mRNA_F-distichus_contig99201.19359.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99201.19359.1
Unique NamemRNA_F-distichus_contig99201.19359.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A835Z8N4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.770e-13
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR+EWASLVATP  ARFQDALAFTRSIGDFHL
Sbjct:  267 YYKNVRREWASLVATPPRARFQDALAFTRSIGDFHL 302
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A7S2HF82_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HF82_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.260e-13
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR+EWASLV TP+ ARFQDALAFTRS+GD HL
Sbjct:    5 YYKNVRQEWASLVTTPVSARFQDALAFTRSLGDLHL 40
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A7S2HFJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFJ1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.090e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR+EWASLV TP+ ARFQDALAFTRS+GD HL
Sbjct:  194 YYKNVRQEWASLVTTPVSARFQDALAFTRSLGDLHL 229
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A7S2UZU0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZU0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.060e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR+EWASLV TP  ARF DALAFTRS+GDFHL
Sbjct:  338 YYKNVRQEWASLVTTPSTARFHDALAFTRSLGDFHL 373
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A7S2CTF3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTF3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.710e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR+EWASLVATP  ARF DALAFTRS+GD HL
Sbjct:  166 YYKNVRQEWASLVATPPSARFSDALAFTRSLGDLHL 201
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A7S2RFN5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFN5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.070e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR EWASL++TP  ARFQDALAFTRS+GD HL
Sbjct:  407 YYKNVRSEWASLISTPRPARFQDALAFTRSLGDLHL 442
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A5A8D505_CAFRO (PPM-type phosphatase domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D505_CAFRO)

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR EWA+LVATP  A+FQDALAFTRS+GD HL
Sbjct:  316 YYKNVRNEWATLVATPAFAQFQDALAFTRSLGDLHL 351
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A812VXF9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VXF9_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-11
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR EWA+LVATP  A FQDALAFTRSIGD HL
Sbjct:  348 YYKNVRNEWATLVATPPEAAFQDALAFTRSIGDLHL 383
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A7R9YAD0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAD0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.440e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            Y+KNVR+EWA LVATP  ARF DALAFTRS+GD HL
Sbjct:  154 YWKNVRQEWACLVATPSYARFHDALAFTRSLGDLHL 189
[Close]
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Match: A0A1V9Y789_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y789_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.760e-10
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL 108
            YYKNVR EWAS+VA P  A+F D LAFTRSIGDFHL
Sbjct:  275 YYKNVRNEWASMVAAPSDAQFADCLAFTRSIGDFHL 310
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99201.19359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8N4_9STRA1.770e-1391.67Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7S2HF82_9STRA4.260e-1383.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2HFJ1_9STRA2.090e-1283.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2UZU0_9STRA3.060e-1283.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CTF3_9STRA6.710e-1283.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RFN5_9STRA1.070e-1180.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5A8D505_CAFRO2.000e-1180.56PPM-type phosphatase domain-containing protein n=3... [more]
A0A812VXF9_9DINO5.100e-1183.33Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7R9YAD0_9STRA1.440e-1077.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9Y789_9STRA1.760e-1077.78PPM-type phosphatase domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99201contigF-distichus_contig99201:1883..1990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog112098.XP_008606724.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Serine/threonine phosphatases, family 2C, catalytic domain
EggNOG OGs2E2NX@1,2S9VW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.4062054-CDS-F-distichus_contig99201:1882..19901622931173.4062054-CDS-F-distichus_contig99201:1882..1990Fucus distichus monoicousCDSF-distichus_contig99201 1883..1990 +
1690886190.0605202-CDS-F-distichus_contig99201:1882..19901690886190.0605202-CDS-F-distichus_contig99201:1882..1990Fucus distichus monoicousCDSF-distichus_contig99201 1883..1990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99201.19359.1prot_F-distichus_contig99201.19359.1Fucus distichus monoicouspolypeptideF-distichus_contig99201 1883..1990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99201.19359.1

>prot_F-distichus_contig99201.19359.1 ID=prot_F-distichus_contig99201.19359.1|Name=mRNA_F-distichus_contig99201.19359.1|organism=Fucus distichus monoicous|type=polypeptide|length=36bp
YYKNVRKEWASLVATPMCARFQDALAFTRSIGDFHL
back to top

mRNA from alignment at F-distichus_contig99201:1883..1990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99201.19359.1 ID=mRNA_F-distichus_contig99201.19359.1|Name=mRNA_F-distichus_contig99201.19359.1|organism=Fucus distichus monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at F-distichus_contig99201:1883..1990+ (Fucus distichus monoicous)
TACTACAAGAATGTACGGAAGGAGTGGGCTTCACTGGTGGCGACGCCCAT
GTGTGCGAGGTTTCAGGACGCTCTGGCCTTTACGAGATCCATCGGCGATT
TTCATTTG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig99201:1883..1990+

>mRNA_F-distichus_contig99201.19359.1 ID=mRNA_F-distichus_contig99201.19359.1|Name=mRNA_F-distichus_contig99201.19359.1|organism=Fucus distichus monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at F-distichus_contig99201:1883..1990+ (Fucus distichus monoicous)
TACTACAAGAATGTACGGAAGGAGTGGGCTTCACTGGTGGCGACGCCCAT
GTGTGCGAGGTTTCAGGACGCTCTGGCCTTTACGAGATCCATCGGCGATT
TTCATTTGTACTACAAGAATGTACGGAAGGAGTGGGCTTCACTGGTGGCG
ACGCCCATGTGTGCGAGGTTTCAGGACGCTCTGGCCTTTACGAGATCCAT
CGGCGATTTTCATTTG
back to top