mRNA_F-distichus_contig99168.19356.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.570e-30 Identity = 75/212 (35.38%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
DV A A + EE++++LP D ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV++VDD+LVA + EE + +L FP K LG+ + GC I D +AGTL++ Q Y+ SM F+ + TS PAT G D P+ E E+ P REA+ +++W +T +R DV++ +
Sbjct: 849 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAV 1052
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.690e-30 Identity = 75/212 (35.38%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
DV A A + EE++++LP D ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV++VDD+LVA + EE + +L FP K LG+ + GC I D +AGTL++ Q Y+ SM F+ + TS PAT G D P+ E E+ P REA+ +++W +T +R DV++ +
Sbjct: 1228 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAV 1431
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.700e-30 Identity = 75/212 (35.38%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
DV A A + EE++++LP D ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV++VDD+LVA + EE + +L FP K LG+ + GC I D +AGTL++ Q Y+ SM F+ + TS PAT G D P+ E E+ P REA+ +++W +T +R DV++ +
Sbjct: 1248 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAV 1451
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.720e-30 Identity = 75/212 (35.38%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
DV A A + EE++++LP D ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV++VDD+LVA + EE + +L FP K LG+ + GC I D +AGTL++ Q Y+ SM F+ + TS PAT G D P+ E E+ P REA+ +++W +T +R DV++ +
Sbjct: 1391 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAV 1594
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 127 bits (318), Expect = 4.510e-30 Identity = 76/212 (35.85%), Postives = 116/212 (54.72%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
DV A A + EE++++LP D ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV++VDD+LVA + EE + +L FP K LG+ + GC I D DAGTL++ Q Y+ SM F+ + TS PAT G D P+ E + P REAV +++W +T +R DV++ +
Sbjct: 440 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAV 643
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.270e-29 Identity = 76/212 (35.85%), Postives = 116/212 (54.72%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
DV A A + EE++ LP D Q+ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV++VDD+LVA + EE + +L FP K LG+ + GC I D +AGTL++ Q Y+ SM F+ + TS PAT G D P+ E E+ P R+A+ +++W +T +R DV++ A +
Sbjct: 958 DVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAV 1161
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6A3GX66_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GX66_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.060e-28 Identity = 69/202 (34.16%), Postives = 107/202 (52.97%), Query Frame = 1
Query: 1 LDVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAE--KTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAAT 600
LD D A L + +K+ +Y+E+P ++ D +L KA+YG A W KT GF+ C AD CV+ + + + + + +VDD+++A++T + + + L++ F +K LG A LG I D AGTLK++Q RY+ + F E K P G K LSK +P T+AE MR PYR + L++ T
Sbjct: 158 LDADTAFLNSELKDRVYMEVPFGIENARDYQCQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCL-YVDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIEQTRYIDDVVERFGQENAKPVDNPCAAGVK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITT 357
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE) HSP 1 Score: 121 bits (304), Expect = 3.400e-28 Identity = 73/207 (35.27%), Postives = 109/207 (52.66%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTY 624
DV A A + EE++++LP D ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+IIV+HVDD+LVA + EE + + FP K LG+ + GC I D DAG LK+ Q Y+ SM F+ + TS PA+ G K D E P RE + +++W +T +R DV +
Sbjct: 419 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEE-LLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRFDVQWTSRIPASPGVDLGPKRD-------DEKAGEWPVRETIGSMMWVSTFSRPDVLF 617
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.680e-28 Identity = 71/205 (34.63%), Postives = 106/205 (51.71%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDV 618
D+ A +++ + E++++ LPE + +L K++YG A W + L GF QC AD+CVF G+VVV +VVHVDD+ E +R ++ +L + P+K LG Y GC D DAGTLK+ Q Y + F E P VG K LS+ D + E++ P+RE + +L+W AT TR D+
Sbjct: 39 DIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFG-RDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDI 235
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 120 bits (302), Expect = 6.620e-28 Identity = 72/212 (33.96%), Postives = 115/212 (54.25%), Query Frame = 1
Query: 4 DVDMACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAELAARGFEQCQADSCVFGRALRGKVVVIIVVHVDDLLVASETKRNEEQAINNLRSCFPIKGLGKAGLYLGCHITPDRDAGTLKLDQHRYVRSMASNFNAEKTSTTPATVGEKPLSKDDAPQTEAETEDMRVTPYREAVWALIWAATMTRHDVTYGAHQL 639
D+ A + EE+++ LP ++ + ++A+YG + W + L GFEQC+AD CVF + + VV+II+++VDD+LVA + EE + +L FP K LG+ + GC I D +AGTL++ Q Y+ SM + F+ + TS PAT G D P E E E+ P REA+ +++W +T +R DV++ +
Sbjct: 882 DMKQAYTHTTLDEEVFLRLPAGCGYKSHKIVKAERAIYGLKQSGRQWGYHVADTLVENGFEQCKADPCVFRKMVDEVVVMIIMIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGA-----DLGP--EREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAV 1085 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99168.19356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig99168.19356.1 >prot_F-distichus_contig99168.19356.1 ID=prot_F-distichus_contig99168.19356.1|Name=mRNA_F-distichus_contig99168.19356.1|organism=Fucus distichus monoicous|type=polypeptide|length=212bp MACLKAGVKEELYIELPEDYRDSYDQVGRLQKAMYGFVHARFLWLKTFSAback to top mRNA from alignment at F-distichus_contig99168:185..832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig99168.19356.1 ID=mRNA_F-distichus_contig99168.19356.1|Name=mRNA_F-distichus_contig99168.19356.1|organism=Fucus distichus monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at F-distichus_contig99168:185..832+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig99168:185..832+ >mRNA_F-distichus_contig99168.19356.1 ID=mRNA_F-distichus_contig99168.19356.1|Name=mRNA_F-distichus_contig99168.19356.1|organism=Fucus distichus monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at F-distichus_contig99168:185..832+ (Fucus distichus monoicous)back to top |