mRNA_F-distichus_contig9875.19314.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9875.19314.1
Unique NamemRNA_F-distichus_contig9875.19314.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9875.19314.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.860e-41
Identity = 127/313 (40.58%), Postives = 159/313 (50.80%), Query Frame = 1 
Query:    1 SGENHNKRQDLLLREGLNKPKKSSLLGIGTADLLSAGAEDAFSKAIYDPAKLCGREGLVEISIPGRYSPRKIA----AKSFQGSDRWPF------------SSVAEMGNVFRVVPNGINGYSHTLPYRTGAAVHGIAPPKRLSGLKSAPTLRQRQKAPDLLSPATGQ-LSQDGNSGSSRSGSGNTLNTGEQSKTSRLASVDEVQVLPGATVEGGCFDDGRHGFDKSGRGKGWRSSSSQPEFDTIRTSSASARVGGPATRAFLKTSAS-DGCLITTRLP-------STLVRTATPAQRRDANQLALDFAAVRSL 864
            SG+NH++RQDLL REGLNKPKKS+LLG+GTADL SAGA D FSK+IYDPAK C  EGLVE   PGRY+PRK+     A +    D  P             SS   +  VFRVVPNG+  +S T+  R GA V GIAP KRL G +S PT+R  +   ++    TG  L +     S   G G+  +TG   +  R A     + L  AT   G    G  G          R             +   AR     T  F+K +AS + C  T R P       + L R  +PA+RR  +QL LD A +RSL
Sbjct:  114 SGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDTPPLRQGQEKSGQRSCSSPGALDTVFRVVPNGLGNHS-TVGGRGGATVAGIAPCKRLCGSRSTPTIRSPENKAEV---GTGTPLRKSSPMRSPSPGGGSRRHTGSGGEGGRGAGSVFAERLLSATS--GSARRGSRGLT--------RXXXXXXXXXXXXXTQGVARATTAGTEGFVKKTASPEDC--TRRSPGEGGPGSARLSRGQSPAERRSNDQLTLDLATIRSL 410
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BLAST of mRNA_F-distichus_contig9875.19314.1 vs. uniprot
Match: A0A7S4DG49_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG49_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 1.130e-8
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 SGENHNKRQDLLLREGLNKPKKSSLLGIGTADLLSAGAEDAFSKAIYDPAKLCGREGLVEISIPGRYSP 207
            SGE H++RQD+L+REGL  PK+SS+LG G  D+ S G ED  +K+ Y P +    EG  E +  GR++P
Sbjct:   43 SGEQHDRRQDVLVREGLVAPKQSSVLGYGRRDVYSYGVEDQLAKSNYCPQEKIKVEGHFERNRGGRWTP 111
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9875.19314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G928_ECTSI3.860e-4140.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DG49_HETAK1.130e-847.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9875contigF-distichus_contig9875:10188..11060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D7G928
Hectar predicted targeting categoryother localisation
EggNOG OGs2EXPF@1,2SZAY@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size873
Cds size873
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.9943426-CDS-F-distichus_contig9875:10187..110601622931167.9943426-CDS-F-distichus_contig9875:10187..11060Fucus distichus monoicousCDSF-distichus_contig9875 10188..11060 -
1690886187.9293816-CDS-F-distichus_contig9875:10187..110601690886187.9293816-CDS-F-distichus_contig9875:10187..11060Fucus distichus monoicousCDSF-distichus_contig9875 10188..11060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9875.19314.1prot_F-distichus_contig9875.19314.1Fucus distichus monoicouspolypeptideF-distichus_contig9875 10188..11060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9875.19314.1

>prot_F-distichus_contig9875.19314.1 ID=prot_F-distichus_contig9875.19314.1|Name=mRNA_F-distichus_contig9875.19314.1|organism=Fucus distichus monoicous|type=polypeptide|length=291bp
SGENHNKRQDLLLREGLNKPKKSSLLGIGTADLLSAGAEDAFSKAIYDPA
KLCGREGLVEISIPGRYSPRKIAAKSFQGSDRWPFSSVAEMGNVFRVVPN
GINGYSHTLPYRTGAAVHGIAPPKRLSGLKSAPTLRQRQKAPDLLSPATG
QLSQDGNSGSSRSGSGNTLNTGEQSKTSRLASVDEVQVLPGATVEGGCFD
DGRHGFDKSGRGKGWRSSSSQPEFDTIRTSSASARVGGPATRAFLKTSAS
DGCLITTRLPSTLVRTATPAQRRDANQLALDFAAVRSLDL*
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mRNA from alignment at F-distichus_contig9875:10188..11060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9875.19314.1 ID=mRNA_F-distichus_contig9875.19314.1|Name=mRNA_F-distichus_contig9875.19314.1|organism=Fucus distichus monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at F-distichus_contig9875:10188..11060- (Fucus distichus monoicous)
AGTGGCGAAAACCACAATAAACGACAGGACCTTTTGCTGCGCGAGGGCCT
CAACAAGCCCAAGAAATCTTCTCTCCTTGGCATAGGAACTGCTGATCTAT
TGTCCGCCGGCGCCGAGGATGCGTTTTCCAAGGCCATATATGACCCCGCG
AAACTTTGTGGCCGTGAGGGCCTCGTCGAAATCTCCATCCCTGGTCGTTA
CTCACCACGTAAGATAGCAGCAAAATCATTTCAAGGTAGCGACCGGTGGC
CCTTTTCATCGGTCGCCGAGATGGGCAACGTGTTCCGCGTCGTCCCGAAT
GGGATCAATGGCTATAGCCACACGCTCCCGTACAGAACAGGGGCAGCAGT
CCACGGAATCGCGCCTCCCAAACGGTTGAGTGGATTGAAGAGCGCACCAA
CCCTCCGCCAGCGGCAGAAAGCGCCCGACCTTTTGTCGCCAGCGACAGGC
CAACTGTCCCAAGATGGAAATAGCGGCAGTAGCCGCAGCGGCAGTGGCAA
CACGCTAAATACAGGAGAACAGAGCAAGACCTCCAGATTGGCGTCAGTAG
ACGAAGTGCAAGTCTTGCCAGGCGCTACGGTGGAAGGGGGCTGTTTCGAC
GACGGTCGACACGGCTTTGATAAAAGTGGTCGAGGCAAAGGTTGGAGATC
AAGCAGTTCGCAGCCTGAATTTGACACAATCAGAACTAGTAGTGCGAGTG
CGCGGGTCGGGGGCCCGGCAACGCGAGCTTTCTTGAAAACATCGGCATCA
GATGGCTGTTTAATTACAACGAGGTTGCCCTCTACGCTGGTTAGGACTGC
CACCCCGGCGCAGCGAAGGGATGCGAATCAGTTGGCCTTGGATTTCGCCG
CGGTACGCTCGCTCGATTTGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig9875:10188..11060-

>mRNA_F-distichus_contig9875.19314.1 ID=mRNA_F-distichus_contig9875.19314.1|Name=mRNA_F-distichus_contig9875.19314.1|organism=Fucus distichus monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at F-distichus_contig9875:10188..11060- (Fucus distichus monoicous)
AGTGGCGAAAACCACAATAAACGACAGGACCTTTTGCTGCGCGAGGGCCT
CAACAAGCCCAAGAAATCTTCTCTCCTTGGCATAGGAACTGCTGATCTAT
TGTCCGCCGGCGCCGAGGATGCGTTTTCCAAGGCCATATATGACCCCGCG
AAACTTTGTGGCCGTGAGGGCCTCGTCGAAATCTCCATCCCTGGTCGTTA
CTCACCACGTAAGATAGCAGCAAAATCATTTCAAGGTAGCGACCGGTGGC
CCTTTTCATCGGTCGCCGAGATGGGCAACGTGTTCCGCGTCGTCCCGAAT
GGGATCAATGGCTATAGCCACACGCTCCCGTACAGAACAGGGGCAGCAGT
CCACGGAATCGCGCCTCCCAAACGGTTGAGTGGATTGAAGAGCGCACCAA
CCCTCCGCCAGCGGCAGAAAGCGCCCGACCTTTTGTCGCCAGCGACAGGC
CAACTGTCCCAAGATGGAAATAGCGGCAGTAGCCGCAGCGGCAGTGGCAA
CACGCTAAATACAGGAGAACAGAGCAAGACCTCCAGATTGGCGTCAGTAG
ACGAAGTGCAAGTCTTGCCAGGCGCTACGGTGGAAGGGGGCTGTTTCGAC
GACGGTCGACACGGCTTTGATAAAAGTGGTCGAGGCAAAGGTTGGAGATC
AAGCAGTTCGCAGCCTGAATTTGACACAATCAGAACTAGTAGTGCGAGTG
CGCGGGTCGGGGGCCCGGCAACGCGAGCTTTCTTGAAAACATCGGCATCA
GATGGCTGTTTAATTACAACGAGGTTGCCCTCTACGCTGGTTAGGACTGC
CACCCCGGCGCAGCGAAGGGATGCGAATCAGTTGGCCTTGGATTTCGCCG
CGGTACGCTCGCTCGATTTGTAAAGTGGCGAAAACCACAATAAACGACAG
GACCTTTTGCTGCGCGAGGGCCTCAACAAGCCCAAGAAATCTTCTCTCCT
TGGCATAGGAACTGCTGATCTATTGTCCGCCGGCGCCGAGGATGCGTTTT
CCAAGGCCATATATGACCCCGCGAAACTTTGTGGCCGTGAGGGCCTCGTC
GAAATCTCCATCCCTGGTCGTTACTCACCACGTAAGATAGCAGCAAAATC
ATTTCAAGGTAGCGACCGGTGGCCCTTTTCATCGGTCGCCGAGATGGGCA
ACGTGTTCCGCGTCGTCCCGAATGGGATCAATGGCTATAGCCACACGCTC
CCGTACAGAACAGGGGCAGCAGTCCACGGAATCGCGCCTCCCAAACGGTT
GAGTGGATTGAAGAGCGCACCAACCCTCCGCCAGCGGCAGAAAGCGCCCG
ACCTTTTGTCGCCAGCGACAGGCCAACTGTCCCAAGATGGAAATAGCGGC
AGTAGCCGCAGCGGCAGTGGCAACACGCTAAATACAGGAGAACAGAGCAA
GACCTCCAGATTGGCGTCAGTAGACGAAGTGCAAGTCTTGCCAGGCGCTA
CGGTGGAAGGGGGCTGTTTCGACGACGGTCGACACGGCTTTGATAAAAGT
GGTCGAGGCAAAGGTTGGAGATCAAGCAGTTCGCAGCCTGAATTTGACAC
AATCAGAACTAGTAGTGCGAGTGCGCGGGTCGGGGGCCCGGCAACGCGAG
CTTTCTTGAAAACATCGGCATCAGATGGCTGTTTAATTACAACGAGGTTG
CCCTCTACGCTGGTTAGGACTGCCACCCCGGCGCAGCGAAGGGATGCGAA
TCAGTTGGCCTTGGATTTCGCCGCGGTACGCTCGCTCGATTTGTAA
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