mRNA_F-distichus_contig98944.19331.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98944.19331.1
Unique NamemRNA_F-distichus_contig98944.19331.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98944.19331.1 vs. uniprot
Match: A0A6H5L146_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L146_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.070e-14
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 VVKFFGAVGAGLEEELASRQDERPVWLSTSGLGVYW 108
            VVKFFGAVG GLE+E+ASR DE PVWLSTSGLGVYW
Sbjct:  226 VVKFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 261
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BLAST of mRNA_F-distichus_contig98944.19331.1 vs. uniprot
Match: D8LJS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.800e-13
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 VVKFFGAVGAGLEEELASRQDERPVWLSTSGLGVYW 108
            VV+FFGAVG GLE+E+ASR DE PVWLSTSGLGVYW
Sbjct:  229 VVQFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 264
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BLAST of mRNA_F-distichus_contig98944.19331.1 vs. uniprot
Match: A0A661FR64_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661FR64_9GAMM)

HSP 1 Score: 46.6 bits (109), Expect = 7.190e-5
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 KFFGAVGAGLEEELASRQDERPVWLSTSGLGVYW 108
            + +  VGA LE++L+    ERPVWLSTSGLGVYW
Sbjct:  150 QLWALVGATLEQQLS----ERPVWLSTSGLGVYW 179
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98944.19331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L146_9PHAE9.070e-1486.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS5_ECTSI3.800e-1383.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A661FR64_9GAMM7.190e-561.76Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98944contigF-distichus_contig98944:1207..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog2880.D8LJS5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2B3PJ@1,2S91Y@2759
Ec32 ortholog descriptionSecreted protein similar to EsV-1-207
Ec32 orthologEc-12_003090.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.9715102-CDS-F-distichus_contig98944:1206..13171622931169.9715102-CDS-F-distichus_contig98944:1206..1317Fucus distichus monoicousCDSF-distichus_contig98944 1207..1317 -
1690886188.8274748-CDS-F-distichus_contig98944:1206..13171690886188.8274748-CDS-F-distichus_contig98944:1206..1317Fucus distichus monoicousCDSF-distichus_contig98944 1207..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98944.19331.1prot_F-distichus_contig98944.19331.1Fucus distichus monoicouspolypeptideF-distichus_contig98944 1207..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98944.19331.1

>prot_F-distichus_contig98944.19331.1 ID=prot_F-distichus_contig98944.19331.1|Name=mRNA_F-distichus_contig98944.19331.1|organism=Fucus distichus monoicous|type=polypeptide|length=37bp
VVKFFGAVGAGLEEELASRQDERPVWLSTSGLGVYW*
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mRNA from alignment at F-distichus_contig98944:1207..1317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98944.19331.1 ID=mRNA_F-distichus_contig98944.19331.1|Name=mRNA_F-distichus_contig98944.19331.1|organism=Fucus distichus monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at F-distichus_contig98944:1207..1317- (Fucus distichus monoicous)
GTGGTGAAATTTTTTGGCGCAGTTGGAGCGGGCCTCGAGGAAGAGCTTGC
CTCGCGGCAGGACGAGCGACCCGTGTGGCTGAGCACGTCAGGCCTAGGCG
TGTACTGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig98944:1207..1317-

>mRNA_F-distichus_contig98944.19331.1 ID=mRNA_F-distichus_contig98944.19331.1|Name=mRNA_F-distichus_contig98944.19331.1|organism=Fucus distichus monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at F-distichus_contig98944:1207..1317- (Fucus distichus monoicous)
GTGGTGAAATTTTTTGGCGCAGTTGGAGCGGGCCTCGAGGAAGAGCTTGC
CTCGCGGCAGGACGAGCGACCCGTGTGGCTGAGCACGTCAGGCCTAGGCG
TGTACTGGTGAGTGGTGAAATTTTTTGGCGCAGTTGGAGCGGGCCTCGAG
GAAGAGCTTGCCTCGCGGCAGGACGAGCGACCCGTGTGGCTGAGCACGTC
AGGCCTAGGCGTGTACTGGTGA
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