mRNA_F-distichus_contig9873.19311.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9873.19311.1
Unique NamemRNA_F-distichus_contig9873.19311.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9873.19311.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.400e-15
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    4 MGSHIDAMGLSDAVRGVNSAGVAQFDPVSMVAWRQNQALDRLKTEKFERFKEYFTEKEGLSRLDVTGA 207
            +G HIDAMGL+ A +G++ +GVAQFD  SMVAWR+ Q L+R+K+E+ ER ++ FT++EGL+ LD++GA
Sbjct:   13 VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGA 80
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9873.19311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI9.400e-1555.88Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9873contigF-distichus_contig9873:3..2338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue6.2e-15
Seed eggNOG ortholog2880.D8LPS0
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons6
Model size833
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9873.19311.1prot_F-distichus_contig9873.19311.1Fucus distichus monoicouspolypeptideF-distichus_contig9873 1854..2335 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.3705196-UTR-F-distichus_contig9873:2..1131622931167.3705196-UTR-F-distichus_contig9873:2..113Fucus distichus monoicousUTRF-distichus_contig9873 3..113 -
1690886187.5829694-UTR-F-distichus_contig9873:2..1131690886187.5829694-UTR-F-distichus_contig9873:2..113Fucus distichus monoicousUTRF-distichus_contig9873 3..113 -
1622931167.3899999-UTR-F-distichus_contig9873:318..4261622931167.3899999-UTR-F-distichus_contig9873:318..426Fucus distichus monoicousUTRF-distichus_contig9873 319..426 -
1690886187.6016774-UTR-F-distichus_contig9873:318..4261690886187.6016774-UTR-F-distichus_contig9873:318..426Fucus distichus monoicousUTRF-distichus_contig9873 319..426 -
1622931167.4106898-UTR-F-distichus_contig9873:811..9671622931167.4106898-UTR-F-distichus_contig9873:811..967Fucus distichus monoicousUTRF-distichus_contig9873 812..967 -
1690886187.612618-UTR-F-distichus_contig9873:811..9671690886187.612618-UTR-F-distichus_contig9873:811..967Fucus distichus monoicousUTRF-distichus_contig9873 812..967 -
1622931167.43226-UTR-F-distichus_contig9873:1234..13831622931167.43226-UTR-F-distichus_contig9873:1234..1383Fucus distichus monoicousUTRF-distichus_contig9873 1235..1383 -
1690886187.6229587-UTR-F-distichus_contig9873:1234..13831690886187.6229587-UTR-F-distichus_contig9873:1234..1383Fucus distichus monoicousUTRF-distichus_contig9873 1235..1383 -
1622931167.4524045-UTR-F-distichus_contig9873:1754..18531622931167.4524045-UTR-F-distichus_contig9873:1754..1853Fucus distichus monoicousUTRF-distichus_contig9873 1755..1853 -
1690886187.637891-UTR-F-distichus_contig9873:1754..18531690886187.637891-UTR-F-distichus_contig9873:1754..1853Fucus distichus monoicousUTRF-distichus_contig9873 1755..1853 -
1622931167.5944028-UTR-F-distichus_contig9873:2335..23381622931167.5944028-UTR-F-distichus_contig9873:2335..2338Fucus distichus monoicousUTRF-distichus_contig9873 2336..2338 -
1690886187.6913903-UTR-F-distichus_contig9873:2335..23381690886187.6913903-UTR-F-distichus_contig9873:2335..2338Fucus distichus monoicousUTRF-distichus_contig9873 2336..2338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.4723418-CDS-F-distichus_contig9873:1853..19071622931167.4723418-CDS-F-distichus_contig9873:1853..1907Fucus distichus monoicousCDSF-distichus_contig9873 1854..1907 -
1690886187.6556044-CDS-F-distichus_contig9873:1853..19071690886187.6556044-CDS-F-distichus_contig9873:1853..1907Fucus distichus monoicousCDSF-distichus_contig9873 1854..1907 -
1622931167.5138898-CDS-F-distichus_contig9873:2182..23351622931167.5138898-CDS-F-distichus_contig9873:2182..2335Fucus distichus monoicousCDSF-distichus_contig9873 2183..2335 -
1690886187.6695015-CDS-F-distichus_contig9873:2182..23351690886187.6695015-CDS-F-distichus_contig9873:2182..2335Fucus distichus monoicousCDSF-distichus_contig9873 2183..2335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9873.19311.1

>prot_F-distichus_contig9873.19311.1 ID=prot_F-distichus_contig9873.19311.1|Name=mRNA_F-distichus_contig9873.19311.1|organism=Fucus distichus monoicous|type=polypeptide|length=69bp
MGSHIDAMGLSDAVRGVNSAGVAQFDPVSMVAWRQNQALDRLKTEKFERF
KEYFTEKEGLSRLDVTGA*
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mRNA from alignment at F-distichus_contig9873:3..2338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9873.19311.1 ID=mRNA_F-distichus_contig9873.19311.1|Name=mRNA_F-distichus_contig9873.19311.1|organism=Fucus distichus monoicous|type=mRNA|length=2336bp|location=Sequence derived from alignment at F-distichus_contig9873:3..2338- (Fucus distichus monoicous)
CAGATGGGTAGCCACATCGACGCGATGGGACTCTCTGACGCGGTCCGAGG
TGTCAACTCGGCCGGGGTCGCCCAGTTCGACCCTGTCTCCATGGTAGCCT
GGAGGCAAAATCAGGCCCTCGATCGCTTGAAAACCGAGAAATTCGAGCGC
TTTAAGGTAAGCTCCTTGCCTCCCCACTTTATGATAAGATGAGTTAATAT
CACAGTCCTCTCGCTGAATAAGTTGGGGCTCTTAATAGCCTACGCGATTT
GCCAAATCTCCCCTTGGCGGCTTCCTAGCTACTCAAAACTGGACGCATAT
CCCCCTGTCGGGGGTGGTAGCCTCTAAATGCTGAGAGTGATCCCGGGAAA
TATGTTGTCACACCCTTTGGCACGAACAATCGATCCACTAGTACTGCTTT
CGACGGACGAAACCGTGCGGTTGGGACGCAGGAGTACTTCACGGAGAAAG
AAGGTCTCTCCCGGCTTGATGTCACCGGAGCATAGGCATAGGGGATGTCG
GTCTTTCTGCCTTGACCGCACAGTGCCGCGGCCTTCAGCATCTTAACATA
TCCGGTGCTCATCAAGTGACGGATGTTGCTATACGTAAGTGCTTGCGGTA
CGCAGGACTTGCGACCGATACGGCTGTCGGGAACAGACAAGGGCCTATAA
AACGAGCCATGGGTCTTTCGACGAACTTTACGGATTGTGCCGGTTCCATA
GCGAGCAAAAAATGGTTTCAGCGGGCGTAGAGAACAGCTATACCCCGCGC
ACGTCGGAGAGTAAATGGTCGAACCTTAGTATGTGGACGAAGAGATTCCG
TTGAGGAGTAACACACAACACCCTTTGAAGACACAACGCTCACGGGATGG
GTACAAGCACGACTAGTACTATCCTCGAGGCACCCACAAAGAGATCGGCA
GTCATTCACTTTTTTCTCTCAGTGTCGACCAACTGTGTGGGGTTGTCGAA
CTCAGGTTCCCTCGCGGTGAACTGCACGGGCCTCACTCGACTCCACCTTC
GCGAGTGCCATGGAATCAACGGCCCGGGTCTAGCGCCGTTGGGCGAGTGC
TGTCTGAAGTTGGTGGATCTCGATCTATCGGGTTGCAAGAAGGCGAGTAC
GCTCGTTACCAATGTAACTCCGCCATCAGTACATTCACTGGGTGCTCTTG
CGCCCGCGCTGTGAGTCGCTGTATCGCTGCGCGTCGGAGCTTCGGACCCG
GGAGTTGCCCACACGCTTGATACATCCTGAAAACCCATGCCACGCTTCCC
ATCCTATCACGGTGCACAACACACTCCTGGCACTCATCCCTCAAAGACCC
TGTCGTCGCTTCAGCGAGCTACTGCTCCGACATCTCTTACTATCGAGCGT
CCCTCGTGCGATGTCCGGCAGGTTGGGGACTGGGTTTTGACGAGGATATT
TCGCGGGTGTCACGAACTGAAAACGGTTTCTCTCGCCCGGTGTCCTAGAG
TAGGAGACGAAGCACTGAAAGAGCTGGGTGTGGGATGCCGGGCACTCATC
AGGCTGGATTTGCGAGATTGTACTCTGGTGATGATCCAAACTTGAAGAGT
TTTGCCGGGTCGACAAGAACCGAGATTAACAATACGTTCATGCTGGGGTG
TACGGTCGTACGAATGATGTTTTGTGCTATTTTTCTACTGCGTACCGTAT
TGTTTAGGTGAACTTAGAGTCATTCGACGAGAGACTCGACCCCGCGCGCT
GCAAATGAATGTCTTTCAAATCTTAACGACTTTAGCAGATGAATCGTTGA
CCGCATAAGAATTTAGCAGCCACGGCATGAGTGTTGGTGTGCAGCCTTTC
GCAGGCCTGTAGTACGTCAGATATAGATGACAATATCGATTAATCCCTCA
TTCGTTACTTCTCCAAAACCTTTCCCGCGTCGCACTTCCTTCAAACTGAA
TATGTTCGCAAGACATCCGACACGGGTCTACTAGAGGTAGCGAGACGTTG
CAGCGCACTCGTTAAACTGGACCTATCGCGGTCAGAGCTCCCTTCTAACA
TTGGTGACGTGACCTTGCTGGTGAGTCGGGAGGCAGACCAGACAGCCCTG
CGTAGGAGCATCCACCATCGGTTTACGGGTGGTATGACAGAGTGCGGAGG
TGTAAAGAACCGCAACATTTTACTGTCTCCTTCCCATCTACCTCCTCTCC
TTCGCCCAACCGCGCTCCCTCCGCCTCGTGATGAATCCCACGAGATTACT
TCGTACGCTCAAAAAAATATTAAAGGCGTTAGGTGAGGGATGCCCGGGAC
TACAGCGGCTGGAAGCTAAAGGTTGTGGCGGCATCACTGACGTTGGGCTT
ACGTGGATGTCCGACGGATGCCCAAAACTGGAGTAC
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Coding sequence (CDS) from alignment at F-distichus_contig9873:3..2338-

>mRNA_F-distichus_contig9873.19311.1 ID=mRNA_F-distichus_contig9873.19311.1|Name=mRNA_F-distichus_contig9873.19311.1|organism=Fucus distichus monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at F-distichus_contig9873:3..2338- (Fucus distichus monoicous)
ATGGGTAGCCACATCGACGCGATGGGACTCTCTGACGCGGTCCGAGGTGT
CAACTCGGCCGGGGTCGCCCAGTTCGACCCTGTCTCCATGGTAGCCTGGA
GGCAAAATCAGGCCCTCGATCGCTTGAAAACCGAGAAATTCGAGCGCTTT
AAGATGGGTAGCCACATCGACGCGATGGGACTCTCTGACGCGGTCCGAGG
TGTCAACTCGGCCGGGGTCGCCCAGTTCGACCCTGTCTCCATGGTAGCCT
GGAGGCAAAATCAGGCCCTCGATCGCTTGAAAACCGAGAAATTCGAGCGC
TTTAAGGAGTACTTCACGGAGAAAGAAGGTCTCTCCCGGCTTGATGTCAC
CGGAGCATAGGAGTACTTCACGGAGAAAGAAGGTCTCTCCCGGCTTGATG
TCACCGGAGCATAG
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