mRNA_F-distichus_contig99220.19363.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99220.19363.1
Unique NamemRNA_F-distichus_contig99220.19363.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Match: D7FXN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.330e-28
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 LEADSEPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGFLTKIIRMQ 186
            L+ADSEPLT WICKQLSMGRGRGQ VRGAVQALCVLLR+D AR+SF RHGGV +LTKIIRMQ
Sbjct:  159 LDADSEPLTAWICKQLSMGRGRGQSVRGAVQALCVLLRNDTARISFGRHGGVAYLTKIIRMQ 220
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BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.670e-27
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 LEADSEPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGFLTKIIRMQ 186
            L ADSEPLT WIC+QLSMGRGRGQ VRGAVQALCVLLR+D AR+SF RHGGV +LTKIIRMQ
Sbjct:  229 LNADSEPLTAWICQQLSMGRGRGQSVRGAVQALCVLLRNDTARISFGRHGGVAYLTKIIRMQ 290
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BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.770e-9
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   16 EPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGFLTKIIRMQ 186
            E    W+C+QL   R     +R AV AL +LLR ++AR  F +HGG+G+LTK+++ Q
Sbjct:  163 ETFINWLCEQLGNSRKNNPSMRAAVLALTILLRRNEARNLFGQHGGIGYLTKLLKNQ 219
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BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Match: W7T214_9STRA (V-type h+-transporting atpase 54 kd subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T214_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.580e-7
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 LEADSEPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGFLTKIIRMQV 189
            ++ D +     IC +LS    R   ++  V  L +LLR + +R+ F  HGGVGFLTK++++QV
Sbjct:    1 MDGDLDGFVSRICSELS--NSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQV 61
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BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Match: A0A4D9CM21_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM21_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 9.300e-6
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 LEADSEPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGFLTKIIRMQ 186
            ++ D +     IC +LS    R   ++  V  L +LLR + +R+ F  HGGVGFLTK++++Q
Sbjct:  215 MDGDLDAFVSRICSELS--NSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQ 274
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BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 50.4 bits (119), Expect = 1.290e-5
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 LEADSEPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHGGVGFLTKIIRMQ 186
            ++ D +     IC +LS    R   ++  V  L +LLR + +R+ F  HGGVGFLTK++++Q
Sbjct:  154 MDGDLDGFVSRICSELS--NSRNPSIKVIVSPLALLLRTEKSRLVFGAHGGVGFLTKLLKLQ 213
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99220.19363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FXN6_ECTSI1.330e-2885.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCE7_9PHAE4.670e-2783.87V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A7S2H8Z8_9STRA3.770e-943.86V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
W7T214_9STRA2.580e-738.10V-type h+-transporting atpase 54 kd subunit n=1 Ta... [more]
A0A4D9CM21_9STRA9.300e-637.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CP76_NANGC1.290e-537.10V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99220contigF-distichus_contig99220:1255..1443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue2.5e-23
Seed eggNOG ortholog2880.D7FXN6
Preferred nameATP6V1H
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.938586-CDS-F-distichus_contig99220:1254..14431622931173.938586-CDS-F-distichus_contig99220:1254..1443Fucus distichus monoicousCDSF-distichus_contig99220 1255..1443 -
1690886190.3436787-CDS-F-distichus_contig99220:1254..14431690886190.3436787-CDS-F-distichus_contig99220:1254..1443Fucus distichus monoicousCDSF-distichus_contig99220 1255..1443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99220.19363.1prot_F-distichus_contig99220.19363.1Fucus distichus monoicouspolypeptideF-distichus_contig99220 1255..1443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99220.19363.1

>prot_F-distichus_contig99220.19363.1 ID=prot_F-distichus_contig99220.19363.1|Name=mRNA_F-distichus_contig99220.19363.1|organism=Fucus distichus monoicous|type=polypeptide|length=63bp
LEADSEPLTQWICKQLSMGRGRGQGVRGAVQALCVLLRHDDARMSFARHG
GVGFLTKIIRMQV
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mRNA from alignment at F-distichus_contig99220:1255..1443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99220.19363.1 ID=mRNA_F-distichus_contig99220.19363.1|Name=mRNA_F-distichus_contig99220.19363.1|organism=Fucus distichus monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at F-distichus_contig99220:1255..1443- (Fucus distichus monoicous)
TTGGAAGCCGACAGCGAACCGCTTACCCAGTGGATCTGCAAACAGCTATC
CATGGGGAGGGGTCGCGGGCAGGGTGTTCGTGGCGCCGTCCAGGCCCTGT
GCGTCCTGCTGAGGCATGACGACGCGAGGATGTCCTTCGCGAGGCACGGG
GGCGTCGGGTTCCTGACCAAGATCATCCGGATGCAGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig99220:1255..1443-

>mRNA_F-distichus_contig99220.19363.1 ID=mRNA_F-distichus_contig99220.19363.1|Name=mRNA_F-distichus_contig99220.19363.1|organism=Fucus distichus monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at F-distichus_contig99220:1255..1443- (Fucus distichus monoicous)
TTGGAAGCCGACAGCGAACCGCTTACCCAGTGGATCTGCAAACAGCTATC
CATGGGGAGGGGTCGCGGGCAGGGTGTTCGTGGCGCCGTCCAGGCCCTGT
GCGTCCTGCTGAGGCATGACGACGCGAGGATGTCCTTCGCGAGGCACGGG
GGCGTCGGGTTCCTGACCAAGATCATCCGGATGCAGGTGTTGGAAGCCGA
CAGCGAACCGCTTACCCAGTGGATCTGCAAACAGCTATCCATGGGGAGGG
GTCGCGGGCAGGGTGTTCGTGGCGCCGTCCAGGCCCTGTGCGTCCTGCTG
AGGCATGACGACGCGAGGATGTCCTTCGCGAGGCACGGGGGCGTCGGGTT
CCTGACCAAGATCATCCGGATGCAGGTG
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