mRNA_F-distichus_contig99016.19344.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig99016.19344.1
Unique NamemRNA_F-distichus_contig99016.19344.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig99016.19344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig99016contigF-distichus_contig99016:999..1405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig99016.19344.1prot_F-distichus_contig99016.19344.1Fucus distichus monoicouspolypeptideF-distichus_contig99016 1079..1387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.7812524-UTR-F-distichus_contig99016:998..10781622931171.7812524-UTR-F-distichus_contig99016:998..1078Fucus distichus monoicousUTRF-distichus_contig99016 999..1078 +
1690886189.442687-UTR-F-distichus_contig99016:998..10781690886189.442687-UTR-F-distichus_contig99016:998..1078Fucus distichus monoicousUTRF-distichus_contig99016 999..1078 +
1622931171.8189042-UTR-F-distichus_contig99016:1387..14051622931171.8189042-UTR-F-distichus_contig99016:1387..1405Fucus distichus monoicousUTRF-distichus_contig99016 1388..1405 +
1690886189.463897-UTR-F-distichus_contig99016:1387..14051690886189.463897-UTR-F-distichus_contig99016:1387..1405Fucus distichus monoicousUTRF-distichus_contig99016 1388..1405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.8000624-CDS-F-distichus_contig99016:1078..13871622931171.8000624-CDS-F-distichus_contig99016:1078..1387Fucus distichus monoicousCDSF-distichus_contig99016 1079..1387 +
1690886189.4534502-CDS-F-distichus_contig99016:1078..13871690886189.4534502-CDS-F-distichus_contig99016:1078..1387Fucus distichus monoicousCDSF-distichus_contig99016 1079..1387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig99016.19344.1

>prot_F-distichus_contig99016.19344.1 ID=prot_F-distichus_contig99016.19344.1|Name=mRNA_F-distichus_contig99016.19344.1|organism=Fucus distichus monoicous|type=polypeptide|length=103bp
MDQFVCASLFPHPLLACSGHVWYINYRRRLEIYHTPGTGEKRYGSGKSLP
TRLSLSYLFASPIIPYPGIMITGEFLLMKALQHRLQVRCPLLRCRNTPTY
HE*
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mRNA from alignment at F-distichus_contig99016:999..1405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig99016.19344.1 ID=mRNA_F-distichus_contig99016.19344.1|Name=mRNA_F-distichus_contig99016.19344.1|organism=Fucus distichus monoicous|type=mRNA|length=407bp|location=Sequence derived from alignment at F-distichus_contig99016:999..1405+ (Fucus distichus monoicous)
CAGCCGAGAGCCCACCAACACAGAGCCAGTAGTCCTCAAGGTAGTTCCAG
GTAACGGGTACTACCGTTTCAGGTTTCACCATGGATCAATTTGTATGCGC
CTCTCTTTTCCCACACCCACTATTGGCATGCAGTGGACACGTGTGGTACA
TAAACTATCGGAGGCGGTTGGAGATATACCACACTCCGGGGACAGGGGAA
AAGCGGTACGGGAGCGGAAAGAGCTTGCCGACCCGGTTGTCCCTCTCGTA
CCTATTTGCCTCTCCCATAATACCGTACCCTGGAATCATGATTACCGGAG
AGTTCTTACTAATGAAAGCATTACAGCACCGTCTCCAGGTCAGGTGCCCC
CTGCTTAGATGTCGCAACACCCCGACTTATCACGAGTAAAGAACTTAACA
TCCAAGG
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Coding sequence (CDS) from alignment at F-distichus_contig99016:999..1405+

>mRNA_F-distichus_contig99016.19344.1 ID=mRNA_F-distichus_contig99016.19344.1|Name=mRNA_F-distichus_contig99016.19344.1|organism=Fucus distichus monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at F-distichus_contig99016:999..1405+ (Fucus distichus monoicous)
ATGGATCAATTTGTATGCGCCTCTCTTTTCCCACACCCACTATTGGCATG
CAGTGGACACGTGTGGTACATAAACTATCGGAGGCGGTTGGAGATATACC
ACACTCCGGGGACAGGGGAAAAGCGGTACGGGAGCGGAAAGAGCTTGCCG
ACCCGGTTGTCCCTCTCGTACCTATTTGCCTCTCCCATAATACCGTACCC
TGGAATCATGATTACCGGAGAGTTCTTACTAATGAAAGCATTACAGCACC
GTCTCCAGGTCAGGTGCCCCCTGCTTAGATGTCGCAACACCCCGACTTAT
CACGAGTAAATGGATCAATTTGTATGCGCCTCTCTTTTCCCACACCCACT
ATTGGCATGCAGTGGACACGTGTGGTACATAAACTATCGGAGGCGGTTGG
AGATATACCACACTCCGGGGACAGGGGAAAAGCGGTACGGGAGCGGAAAG
AGCTTGCCGACCCGGTTGTCCCTCTCGTACCTATTTGCCTCTCCCATAAT
ACCGTACCCTGGAATCATGATTACCGGAGAGTTCTTACTAATGAAAGCAT
TACAGCACCGTCTCCAGGTCAGGTGCCCCCTGCTTAGATGTCGCAACACC
CCGACTTATCACGAGTAA
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