTGGCGAAAGGCTGTCAG
GAGCCCTTCGGACGAGAGGCCTGTAGATCAAACCAAGGTGACGCTGTTCA
CCCTGGTACACGCCGGGCTTGCTACGGCAGCAACAAATTTGGAATTCAGT
ACACGAGGACCGGTTGCTTCGGGACGTTGTCTTCTAAAAGATATCCGAGC
GAGCAGATAAATACAACAGGCTCACGTTCCACTGCTGAATCGTCAATAGT
TACGTCGCACTTGCCTCCTGGACCCCCAGATAACACCACTTCAACATTTT
TGAAGCTTGGGGGGCGGTGGGGAGTTCACGAGTTGGCAGTGGATTCGAGG
CGGAAATCTAAGACTACTTCGGCGTCTTATGCGACATACTGCGATCGACG
CTGGGAAAAGGAGAAAGCTCGACACCGTGCTGGTAGACGTCCACGGGCGG
TGCCTGCGCTTCCCCTCCCATTATGTATTTCGTTTACCCCGTGA
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