mRNA_F-distichus_contig98714.19309.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98714.19309.1
Unique NamemRNA_F-distichus_contig98714.19309.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: D7FSU8_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU8_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.130e-44
Identity = 70/100 (70.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 WFPEAGTVKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEISA 300
            WF EA T+++RLYG + GA+ +G+VNLAFQFYDL++T+FI RL K EM+VHH LAT M YFL+RDCYVH+YAIFFLGISEVSS+PLVFVDV K+FP+++A
Sbjct:   77 WFGEANTIEDRLYGPSVGALVIGKVNLAFQFYDLVATVFIGRLCKVEMIVHHALATVMCYFLMRDCYVHYYAIFFLGISEVSSVPLVFVDVFKFFPDVAA 176
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A835YYL5_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.810e-29
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 WFPEAGTVKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEISAR 303
            W+ EA  V +RLY    GA  +  +NLAFQ +D  +T+ IA LRKPEM+VHHTLA  + +F+LRD Y H+YA FFLG++EVS+IPL  VDV K+F   +A+
Sbjct:   65 WYTEANDVHDRLYDVMVGAPVVTHINLAFQIFDFFATLLIADLRKPEMVVHHTLAVLLAFFVLRDAYGHYYACFFLGMTEVSAIPLCIVDVFKHFRGFAAQ 165
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A7S0SRD6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SRD6_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 1.200e-21
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   19 TVKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEISAR 303
            T ++RLYG +  AV + + N AFQ +D   ++F   L  PEML HH LA  M Y+ L   Y+H+YAI+F+G+ E+SS+PLV VD+ KY+PE+  R
Sbjct:   85 TPEQRLYGVSPFAVKVMQANFAFQVWDFSVSLFHRELNSPEMLTHHALAALMCYWGLTMPYMHYYAIYFMGVVEISSVPLVLVDICKYYPELQRR 179
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: C1MM19_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MM19_MICPC)

HSP 1 Score: 94.0 bits (232), Expect = 3.210e-21
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:   19 TVKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEISAR 303
            T K RLY  + GAV + + +LAF+ +D   + F   LR PEML HH LA  + Y+ L   Y+H+YA++F+G++E+SS+PLV VD  KY+P++S R
Sbjct:   87 TAKARLYATSPGAVRVLQAHLAFEAWDFGVSFFNKTLRAPEMLAHHALAALLCYWALTMPYMHYYAVYFMGVAEISSVPLVLVDAGKYYPDVSKR 181
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A7S0H760_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H760_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 4.140e-16
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 WFPEAGTVKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEI 294
            W   +  +++R+Y   EGAV L ++N AFQ YDL+ +M +  LRKP+ + HH +   + ++        +Y+IFF G+SEVSS+ L FV+  K FP +
Sbjct:   83 WANRSFMIEDRIYDYQEGAVILAKLNFAFQIYDLVISMSVKTLRKPDRVAHHFITAILAFWSYHYNLCLYYSIFFFGVSEVSSVFLTFVEFFKEFPSL 180
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A7S0WBE8_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WBE8_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.490e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   28 ERLY-GATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPE 291
            +RLY  A E    +  VNLAFQ +D L ++    L  PEML HH LA  +    L   +V +Y I+FLG++EVSS+PLV+VD  K++PE
Sbjct:    8 DRLYKAAPESGRQMILVNLAFQLWDFLISLNRKELNSPEMLAHHALAATLCAIGLHIGFVQYYGIYFLGVTEVSSLPLVYVDAAKFYPE 96
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A7S3XNJ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 2.620e-15
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   28 ERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARL-RKPEMLVHHTLATAMNYF-LLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFP 288
            +RLY        + +V LAFQF++ L T+F + L  +P MLVHH +  ++ +F      Y+H+Y++F+ G+SE+SSIPLVFV++ +YFP
Sbjct:   82 DRLYKFNMAGQDIAKVQLAFQFFNFLVTLFESELANRPVMLVHHAVTASLAWFGTYHATYLHYYSLFYYGLSEISSIPLVFVELFRYFP 170
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: K8EC96_9CHLO (TLC domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EC96_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-14
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    4 FPEAGTVKERLYG-ATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPE 291
            F  + T +ERL+G  +E    +G V +AFQ +D + ++F + L   EML+HH +   + Y++L   Y+ +Y ++F+G+ E SS+PL  VD +++FP+
Sbjct:   89 FQSSRTAEERLFGPVSENVRKIGEVQIAFQAWDFVISLFNSELNSVEMLLHHAMTGLLCYWMLTIPYMAWYGVYFMGVCETSSLPLSVVDFMRFFPD 185
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A7S2H2Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2Q2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.200e-14
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   52 GAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLVHHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFP 288
            G+  LG +  +FQ +DL+  + I  LRKPEMLVHHTL T + + +     +H  ++FFLG+SE+  +PL FVD   + P
Sbjct:   23 GSEVLGVLQASFQVWDLVMALVIPELRKPEMLVHHTLVTYVAFAVFDQGVMHEPSLFFLGLSEIQGVPLTFVDFFTHIP 101
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BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Match: A0A7S3XQI7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQI7_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 1.360e-12
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   22 VKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPE-MLVHHTLATAMNYF-LLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEISAR 303
            V++RLY     A  L ++NLAFQ +D ++T    ++ +   ML HH +A +  +  +    Y+H+Y +F+ G SE+S++PLVFVD+ KYFP++  +
Sbjct:   93 VEDRLYQNIGPAEKLIKINLAFQTFDFVTTFLDKQMHQRSIMLAHHFVAGSCAFLSVYHATYLHYYMVFYTGCSEISTVPLVFVDLFKYFPKVGEK 188
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98714.19309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSU8_ECTSI2.130e-4470.00TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YYL5_9STRA3.810e-2953.47TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0SRD6_9CHLO1.200e-2147.37Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
C1MM19_MICPC3.210e-2146.32Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0H760_9EUKA4.140e-1638.78Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0WBE8_9CHLO1.490e-1546.07Hypothetical protein (Fragment) n=2 Tax=Ostreococc... [more]
A0A7S3XNJ4_HETAK2.620e-1542.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8EC96_9CHLO2.710e-1436.08TLC domain-containing protein n=1 Tax=Bathycoccus ... [more]
A0A7S2H2Q2_9STRA9.200e-1443.04Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XQI7_HETAK1.360e-1237.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98714contigF-distichus_contig98714:112..2138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.2e-34
Seed eggNOG ortholog2880.D7FSU8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TLC domain
EggNOG OGs2CZJX@1,2SAQJ@2759
Ec32 ortholog descriptionTRAM/LAG1/CLN8 homology domain
Ec32 orthologEc-19_001840.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98714.19309.1prot_F-distichus_contig98714.19309.1Fucus distichus monoicouspolypeptideF-distichus_contig98714 112..2138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.1831093-CDS-F-distichus_contig98714:111..2201622931167.1831093-CDS-F-distichus_contig98714:111..220Fucus distichus monoicousCDSF-distichus_contig98714 112..220 -
1690886187.497514-CDS-F-distichus_contig98714:111..2201690886187.497514-CDS-F-distichus_contig98714:111..220Fucus distichus monoicousCDSF-distichus_contig98714 112..220 -
1622931167.2019515-CDS-F-distichus_contig98714:1288..14131622931167.2019515-CDS-F-distichus_contig98714:1288..1413Fucus distichus monoicousCDSF-distichus_contig98714 1289..1413 -
1690886187.5094056-CDS-F-distichus_contig98714:1288..14131690886187.5094056-CDS-F-distichus_contig98714:1288..1413Fucus distichus monoicousCDSF-distichus_contig98714 1289..1413 -
1622931167.2173903-CDS-F-distichus_contig98714:2066..21381622931167.2173903-CDS-F-distichus_contig98714:2066..2138Fucus distichus monoicousCDSF-distichus_contig98714 2067..2138 -
1690886187.520077-CDS-F-distichus_contig98714:2066..21381690886187.520077-CDS-F-distichus_contig98714:2066..2138Fucus distichus monoicousCDSF-distichus_contig98714 2067..2138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98714.19309.1

>prot_F-distichus_contig98714.19309.1 ID=prot_F-distichus_contig98714.19309.1|Name=mRNA_F-distichus_contig98714.19309.1|organism=Fucus distichus monoicous|type=polypeptide|length=102bp
WFPEAGTVKERLYGATEGAVFLGRVNLAFQFYDLLSTMFIARLRKPEMLV
HHTLATAMNYFLLRDCYVHFYAIFFLGISEVSSIPLVFVDVLKYFPEISA
R*
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mRNA from alignment at F-distichus_contig98714:112..2138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98714.19309.1 ID=mRNA_F-distichus_contig98714.19309.1|Name=mRNA_F-distichus_contig98714.19309.1|organism=Fucus distichus monoicous|type=mRNA|length=2027bp|location=Sequence derived from alignment at F-distichus_contig98714:112..2138- (Fucus distichus monoicous)
TGGTTCCCGGAGGCCGGCACAGTCAAGGAGCGCCTTTATGGGGCGACAGA
GGGCGCTGTCTTCCTCGGGCGGGTGGGGGTTGGTAGGCATCCGCAGGCGG
AACAGTGGGGGGGGGGGGTGAATGCCTTCCAACACCGTGGCTCAGTCTGG
AGCACCATTTGCAGATGCCGCTGCCCCCCTCCCCCCCCAGGCTGTAGGTG
CTTTTTAACCCTCTTGGTACCCAATCTGCTTTTTCTATACAAAAATCAAC
ATAAAACTTGAACACGAGTTCTGAAAGGGTTAAGTCGTTGAAACAAAAAA
CTTCGTACGTGTTTGCGTCGCCATCGTGCCATTCGCTTATCTTACATATG
TACATACATGTAGTGTATCTGTGTCTATGTTTGTGTATGTGTGTGTATGT
GTGTCTTTTGGGCTGGCGGATGAATGGATCATAAATTTGTGTTACGGACT
GGCTCGGCGGTCAGGCCCTGTCCCGAGAGTTCCGATGAAACGAGAGGGGT
ACCGTATACTAAGTAATATTTTTGTATCATACCAAGATTTTTTTTAACAC
ACACTTGCTTACACGGCAAAAAAAAAGACAAAACGTTTGGAGCGCGCATG
CAGACTCTATCGGTGCTTGTCGGTGCGCCACCATCAACGTCATAGAGCCG
CTTCAAGCAGCCAGTTCTCCCGTCACCACCCTGCCCCCGCCCCTCACCAC
ACACACACCTTTTGACGCTTGCCAGGTGAACCTGGCCTTCCAGTTCTACG
ACCTCTTGTCGACGATGTTCATCGCCCGCCTCCGAAAGCCGGAGATGCTG
GTGCATCACACCCTCGCGACCGCCATGAACTACTTCCTGTTGAGAGACTG
GTGAGAGAACTGAGTCGTCTAGTCTATTTAGGGAAACGTGTGCTTACTGT
AGCCTGATGCAGTGCACTAAAAAGTACTGCCAGTATTTTAATATTGCACA
TAGACTAAAGGTTGTAGCGGGAAGGAGAAAAATAAATTCTACTGTACAGT
CAGTATCTTCTGAACCCATGCATGAGTCGATTTACTACACCCATCAACAA
CCAAAGCTTATGTTGCAGCTGACGTTTATCCAAGTCTTCCCTCGAGCATT
TGGCTAATCCTACCGTACTGCTTGTAGCCGATTTTGGTCAAGGTTAAAAT
CCCCTCCGACGGATACTATCCAACCCGCAACCCTCAAACGAACGAACGAA
CGGTTATAACCTGGAGGAAGGGGAGGGGCAATTGTTTAACAACCAACACC
CTAAGTTCCTTGAGTTACCCAATATTTTTGCATCGCCCTCCCTCCTGTAC
CGCTGCGTACAGTATATACCAGGTATACTATGTATTTATACTGTACACTA
CTACGGTTGTATGATGTCGCACGTCCCGCGGAAACATGGTGGGATAAATC
CATAAATCCTGGAAGAAAAGAGCGATCGATATATCGATCCCACATACTCC
ACATACTGTACTTCGGTAAAAGAACATACTTGGATACTGTACGAGTACTA
CGTACGAGGTCGCGTCTCCGGGGCCTCTAGGAGATCTGCACATTTCTTCC
CCCTCGCTGTTGGTGTTGTTTTGTTTTGAATATATACTGTACTACGAAGT
AATTGTCCAATATTGGAAAAAAAGCAAAATAAGTGTTGTCATGTTCGTTC
GTACTCACCACCCCACGGGGAGACCAGAACACGCTGCCCCAGCTATTATA
CTATTACTTTAGTACGGGTATGAAAACATGCCCTCGTCTTAACGCTTGCT
GGGGTTTTCATTTTTCTATCTCCGCCGCTTGTTTCATTTCGAGAGTTTTT
TGTTTGTACTTTTTTTTTCCGTCCTGAGACTATCTCCCCTTCCTTTGAAA
AACATTAATGTACTTGTACAGAAGTAGAAATACAAATTATTGCAATCTAC
GCTCGTTCGCTTTGGCAGCTACGTGCACTTCTACGCCATCTTCTTTCTCG
GCATCTCGGAGGTCAGCTCCATACCCCTCGTGTTCGTGGACGTCTTGAAG
TACTTCCCTGAGATATCTGCCAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig98714:112..2138-

>mRNA_F-distichus_contig98714.19309.1 ID=mRNA_F-distichus_contig98714.19309.1|Name=mRNA_F-distichus_contig98714.19309.1|organism=Fucus distichus monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at F-distichus_contig98714:112..2138- (Fucus distichus monoicous)
TGGTTCCCGGAGGCCGGCACAGTCAAGGAGCGCCTTTATGGGGCGACAGA
GGGCGCTGTCTTCCTCGGGCGGTGGTTCCCGGAGGCCGGCACAGTCAAGG
AGCGCCTTTATGGGGCGACAGAGGGCGCTGTCTTCCTCGGGCGGGTGAAC
CTGGCCTTCCAGTTCTACGACCTCTTGTCGACGATGTTCATCGCCCGCCT
CCGAAAGCCGGAGATGCTGGTGCATCACACCCTCGCGACCGCCATGAACT
ACTTCCTGTTGAGAGACTGGTGAACCTGGCCTTCCAGTTCTACGACCTCT
TGTCGACGATGTTCATCGCCCGCCTCCGAAAGCCGGAGATGCTGGTGCAT
CACACCCTCGCGACCGCCATGAACTACTTCCTGTTGAGAGACTGCTACGT
GCACTTCTACGCCATCTTCTTTCTCGGCATCTCGGAGGTCAGCTCCATAC
CCCTCGTGTTCGTGGACGTCTTGAAGTACTTCCCTGAGATATCTGCCAGG
TGACTACGTGCACTTCTACGCCATCTTCTTTCTCGGCATCTCGGAGGTCA
GCTCCATACCCCTCGTGTTCGTGGACGTCTTGAAGTACTTCCCTGAGATA
TCTGCCAGGTGA
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