mRNA_F-distichus_contig99369.19378.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99369.19378.1
Unique NamemRNA_F-distichus_contig99369.19378.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 8.180e-23
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            VYEKAIKDLNEEGAREMC++FA VEQKLGEIDRARAV T+GSQFADPRRA  +WQ
Sbjct:  105 VYEKAIKDLNEEGAREMCLSFAAVEQKLGEIDRARAVWTYGSQFADPRRAEPYWQ 159
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: A0A836CMJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.630e-18
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFW 162
            VYEKAI+ L E+ ARE+C+ FA++EQ LGEIDRARAVL HGSQFADPRR  S+W
Sbjct:    2 VYEKAIEALGEDDAREICMQFARLEQALGEIDRARAVLAHGSQFADPRRHDSYW 55
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: K8YQA2_NANGC (Pre-mRNA-splicing factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 78.2 bits (191), Expect = 1.570e-15
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            VY+KAI+ L +EGA+ MC+ FA++E+KLGEIDRARAV THG+ FADPRR   +W+
Sbjct:  752 VYQKAIEVLPDEGAKNMCIQFAELERKLGEIDRARAVYTHGANFADPRRDPGYWK 806
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: A0A2J7QGD4_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QGD4_9NEOP)

HSP 1 Score: 76.6 bits (187), Expect = 1.750e-15
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ L EE AREMC+ FA++E KLGEIDRARA+ TH SQ  DPR  + FWQ
Sbjct:   53 IYEKAIEVLTEENAREMCLRFAEMETKLGEIDRARAIYTHCSQMCDPRVTAEFWQ 107
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: A0A7S2V324_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V324_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.520e-15
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ L +E + + C A+A++E+KLGEIDRARA+L HGSQFADPRR  ++W+
Sbjct:   13 IYEKAIEGLGDEDSCQACEAYAQLERKLGEIDRARALLVHGSQFADPRRHPAYWK 67
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: A0A6P8M466_9HYME (pre-mRNA-splicing factor syf1 homolog n=2 Tax=Hymenoptera TaxID=7399 RepID=A0A6P8M466_9HYME)

HSP 1 Score: 77.0 bits (188), Expect = 3.990e-15
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ LNE+  REMC+ FA++E KLGE+DRARA+  H SQ  DPR AS+FWQ
Sbjct:  647 IYEKAIEVLNEDNTREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQ 701
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: A0A2J7QCS1_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QCS1_9NEOP)

HSP 1 Score: 73.9 bits (180), Expect = 4.470e-15
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ L EE AREMC+ FAK+E KLGEIDRARA+  + SQ  DPR  + FWQ
Sbjct:   44 IYEKAIEVLTEENAREMCLRFAKMETKLGEIDRARAIYAYCSQMCDPRVTAEFWQ 98
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: UPI00138FF995 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FF995)

HSP 1 Score: 76.6 bits (187), Expect = 5.460e-15
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ L ++ AREMC+ FA++E+KLGEIDRARAV  H SQ +DPRR  SFW+
Sbjct:  650 IYEKAIEVLPDDDAREMCIRFAELERKLGEIDRARAVYMHASQISDPRRTPSFWK 704
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: C3Z7Y5_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z7Y5_BRAFL)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ L EE AREMC+ FA +E+KLGEIDRARAV  H SQ  DPR  +SFWQ
Sbjct:  304 IYEKAIEMLPEEHAREMCLRFADLEKKLGEIDRARAVYAHCSQMCDPRTTASFWQ 358
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BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Match: A0A0J7KPA6_LASNI (Pre-mrna-splicing factor syf1-like protein n=2 Tax=Formicidae TaxID=36668 RepID=A0A0J7KPA6_LASNI)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-14
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRASSFWQ 165
            +YEKAI+ LN+E  REMC+ FA++E KLGE+DRARAV  H SQ  DPR  S+FWQ
Sbjct:  494 IYEKAIEVLNDENTREMCLRFAEMETKLGEVDRARAVYAHCSQICDPRVTSNFWQ 548
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99369.19378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C7_ECTSI8.180e-2385.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMJ5_9STRA8.630e-1872.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YQA2_NANGC1.570e-1563.64Pre-mRNA-splicing factor SYF1 n=3 Tax=Monodopsidac... [more]
A0A2J7QGD4_9NEOP1.750e-1565.45Uncharacterized protein n=1 Tax=Cryptotermes secun... [more]
A0A7S2V324_9STRA2.520e-1560.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6P8M466_9HYME3.990e-1563.64pre-mRNA-splicing factor syf1 homolog n=2 Tax=Hyme... [more]
A0A2J7QCS1_9NEOP4.470e-1563.64Uncharacterized protein n=1 Tax=Cryptotermes secun... [more]
UPI00138FF9955.460e-1563.64LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1... [more]
C3Z7Y5_BRAFL1.010e-1467.27Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A0J7KPA6_LASNI1.020e-1463.64Pre-mrna-splicing factor syf1-like protein n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99369contigF-distichus_contig99369:788..1903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D7G3C7
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.1127768-CDS-F-distichus_contig99369:787..9041622931175.1127768-CDS-F-distichus_contig99369:787..904Fucus distichus monoicousCDSF-distichus_contig99369 788..904 -
1690886190.9340928-CDS-F-distichus_contig99369:787..9041690886190.9340928-CDS-F-distichus_contig99369:787..904Fucus distichus monoicousCDSF-distichus_contig99369 788..904 -
1622931175.1346729-CDS-F-distichus_contig99369:1855..19031622931175.1346729-CDS-F-distichus_contig99369:1855..1903Fucus distichus monoicousCDSF-distichus_contig99369 1856..1903 -
1690886190.9488907-CDS-F-distichus_contig99369:1855..19031690886190.9488907-CDS-F-distichus_contig99369:1855..1903Fucus distichus monoicousCDSF-distichus_contig99369 1856..1903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99369.19378.1prot_F-distichus_contig99369.19378.1Fucus distichus monoicouspolypeptideF-distichus_contig99369 788..1903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99369.19378.1

>prot_F-distichus_contig99369.19378.1 ID=prot_F-distichus_contig99369.19378.1|Name=mRNA_F-distichus_contig99369.19378.1|organism=Fucus distichus monoicous|type=polypeptide|length=55bp
VYEKAIKDLNEEGAREMCVAFAKVEQKLGEIDRARAVLTHGSQFADPRRA
SSFWQ
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mRNA from alignment at F-distichus_contig99369:788..1903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99369.19378.1 ID=mRNA_F-distichus_contig99369.19378.1|Name=mRNA_F-distichus_contig99369.19378.1|organism=Fucus distichus monoicous|type=mRNA|length=1116bp|location=Sequence derived from alignment at F-distichus_contig99369:788..1903- (Fucus distichus monoicous)
GTGTACGAGAAGGCCATCAAGGACCTCAACGAGGAAGGGGCCAGAGAGGT
AATCGTGACCGTGACCGATCTACCCGTTGTATTACTATTAATAGTACGAA
TAACCAACACGCACAGAAGTGTTGGTGATGGTTCGGATTACACCTTGTAT
CAATAGTACAAATACCCAACACGCACAGAAGTGTTGGTGATTGCTCGGCA
TCGATCTCCGCACTATTAGTACTCGAGGTCCGTTGTCAGGGAATTGTGAC
CCACCATAACAATAATAAAAAATCTGTAGCATATCCCCCGTAAACTCGAC
ACTTGATGAATGGGCCCCCCGAGGGGACGCTAATTCCCCATCCGCCCTAT
ACAATAACCCCGAAATGATTTCTGCTTCACTTTCAAGGCAAATAAAAACG
GTCGGAGACGATTACTTTCCGGCGAACAGTCACGAAATTTTTATTCTCAA
AAACATTTTTTTTTTCTCGGTGGGGGGGCGGGCAAGGTTAATGTGAAAAA
GCCTCGCGCGGCAGTGTTGTCTAGGACGTGTTTTTTAATACTTACCACGA
GACCTACTTTTCTTTCACGCTTTCATATCCCCCCCCCGCGAATGCCGTCC
TCTTTACTTGAACAGGAAGATATGTTCCATCTTCCATCGAAAGATTTGCC
ACCCGAGAGACGGAAATACTGTATACATTTTTCCTTCCAGAAATCTAGAC
AAAACTTGCACCTGTGTGAAAAAGTAATAGTAACAAAAAAAAGTTTACAT
ACTGTAGAGTAGTTTACAGTGCGCGCCTACGTACGTTCGTGTTATGTCAA
TTATCTGATACCTGGTAGTTGTTTTCTTTTCCCACTGTATCTTGCTGGGG
ATCGATGGACATATTATAACGGTCTAGGTCTGGCTTGTTTGTGTCACCGT
GTTGTTCTTGAGCTGAATGTCTTATGCAACGGTTTCCTCTTCCTTTTCTA
TCTATGCGTTGAAATGTATTGATATTTGCGTTTTGTATGTTCGTGGCAGA
TGTGCGTGGCGTTTGCCAAGGTGGAGCAGAAGCTGGGGGAGATCGATCGC
GCGAGGGCGGTGCTGACCCATGGCAGCCAGTTCGCCGACCCTCGGAGGGC
GTCGTCCTTCTGGCAG
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Coding sequence (CDS) from alignment at F-distichus_contig99369:788..1903-

>mRNA_F-distichus_contig99369.19378.1 ID=mRNA_F-distichus_contig99369.19378.1|Name=mRNA_F-distichus_contig99369.19378.1|organism=Fucus distichus monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at F-distichus_contig99369:788..1903- (Fucus distichus monoicous)
GTGTACGAGAAGGCCATCAAGGACCTCAACGAGGAAGGGGCCAGAGAGGT
GTACGAGAAGGCCATCAAGGACCTCAACGAGGAAGGGGCCAGAGAGATGT
GCGTGGCGTTTGCCAAGGTGGAGCAGAAGCTGGGGGAGATCGATCGCGCG
AGGGCGGTGCTGACCCATGGCAGCCAGTTCGCCGACCCTCGGAGGGCGTC
GTCCTTCTGGCAGATGTGCGTGGCGTTTGCCAAGGTGGAGCAGAAGCTGG
GGGAGATCGATCGCGCGAGGGCGGTGCTGACCCATGGCAGCCAGTTCGCC
GACCCTCGGAGGGCGTCGTCCTTCTGGCAG
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