mRNA_F-distichus_contig99056.19349.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99056.19349.1
Unique NamemRNA_F-distichus_contig99056.19349.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99056.19349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99056contigF-distichus_contig99056:778..1952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.3406856-CDS-F-distichus_contig99056:777..11701622931172.3406856-CDS-F-distichus_contig99056:777..1170Fucus distichus monoicousCDSF-distichus_contig99056 778..1170 +
1690886189.6752868-CDS-F-distichus_contig99056:777..11701690886189.6752868-CDS-F-distichus_contig99056:777..1170Fucus distichus monoicousCDSF-distichus_contig99056 778..1170 +
1622931172.355305-CDS-F-distichus_contig99056:1875..19501622931172.355305-CDS-F-distichus_contig99056:1875..1950Fucus distichus monoicousCDSF-distichus_contig99056 1876..1950 +
1690886189.6897912-CDS-F-distichus_contig99056:1875..19501690886189.6897912-CDS-F-distichus_contig99056:1875..1950Fucus distichus monoicousCDSF-distichus_contig99056 1876..1950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99056.19349.1prot_F-distichus_contig99056.19349.1Fucus distichus monoicouspolypeptideF-distichus_contig99056 778..1950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99056.19349.1

>prot_F-distichus_contig99056.19349.1 ID=prot_F-distichus_contig99056.19349.1|Name=mRNA_F-distichus_contig99056.19349.1|organism=Fucus distichus monoicous|type=polypeptide|length=156bp
ANKRKLFEKAQLKRRYAKLLKKEGLANTSPLTHESQQARSDPTDDIAYTD
DEGKPGSSAPALAERRPKEAVETEDRNQGCSDKGDDEQNRRRVGERKRRR
EQHAEGTGRTKSGKRKTPLQQHRPDPFKEAKAKAEQRRLEKEEAHKERER
DKTEKQ
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mRNA from alignment at F-distichus_contig99056:778..1952+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99056.19349.1 ID=mRNA_F-distichus_contig99056.19349.1|Name=mRNA_F-distichus_contig99056.19349.1|organism=Fucus distichus monoicous|type=mRNA|length=1175bp|location=Sequence derived from alignment at F-distichus_contig99056:778..1952+ (Fucus distichus monoicous)
GCAAACAAACGGAAGCTCTTCGAGAAGGCGCAACTCAAGCGACGTTACGC
AAAGCTGCTCAAAAAGGAAGGCTTGGCAAACACCTCGCCATTGACACACG
AGTCACAACAGGCACGGTCCGATCCGACTGACGACATAGCCTACACGGAC
GATGAGGGAAAACCCGGATCATCAGCCCCAGCTCTCGCCGAGAGAAGACC
AAAAGAGGCTGTCGAGACGGAAGATCGAAACCAGGGATGCAGCGATAAAG
GCGACGATGAGCAGAACCGGCGGCGGGTTGGAGAGCGAAAGCGACGGCGA
GAGCAGCACGCAGAAGGCACCGGGAGGACCAAGTCGGGAAAGAGAAAGAC
GCCATTGCAGCAGCATCGACCAGATCCCTTCAAAGAAGCGAAGGCGAGCG
TAAAGAGCGATTTGTAGGGCTCCACTTAGTACGATATACGACCACCTGTA
ATATTCAAGAGTGTTTTTCTCGCAGATCCCGACAAGAAAAGGTACGGTAC
AGTACAGTACGGTACGGTACAGGCTGCCGCAACAAATCAAGGTTGGTGTA
AGCCTGCCTATCCATCTCAAAAGACGACGTGATGCCATTTTAAGTCATCC
CACACGCGCCAAGTACGTGGCAAAAGGCGAACGATGAGTATTATTATTAC
ACAGTAGTAGTATGTGTATCCGTGGTCATTCGTGAAACACTTCTTTGTTC
GTCGATTCCGCACCATGTTGTCAGTCCCTCAAAGTCATAGTCCCTCACGT
GACACGCCTGTCACATCTCTCAATGAAATGTATTGTCGTAAAACGCACGT
GGTCGCCTTCTCTGCGTGATTTAGTTTGGTATATGAGGAAGGGATGTACT
TTGATTTACTGAAAATGGTGTGATTTGCGATGAGATGCCCAGGTCGTGCG
CCAAGCGGCGTTTTCGATTTGTACCTGTACGCATCCATAGATAGTTTTAA
CAGTAATATTTGTCAAACGTTGACGGAAATTTCCTCCGACCGGCGGACAA
CAAAGCCTTTCGTGACGAGAGATCCGCTCTTTGCTGACATCGTGGACGCG
GGTTCCCTGCCGGCGGCGCTCGACCCGTGAATGAATCCCTTGGCACAGGC
AAAAGCGGAGCAGAGGAGGCTGGAGAAGGAGGAGGCGCATAAAGAGCGAG
AAAGAGATAAAACAGAGAAACAAAG
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Coding sequence (CDS) from alignment at F-distichus_contig99056:778..1952+

>mRNA_F-distichus_contig99056.19349.1 ID=mRNA_F-distichus_contig99056.19349.1|Name=mRNA_F-distichus_contig99056.19349.1|organism=Fucus distichus monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at F-distichus_contig99056:778..1952+ (Fucus distichus monoicous)
GCAAACAAACGGAAGCTCTTCGAGAAGGCGCAACTCAAGCGACGTTACGC
AAAGCTGCTCAAAAAGGAAGGCTTGGCAAACACCTCGCCATTGACACACG
AGTCACAACAGGCACGGTCCGATCCGACTGACGACATAGCCTACACGGAC
GATGAGGGAAAACCCGGATCATCAGCCCCAGCTCTCGCCGAGAGAAGACC
AAAAGAGGCTGTCGAGACGGAAGATCGAAACCAGGGATGCAGCGATAAAG
GCGACGATGAGCAGAACCGGCGGCGGGTTGGAGAGCGAAAGCGACGGCGA
GAGCAGCACGCAGAAGGCACCGGGAGGACCAAGTCGGGAAAGAGAAAGAC
GCCATTGCAGCAGCATCGACCAGATCCCTTCAAAGAAGCGAAGGCAAACA
AACGGAAGCTCTTCGAGAAGGCGCAACTCAAGCGACGTTACGCAAAGCTG
CTCAAAAAGGAAGGCTTGGCAAACACCTCGCCATTGACACACGAGTCACA
ACAGGCACGGTCCGATCCGACTGACGACATAGCCTACACGGACGATGAGG
GAAAACCCGGATCATCAGCCCCAGCTCTCGCCGAGAGAAGACCAAAAGAG
GCTGTCGAGACGGAAGATCGAAACCAGGGATGCAGCGATAAAGGCGACGA
TGAGCAGAACCGGCGGCGGGTTGGAGAGCGAAAGCGACGGCGAGAGCAGC
ACGCAGAAGGCACCGGGAGGACCAAGTCGGGAAAGAGAAAGACGCCATTG
CAGCAGCATCGACCAGATCCCTTCAAAGAAGCGAAGGCAAAAGCGGAGCA
GAGGAGGCTGGAGAAGGAGGAGGCGCATAAAGAGCGAGAAAGAGATAAAA
CAGAGAAACAAGCAAAAGCGGAGCAGAGGAGGCTGGAGAAGGAGGAGGCG
CATAAAGAGCGAGAAAGAGATAAAACAGAGAAACAA
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