mRNA_F-distichus_contig99300.19372.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99300.19372.1
Unique NamemRNA_F-distichus_contig99300.19372.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.040e-18
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    7 GGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQ-KLSIKCIRTDNGGECEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            GG M+  S+GGN Y +I  DDCTR+  V F+K KSD  A+    +ADY        +   RTD GGE +G+F     R  I  E TPP+TP+YNGVAER
Sbjct:  202 GGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAER 300
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BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.960e-18
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   16 MKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQ-KLSIKCIRTDNGGECEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            M+  S+GGN Y +I  DDCTR+  V F+K KSD  A+    +ADY        +   RTD GGE +G+F     R  I  E TPP+TP+YNGVAER
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAER 96
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BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9FP48_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FP48_FAGSY)

HSP 1 Score: 80.5 bits (197), Expect = 1.530e-15
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + RQK  S+KC+RTDNGGE    EF+       I +E T PDTPQ+NGVA+R
Sbjct:  281 DVCGPIEVESLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVERQKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPDTPQHNGVAKR 381
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BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9FLT3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FLT3_FAGSY)

HSP 1 Score: 79.3 bits (194), Expect = 3.850e-15
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + RQK  S+KC+RTDNGGE    EF+       I +E T P TPQ+NGVAER
Sbjct:  167 DVCGPIEVESLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVERQKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAER 267
[Close]
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A8J6D0F7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0F7_9ROSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.300e-15
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQKLSIKCIRTDNGGECEGE-FQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GPMK +SL G+ Y  +F+DDCTRF  V F+K+KSD         A    +    +KCIR+DNG E   + FQ   D   I ++ T   TPQ NGV ER
Sbjct:  485 DICGPMKTTSLNGSRYFALFIDDCTRFCWVSFLKQKSDVVGFFCKFKALAKNQASCKLKCIRSDNGTEYVSQRFQNICDEAGIQHQLTTIYTPQQNGVCER 585
[Close]
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9EW40_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EW40_FAGSY)

HSP 1 Score: 78.2 bits (191), Expect = 9.980e-15
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + R+K  S+KC+RTDNGGE    EF+       I +E T P TPQ+NGVAER
Sbjct:  377 DVCGPIEVESLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVEREKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAER 477
[Close]
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9IAD6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IAD6_FAGSY)

HSP 1 Score: 78.2 bits (191), Expect = 9.980e-15
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + R+K  S+KC+RTDNGGE    EF+       I +E T P TPQ+NGVAER
Sbjct:  429 DVCGPIEVESLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVEREKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAER 529
[Close]
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9IWX1_FAGSY (Uncharacterized protein n=7 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IWX1_FAGSY)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-14
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + R+K  S+KC+RTDNGGE    EF+       I +E T P TPQ+NGVAER
Sbjct:  464 DVCGPIEVESLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVEREKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAER 564
[Close]
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9FZK6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FZK6_FAGSY)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-14
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + R+K  S+KC+RTDNGGE    EF+       I +E T P TPQ+NGVAER
Sbjct:  742 DVCGPIEVESLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVEREKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAER 842
[Close]
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Match: A0A2N9EZ52_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EZ52_FAGSY)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-14
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 DAGGPMKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK-LSIKCIRTDNGGE-CEGEFQRELDRRSIANEHTPPDTPQYNGVAER 300
            D  GP++  SLGGN Y V F+DD +R K   +V K  D    L       + R+K  S+KC+RTDNGGE    EF+       I +E T P TPQ+NGVAER
Sbjct:  840 DVCGPIEVKSLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVEREKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAER 940
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99300.19372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE1.040e-1847.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE7.960e-1846.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FP48_FAGSY1.530e-1546.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FLT3_FAGSY3.850e-1546.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6D0F7_9ROSI7.300e-1543.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EW40_FAGSY9.980e-1545.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IAD6_FAGSY9.980e-1545.10Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IWX1_FAGSY1.010e-1445.10Uncharacterized protein n=7 Tax=Fagus sylvatica Ta... [more]
A0A2N9FZK6_FAGSY1.010e-1445.10Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9EZ52_FAGSY1.020e-1445.10Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99300contigF-distichus_contig99300:1744..2043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue2e-11
Seed eggNOG ortholog90675.XP_010418825.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size285
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.749098-UTR-F-distichus_contig99300:1743..17581622931174.749098-UTR-F-distichus_contig99300:1743..1758Fucus distichus monoicousUTRF-distichus_contig99300 1744..1758 +
1690886190.7284973-UTR-F-distichus_contig99300:1743..17581690886190.7284973-UTR-F-distichus_contig99300:1743..1758Fucus distichus monoicousUTRF-distichus_contig99300 1744..1758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.7634547-CDS-F-distichus_contig99300:1758..20431622931174.7634547-CDS-F-distichus_contig99300:1758..2043Fucus distichus monoicousCDSF-distichus_contig99300 1759..2043 +
1690886190.7720668-CDS-F-distichus_contig99300:1758..20431690886190.7720668-CDS-F-distichus_contig99300:1758..2043Fucus distichus monoicousCDSF-distichus_contig99300 1759..2043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99300.19372.1prot_F-distichus_contig99300.19372.1Fucus distichus monoicouspolypeptideF-distichus_contig99300 1759..2043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99300.19372.1

>prot_F-distichus_contig99300.19372.1 ID=prot_F-distichus_contig99300.19372.1|Name=mRNA_F-distichus_contig99300.19372.1|organism=Fucus distichus monoicous|type=polypeptide|length=95bp
MKHSSLGGNNYVVIFVDDCTRFKAVKFVKKKSDTTASLMSLVADYITRQK
LSIKCIRTDNGGECEGEFQRELDRRSIANEHTPPDTPQYNGVAER
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mRNA from alignment at F-distichus_contig99300:1744..2043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99300.19372.1 ID=mRNA_F-distichus_contig99300.19372.1|Name=mRNA_F-distichus_contig99300.19372.1|organism=Fucus distichus monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at F-distichus_contig99300:1744..2043+ (Fucus distichus monoicous)
GACGCGGGCGGGCCGATGAAGCACTCGAGTCTAGGCGGGAACAATTACGT
CGTCATTTTTGTGGACGACTGCACCCGCTTTAAGGCGGTGAAGTTCGTGA
AAAAGAAAAGTGACACAACGGCTTCTCTCATGTCTCTGGTTGCAGACTAT
ATCACACGGCAGAAGCTGTCGATCAAGTGCATACGGACGGATAATGGTGG
CGAGTGTGAGGGAGAATTTCAGCGCGAATTGGACCGGCGCAGCATCGCGA
ACGAGCATACCCCGCCAGACACGCCGCAGTACAATGGGGTGGCCGAACGT
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Coding sequence (CDS) from alignment at F-distichus_contig99300:1744..2043+

>mRNA_F-distichus_contig99300.19372.1 ID=mRNA_F-distichus_contig99300.19372.1|Name=mRNA_F-distichus_contig99300.19372.1|organism=Fucus distichus monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at F-distichus_contig99300:1744..2043+ (Fucus distichus monoicous)
ATGAAGCACTCGAGTCTAGGCGGGAACAATTACGTCGTCATTTTTGTGGA
CGACTGCACCCGCTTTAAGGCGGTGAAGTTCGTGAAAAAGAAAAGTGACA
CAACGGCTTCTCTCATGTCTCTGGTTGCAGACTATATCACACGGCAGAAG
CTGTCGATCAAGTGCATACGGACGGATAATGGTGGCGAGTGTGAGGGAGA
ATTTCAGCGCGAATTGGACCGGCGCAGCATCGCGAACGAGCATACCCCGC
CAGACACGCCGCAGTACAATGGGGTGGCCGAACGTATGAAGCACTCGAGT
CTAGGCGGGAACAATTACGTCGTCATTTTTGTGGACGACTGCACCCGCTT
TAAGGCGGTGAAGTTCGTGAAAAAGAAAAGTGACACAACGGCTTCTCTCA
TGTCTCTGGTTGCAGACTATATCACACGGCAGAAGCTGTCGATCAAGTGC
ATACGGACGGATAATGGTGGCGAGTGTGAGGGAGAATTTCAGCGCGAATT
GGACCGGCGCAGCATCGCGAACGAGCATACCCCGCCAGACACGCCGCAGT
ACAATGGGGTGGCCGAACGT
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