mRNA_F-distichus_contig99226.19364.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99226.19364.1
Unique NamemRNA_F-distichus_contig99226.19364.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99226.19364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99226contigF-distichus_contig99226:1535..1765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog2880.D8LP20
KEGG koko:K19525
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.9898565-CDS-F-distichus_contig99226:1534..17651622931173.9898565-CDS-F-distichus_contig99226:1534..1765Fucus distichus monoicousCDSF-distichus_contig99226 1535..1765 +
1690886190.3601763-CDS-F-distichus_contig99226:1534..17651690886190.3601763-CDS-F-distichus_contig99226:1534..1765Fucus distichus monoicousCDSF-distichus_contig99226 1535..1765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99226.19364.1prot_F-distichus_contig99226.19364.1Fucus distichus monoicouspolypeptideF-distichus_contig99226 1535..1765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99226.19364.1

>prot_F-distichus_contig99226.19364.1 ID=prot_F-distichus_contig99226.19364.1|Name=mRNA_F-distichus_contig99226.19364.1|organism=Fucus distichus monoicous|type=polypeptide|length=77bp
KIASGAQVPFHWPKAGAKGWLWGSRDVEGSKLRRLIVRRVGEGWAWSGEM
MPEKRGDVTLRVRNGRTREVAFLRVSV
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mRNA from alignment at F-distichus_contig99226:1535..1765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99226.19364.1 ID=mRNA_F-distichus_contig99226.19364.1|Name=mRNA_F-distichus_contig99226.19364.1|organism=Fucus distichus monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at F-distichus_contig99226:1535..1765+ (Fucus distichus monoicous)
AAGATCGCGAGCGGAGCCCAGGTTCCGTTCCACTGGCCTAAGGCGGGGGC
AAAGGGTTGGCTTTGGGGATCGCGCGACGTCGAGGGGTCAAAGCTTCGGC
GTCTAATCGTGCGCCGGGTCGGGGAAGGATGGGCATGGTCCGGGGAGATG
ATGCCCGAGAAGCGCGGCGACGTAACCCTACGCGTCAGGAACGGTCGCAC
GCGTGAGGTGGCGTTCCTCCGCGTCTCGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig99226:1535..1765+

>mRNA_F-distichus_contig99226.19364.1 ID=mRNA_F-distichus_contig99226.19364.1|Name=mRNA_F-distichus_contig99226.19364.1|organism=Fucus distichus monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at F-distichus_contig99226:1535..1765+ (Fucus distichus monoicous)
AAGATCGCGAGCGGAGCCCAGGTTCCGTTCCACTGGCCTAAGGCGGGGGC
AAAGGGTTGGCTTTGGGGATCGCGCGACGTCGAGGGGTCAAAGCTTCGGC
GTCTAATCGTGCGCCGGGTCGGGGAAGGATGGGCATGGTCCGGGGAGATG
ATGCCCGAGAAGCGCGGCGACGTAACCCTACGCGTCAGGAACGGTCGCAC
GCGTGAGGTGGCGTTCCTCCGCGTCTCGGTGAAGATCGCGAGCGGAGCCC
AGGTTCCGTTCCACTGGCCTAAGGCGGGGGCAAAGGGTTGGCTTTGGGGA
TCGCGCGACGTCGAGGGGTCAAAGCTTCGGCGTCTAATCGTGCGCCGGGT
CGGGGAAGGATGGGCATGGTCCGGGGAGATGATGCCCGAGAAGCGCGGCG
ACGTAACCCTACGCGTCAGGAACGGTCGCACGCGTGAGGTGGCGTTCCTC
CGCGTCTCGGTG
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