mRNA_F-distichus_contig98887.19327.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98887.19327.1
Unique NamemRNA_F-distichus_contig98887.19327.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 VSYFSSYGPTQDNRIKPELVAPGDMV--RAWSRQRNY 105
            ++YFSS+GPT DNRIKPE+VAPGDM+   A S   NY
Sbjct:  806 MAYFSSFGPTLDNRIKPEVVAPGDMIYSAAGSGDGNY 842
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BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:    1 VSYFSSYGPTQDNRIKPELVAPGDMV 78
            V+ FSSYGPTQD RIKPE+VAPGD V
Sbjct:  640 VAVFSSYGPTQDGRIKPEVVAPGDAV 665
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BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 48.1 bits (113), Expect = 2.710e-5
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:    1 VSYFSSYGPTQDNRIKPELVAPGDMV 78
            V+ FSSYGPTQD RIKPE+VAPGD +
Sbjct:  644 VAQFSSYGPTQDGRIKPEVVAPGDAI 669
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BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Match: D8LBZ2_ECTSI (Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ2_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 2.710e-5
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:    1 VSYFSSYGPTQDNRIKPELVAPGDMV 78
            ++YFSS+GPT D RIKPE+VAPGDM+
Sbjct:  523 MAYFSSFGPTLDGRIKPEVVAPGDMI 548
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BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Match: A0A2I6U1Q9_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1Q9_SACJA)

HSP 1 Score: 47.4 bits (111), Expect = 5.080e-5
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:    1 VSYFSSYGPTQDNRIKPELVAPGD 72
            V+ FSSYGPTQD RIKPE+VAPGD
Sbjct:  401 VAQFSSYGPTQDGRIKPEVVAPGD 424
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BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Match: A0A2E8U767_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8U767_9EURY)

HSP 1 Score: 46.6 bits (109), Expect = 9.460e-5
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    7 YFSSYGPTQDNRIKPELVAPGDMVRAWSRQ 96
            Y+SS GPT+D RIKP+LVAPGD VR+   Q
Sbjct:  454 YWSSRGPTEDGRIKPDLVAPGDYVRSCKSQ 483
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98887.19327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JKA8_9PHAE1.610e-664.86Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1S5_SACJA1.980e-580.77Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A2I6U1R2_SACJA2.710e-576.92Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
D8LBZ2_ECTSI2.710e-573.08Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculos... [more]
A0A2I6U1Q9_SACJA5.080e-583.33Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A2E8U767_9EURY9.460e-566.67Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98887contigF-distichus_contig98887:1377..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.5930977-CDS-F-distichus_contig98887:1376..14871622931169.5930977-CDS-F-distichus_contig98887:1376..1487Fucus distichus monoicousCDSF-distichus_contig98887 1377..1487 +
1690886188.6534462-CDS-F-distichus_contig98887:1376..14871690886188.6534462-CDS-F-distichus_contig98887:1376..1487Fucus distichus monoicousCDSF-distichus_contig98887 1377..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98887.19327.1prot_F-distichus_contig98887.19327.1Fucus distichus monoicouspolypeptideF-distichus_contig98887 1377..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98887.19327.1

>prot_F-distichus_contig98887.19327.1 ID=prot_F-distichus_contig98887.19327.1|Name=mRNA_F-distichus_contig98887.19327.1|organism=Fucus distichus monoicous|type=polypeptide|length=37bp
VSYFSSYGPTQDNRIKPELVAPGDMVRAWSRQRNYII
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mRNA from alignment at F-distichus_contig98887:1377..1487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98887.19327.1 ID=mRNA_F-distichus_contig98887.19327.1|Name=mRNA_F-distichus_contig98887.19327.1|organism=Fucus distichus monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at F-distichus_contig98887:1377..1487+ (Fucus distichus monoicous)
GTATCTTACTTCAGCTCCTACGGTCCTACTCAAGACAATCGCATTAAACC
GGAGCTTGTGGCCCCGGGCGACATGGTACGTGCGTGGTCTCGTCAACGTA
ACTACATTATC
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Coding sequence (CDS) from alignment at F-distichus_contig98887:1377..1487+

>mRNA_F-distichus_contig98887.19327.1 ID=mRNA_F-distichus_contig98887.19327.1|Name=mRNA_F-distichus_contig98887.19327.1|organism=Fucus distichus monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at F-distichus_contig98887:1377..1487+ (Fucus distichus monoicous)
GTATCTTACTTCAGCTCCTACGGTCCTACTCAAGACAATCGCATTAAACC
GGAGCTTGTGGCCCCGGGCGACATGGTACGTGCGTGGTCTCGTCAACGTA
ACTACATTATCGTATCTTACTTCAGCTCCTACGGTCCTACTCAAGACAAT
CGCATTAAACCGGAGCTTGTGGCCCCGGGCGACATGGTACGTGCGTGGTC
TCGTCAACGTAACTACATTATC
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