mRNA_F-distichus_contig98941.19330.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98941.19330.1
Unique NamemRNA_F-distichus_contig98941.19330.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98941.19330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98941contigF-distichus_contig98941:1..2090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size867
Cds size858
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98941.19330.1prot_F-distichus_contig98941.19330.1Fucus distichus monoicouspolypeptideF-distichus_contig98941 1..2081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.8713946-CDS-F-distichus_contig98941:0..721622931169.8713946-CDS-F-distichus_contig98941:0..72Fucus distichus monoicousCDSF-distichus_contig98941 1..72 -
1690886188.7785194-CDS-F-distichus_contig98941:0..721690886188.7785194-CDS-F-distichus_contig98941:0..72Fucus distichus monoicousCDSF-distichus_contig98941 1..72 -
1622931169.8888736-CDS-F-distichus_contig98941:673..10461622931169.8888736-CDS-F-distichus_contig98941:673..1046Fucus distichus monoicousCDSF-distichus_contig98941 674..1046 -
1690886188.7926762-CDS-F-distichus_contig98941:673..10461690886188.7926762-CDS-F-distichus_contig98941:673..1046Fucus distichus monoicousCDSF-distichus_contig98941 674..1046 -
1622931169.907857-CDS-F-distichus_contig98941:1668..20811622931169.907857-CDS-F-distichus_contig98941:1668..2081Fucus distichus monoicousCDSF-distichus_contig98941 1669..2081 -
1690886188.805182-CDS-F-distichus_contig98941:1668..20811690886188.805182-CDS-F-distichus_contig98941:1668..2081Fucus distichus monoicousCDSF-distichus_contig98941 1669..2081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.9229193-UTR-F-distichus_contig98941:2081..20901622931169.9229193-UTR-F-distichus_contig98941:2081..2090Fucus distichus monoicousUTRF-distichus_contig98941 2082..2090 -
1690886188.8165114-UTR-F-distichus_contig98941:2081..20901690886188.8165114-UTR-F-distichus_contig98941:2081..2090Fucus distichus monoicousUTRF-distichus_contig98941 2082..2090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98941.19330.1

>prot_F-distichus_contig98941.19330.1 ID=prot_F-distichus_contig98941.19330.1|Name=mRNA_F-distichus_contig98941.19330.1|organism=Fucus distichus monoicous|type=polypeptide|length=286bp
MAETKPALNCAQHALQGMVNVSKRKWENKDCGKLSSFGMAGTKTAEVCAQ
HALDGMVNVFSKKCRTGGCRKQSPFGVTGSKTAEYCVPHAPVGMENVCCR
KCRIEGCCKHPPLGMAGTNKREYCAQHAPDGMVNVCSRKWENKDCGKLSS
FGMARTKTAEVCAQHALDGMVNVFSKKCRTEGCRKQSPFGVAGSKTAEYC
VPHAPVGMKSVCSRTCRIEGCCKHPSLVMAGTNKREYCAQHAPNGMVNVC
SRQCKTHSCCKLLSSFGIARTKTAEVCAQHALDGMV
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mRNA from alignment at F-distichus_contig98941:1..2090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98941.19330.1 ID=mRNA_F-distichus_contig98941.19330.1|Name=mRNA_F-distichus_contig98941.19330.1|organism=Fucus distichus monoicous|type=mRNA|length=2090bp|location=Sequence derived from alignment at F-distichus_contig98941:1..2090- (Fucus distichus monoicous)
TCGTTCGGAATGGCCGAAACAAAACCGGCGCTGAACTGCGCTCAACACGC
CCTTCAAGGGATGGTGAACGTCTCCAAAAGGAAGTGGGAAAACAAAGACT
GCGGCAAGCTATCGTCGTTCGGAATGGCCGGAACCAAAACGGCGGAAGTC
TGCGCTCAGCACGCCCTAGACGGGATGGTCAACGTATTCAGCAAGAAGTG
CCGAACCGGAGGCTGCCGCAAGCAGTCGCCGTTTGGAGTGACCGGTTCAA
AAACGGCGGAGTACTGCGTACCACACGCCCCAGTCGGGATGGAAAACGTC
TGTTGCAGAAAGTGTAGGATAGAAGGCTGCTGTAAGCATCCGCCGCTCGG
AATGGCGGGTACGAACAAACGGGAATACTGCGCTCAGCATGCCCCTGACG
GGATGGTCAACGTCTGCAGCAGGTAATGCAAAACGCAAGGCTGCTGCAAG
TTAGTATAATGGTCAGTACACCACATTGTGGCTGTGGAAACCCGAGTTCG
ATTCTCGGATTGGACACCATGTTAAGAATAGCAAGCGCTGCGTATGTCAA
CAGAAGGCTGCGACGGTACAGACTTATTGTACTGCTGCTATCTAATGTAT
TTACTCTAGCTTGTCTTTCTTAGAGAGTTCAATGTATATAGATACGGAGC
ACCTCATGACGGTCGACTCCCCTTAGTGATGGCTGCACCCTGATCTAGAC
CTTGTTACAGAAGCTCGGTGATACTTGATCGAAGGAGCTACTGCAGCGGT
GCCACTTCATTCTTGATTTATTTATTTCCCTAAACAACCGTGCCTCAACG
ATTAACTCAAACTGCTGTTGCTGTAGTGAAGAGAAGAAAGGTAAAAGAAG
TAGAAGTGATCAGTGTGGGGGTGTTCTGCCCCCTTCACGGTAAGGATAAC
GCCATTTCGGATGCGTAACGGGGTGATGGCGCTTTTGTCCCCATTATCTT
GCCATGGTTCCGTTATTTACAACGACTCCTGACGTAGCGATTCGTAACAC
TGCGCTCAACACGCCCTTCAAGGGATGGTGAACGTCTTCAAAAGGAAGTG
GGAAAACAAAGACTGCGGCAAGCTATCGTCGTTTGGAATGGCCAGAACCA
AAACGGCGGAAGTCTGCGCTCAGCACGCCCTAGACGGGATGGTCAACGTA
TTCAGCAAGAAGTGCCGAACCGAAGGCTGCCGGAAGCAATCGCCGTTTGG
AGTGGCCGGTTCAAAAACGGCGGAGTACTGCGTACCACACGCCCCAGTCG
GGATGAAAAGCGTCTGCAGCAGAACGTGTAGGATAGAAGGCTGCTGTAAG
CATCCGTCGCTCGTAATGGCGGGTACGAACAAACGGGAATACTGCGCTCA
ACATGCCCCTAACGGGATGGTCAACGTCTGCAGCAGGCAATGTAAAACGC
ATAGCTGCTGCAAGTTAGTATAGTGGTCAGTACACCACAATATGGCTGTG
GGAACCCGAGTTCGATTCTCGGATAGTACGCCATGTTAAGAATAGCAAGC
GCTACGCATGTCAACAGAAGGCTGCGACGGTACTACTTAATTGTAATGTT
GCTACCTAATGCAATTGTTCTAACTTGTCTTTCGTTGAGTTCAATACATC
AAGATGCGGAGCACCTCATGACGGTCGACTCCCCTTAGTGATGGCTGCAC
CCTGATCTAGGCCTTGTCAGTGATACCTGATCGAAGGAGCTCATGCAGCG
GTGCCACTTCATTCTTGATTTATTTATTTCCCTCAACAACCGTGCCTCAA
CTATTAACTCAAACTGTTGTTGCTGTAGAGAAGAGAAGAGAGGTAAAAGA
AGTAGAAATGATCAGTGTGGGGGAGTTCTGCCCCCCTCACGGTAACGCTA
TTTCGGATGCCTAACGGGGTGATGGCGCTTTTGTCCCCATTATCTTGCCA
TGGTTCCATTACTTACAACGAATCCTGACGTAGCGATTCGTAACACTGCG
CTCAACACGCCCTTCAAGGGATGGGGAACGTCTCCAAAAGGAAGGGGGAA
AACAAAGACTGCGGCAAGCTATCGTCGTTCGGAATAGCCAGAACCAAAAC
GGCGGAGGTCTGCGCTCAGCACGCCCTAGACGGGATGGTC
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Coding sequence (CDS) from alignment at F-distichus_contig98941:1..2090-

>mRNA_F-distichus_contig98941.19330.1 ID=mRNA_F-distichus_contig98941.19330.1|Name=mRNA_F-distichus_contig98941.19330.1|organism=Fucus distichus monoicous|type=CDS|length=1716bp|location=Sequence derived from alignment at F-distichus_contig98941:1..2090- (Fucus distichus monoicous)
ATGGCCGAAACAAAACCGGCGCTGAACTGCGCTCAACACGCCCTTCAAGG
GATGGTGAACGTCTCCAAAAGGAAGTGGGAAAACAAAGACTGCGGCAAGC
TATCGTCGTTCGGAATGGCCGGAACCAAAACGGCGGAAGTCTGCGCTCAG
CACGCCCTAGACGGGATGGTCAACGTATTCAGCAAGAAGTGCCGAACCGG
AGGCTGCCGCAAGCAGTCGCCGTTTGGAGTGACCGGTTCAAAAACGGCGG
AGTACTGCGTACCACACGCCCCAGTCGGGATGGAAAACGTCTGTTGCAGA
AAGTGTAGGATAGAAGGCTGCTGTAAGCATCCGCCGCTCGGAATGGCGGG
TACGAACAAACGGGAATACTGCGCTCAGCATGCCCCTGACGGGATGGTCA
ACGTCTGCAGCAGATGGCCGAAACAAAACCGGCGCTGAACTGCGCTCAAC
ACGCCCTTCAAGGGATGGTGAACGTCTCCAAAAGGAAGTGGGAAAACAAA
GACTGCGGCAAGCTATCGTCGTTCGGAATGGCCGGAACCAAAACGGCGGA
AGTCTGCGCTCAGCACGCCCTAGACGGGATGGTCAACGTATTCAGCAAGA
AGTGCCGAACCGGAGGCTGCCGCAAGCAGTCGCCGTTTGGAGTGACCGGT
TCAAAAACGGCGGAGTACTGCGTACCACACGCCCCAGTCGGGATGGAAAA
CGTCTGTTGCAGAAAGTGTAGGATAGAAGGCTGCTGTAAGCATCCGCCGC
TCGGAATGGCGGGTACGAACAAACGGGAATACTGCGCTCAGCATGCCCCT
GACGGGATGGTCAACGTCTGCAGCAGGAAGTGGGAAAACAAAGACTGCGG
CAAGCTATCGTCGTTTGGAATGGCCAGAACCAAAACGGCGGAAGTCTGCG
CTCAGCACGCCCTAGACGGGATGGTCAACGTATTCAGCAAGAAGTGCCGA
ACCGAAGGCTGCCGGAAGCAATCGCCGTTTGGAGTGGCCGGTTCAAAAAC
GGCGGAGTACTGCGTACCACACGCCCCAGTCGGGATGAAAAGCGTCTGCA
GCAGAACGTGTAGGATAGAAGGCTGCTGTAAGCATCCGTCGCTCGTAATG
GCGGGTACGAACAAACGGGAATACTGCGCTCAACATGCCCCTAACGGGAT
GGTCAACGTCTGCAGCAGGCAATGTAAAACGCATAGCTGCTGCAAGTTAG
AAGTGGGAAAACAAAGACTGCGGCAAGCTATCGTCGTTTGGAATGGCCAG
AACCAAAACGGCGGAAGTCTGCGCTCAGCACGCCCTAGACGGGATGGTCA
ACGTATTCAGCAAGAAGTGCCGAACCGAAGGCTGCCGGAAGCAATCGCCG
TTTGGAGTGGCCGGTTCAAAAACGGCGGAGTACTGCGTACCACACGCCCC
AGTCGGGATGAAAAGCGTCTGCAGCAGAACGTGTAGGATAGAAGGCTGCT
GTAAGCATCCGTCGCTCGTAATGGCGGGTACGAACAAACGGGAATACTGC
GCTCAACATGCCCCTAACGGGATGGTCAACGTCTGCAGCAGGCAATGTAA
AACGCATAGCTGCTGCAAGTTACTATCGTCGTTCGGAATAGCCAGAACCA
AAACGGCGGAGGTCTGCGCTCAGCACGCCCTAGACGGGATGGTCCTATCG
TCGTTCGGAATAGCCAGAACCAAAACGGCGGAGGTCTGCGCTCAGCACGC
CCTAGACGGGATGGTC
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