mRNA_F-distichus_contig98703.19308.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98703.19308.1
Unique NamemRNA_F-distichus_contig98703.19308.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98703.19308.1 vs. uniprot
Match: A0A6H5KJR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR7_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 3.640e-47
Identity = 202/546 (37.00%), Postives = 241/546 (44.14%), Query Frame = 1 
Query:    7 SSNKLSVFDAMADLDLAVVQEEWNDFADETTAPPRSPTPPPSTPSGV---VVEESVQVVVAATAGVDATVVDFSGVKAEEVSVFSEGRGVGGFPSVTPKD----------------------AEDGGESDDWGAFEDAGEALAAVVAAVVKEKAIAASIMISSEAEGSEXXXXXXXXXXXXXXXXXGA-GDDGSAGLEPVLVVAPAKISLETEESXXXXXXXXXXXXE------------AGEEVGA--GHDGSAGSTVATEPD---DPFADIAPQTTFPPARPLAVERGVALEGEKEGRQDGESGDLEKSSPGTVEEFQRVMAAGLPLPLRALRDALSARGRLEEAVEVEKRMELPSLPTRA-GVPTASGDDFAGTKAIDVVGGCGSGGDGEDFGVDLERWRAAA--EQPPSPTIEELAGRVAAADAGRGERFLERFVRGRPPVEEEALAHGGAV-ALGAAFERQRAARRAAYVSRALGSLSVISRNEDNSA--------------------EIEPELELDLGLHSSHARATANLSDWARMTAFV 1443
            S  KLSVFD MADLDLAV QE+WNDFADETTAPPRSPTP             EE V+  V     +D  + +       E     +  GVG                               A  G E      F   G   A+  A++    A AA+      AEG++                 G  G    AG E          +      XXXXXXXXXX  E            AGEE G   G   S G +    P+   DPFADI P TT           G   E E+ GR   E                 V A GLPL LR LRDAL+ +GRLEEAVEV++RMELPS P R   VP +  D      A D       GG+ ED   DLERWR AA  +  P PT+E+LA  ++AADA RGE+F ERFVRGRPPVEEEA        AL  A +RQR+ARRA  +   L  L       D +A                    E E +LELDLGL +  AR+  +L+DWA M ++V
Sbjct:  394 SRTKLSVFDEMADLDLAVGQEDWNDFADETTAPPRSPTPSXXXXXXXXXXATEEVVKAAVVEEPAIDDAICNSDADIRGEPRPLDQDPGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHAWPGLEQQGMPLFSSEGAVAASAHASIADGAAPAAA------AEGAQGQDDEWGDFLDATAEGEGTTGQQHLAGPEGEATAVREDNAATXXXXXXXXXXXXXXGDEEWGTFADAPEAAAGEEAGLAIGDASSTGGSREAPPEEAVDPFADIEP-TTPXXXXXXXXXXGATAEDEEAGRLGSEEXXGXXXXXXXXXXXTTVTAPGLPLSLRGLRDALAKQGRLEEAVEVQRRMELPSSPPRTIDVPYSPED----VTAEDANAHADGGGEAED--ADLERWRGAAAGDLRPFPTVEDLAATMSAADAARGEKFRERFVRGRPPVEEEAXXXXXXXXALDVAVKRQRSARRAVCL---LSMLDAAGTAGDGAADKDVEDGRDRGLTSGGAVEKEEEDKLELDLGLDTRRARSPPSLADWAAMMSYV 923
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BLAST of mRNA_F-distichus_contig98703.19308.1 vs. uniprot
Match: D8LT09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT09_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.550e-32
Identity = 97/222 (43.69%), Postives = 121/222 (54.50%), Query Frame = 1 
Query:  841 VMAAGLPLPLRALRDALSARGRLEEAVEVEKRMELPSLPTRAGVPTA-SGDDFAGTKAIDVVGGCGSGGDGEDFGVDLERWRAAAEQP--PSPTIEELAGRVAAADAGRGERFLERFVRGRPPVEEEALAHGGAVA-LGAAFERQRAARRAAYVSRALGSLSV-----------------ISRNEDNSAEIEPELELDLGLHSSHARATANLSDWARMTAFV 1443
            V A GLPL LR LRDAL+ RGRLEEAVEV++RMELPS P    +    S +D     A D                DLERWRA A +   P PT+EELA  ++AADA RGE+F ERFVRGRPPVEEE          LG A  RQR+ARRA  +   L +                    ++    +  E + +LELDLGL +  AR+  +L+DWA M ++V
Sbjct:  177 VTAPGLPLSLRGLRDALAKRGRLEEAVEVQRRMELPSTPPPRAIDVPYSPEDVT---ADDDANXXXXXXXXXXXDADLERWRAVAAEDLRPFPTVEELAATMSAADAARGEKFRERFVRGRPPVEEEXXXXXXXXXXLGVAVRRQRSARRAVCLLSMLDAAGTAGDGAADKDLEDGRDGGLTSGGGDEKEEQDKLELDLGLDTRRARSPPSLADWAAMMSYV 395
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98703.19308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJR7_9PHAE3.640e-4737.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT09_ECTSI1.550e-3243.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98703contigF-distichus_contig98703:10..1815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-08_004390.1
Exons6
Model size1443
Cds size1443
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98703.19308.1prot_F-distichus_contig98703.19308.1Fucus distichus monoicouspolypeptideF-distichus_contig98703 10..1815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.0023026-CDS-F-distichus_contig98703:9..4911622931167.0023026-CDS-F-distichus_contig98703:9..491Fucus distichus monoicousCDSF-distichus_contig98703 10..491 -
1690886187.4210792-CDS-F-distichus_contig98703:9..4911690886187.4210792-CDS-F-distichus_contig98703:9..491Fucus distichus monoicousCDSF-distichus_contig98703 10..491 -
1622931167.0226386-CDS-F-distichus_contig98703:545..6861622931167.0226386-CDS-F-distichus_contig98703:545..686Fucus distichus monoicousCDSF-distichus_contig98703 546..686 -
1690886187.4336882-CDS-F-distichus_contig98703:545..6861690886187.4336882-CDS-F-distichus_contig98703:545..686Fucus distichus monoicousCDSF-distichus_contig98703 546..686 -
1622931167.0424786-CDS-F-distichus_contig98703:743..8301622931167.0424786-CDS-F-distichus_contig98703:743..830Fucus distichus monoicousCDSF-distichus_contig98703 744..830 -
1690886187.4495754-CDS-F-distichus_contig98703:743..8301690886187.4495754-CDS-F-distichus_contig98703:743..830Fucus distichus monoicousCDSF-distichus_contig98703 744..830 -
1622931167.0577023-CDS-F-distichus_contig98703:884..9691622931167.0577023-CDS-F-distichus_contig98703:884..969Fucus distichus monoicousCDSF-distichus_contig98703 885..969 -
1690886187.4591324-CDS-F-distichus_contig98703:884..9691690886187.4591324-CDS-F-distichus_contig98703:884..969Fucus distichus monoicousCDSF-distichus_contig98703 885..969 -
1622931167.0848458-CDS-F-distichus_contig98703:1056..11751622931167.0848458-CDS-F-distichus_contig98703:1056..1175Fucus distichus monoicousCDSF-distichus_contig98703 1057..1175 -
1690886187.4751194-CDS-F-distichus_contig98703:1056..11751690886187.4751194-CDS-F-distichus_contig98703:1056..1175Fucus distichus monoicousCDSF-distichus_contig98703 1057..1175 -
1622931167.1290736-CDS-F-distichus_contig98703:1286..18151622931167.1290736-CDS-F-distichus_contig98703:1286..1815Fucus distichus monoicousCDSF-distichus_contig98703 1287..1815 -
1690886187.485216-CDS-F-distichus_contig98703:1286..18151690886187.485216-CDS-F-distichus_contig98703:1286..1815Fucus distichus monoicousCDSF-distichus_contig98703 1287..1815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98703.19308.1

>prot_F-distichus_contig98703.19308.1 ID=prot_F-distichus_contig98703.19308.1|Name=mRNA_F-distichus_contig98703.19308.1|organism=Fucus distichus monoicous|type=polypeptide|length=481bp
AGSSNKLSVFDAMADLDLAVVQEEWNDFADETTAPPRSPTPPPSTPSGVV
VEESVQVVVAATAGVDATVVDFSGVKAEEVSVFSEGRGVGGFPSVTPKDA
EDGGESDDWGAFEDAGEALAAVVAAVVKEKAIAASIMISSEAEGSEEEWG
EFEEVPAGEEVGAGAGDDGSAGLEPVLVVAPAKISLETEESEDWGGFEEV
PVAEAGEEVGAGHDGSAGSTVATEPDDPFADIAPQTTFPPARPLAVERGV
ALEGEKEGRQDGESGDLEKSSPGTVEEFQRVMAAGLPLPLRALRDALSAR
GRLEEAVEVEKRMELPSLPTRAGVPTASGDDFAGTKAIDVVGGCGSGGDG
EDFGVDLERWRAAAEQPPSPTIEELAGRVAAADAGRGERFLERFVRGRPP
VEEEALAHGGAVALGAAFERQRAARRAAYVSRALGSLSVISRNEDNSAEI
EPELELDLGLHSSHARATANLSDWARMTAFV
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mRNA from alignment at F-distichus_contig98703:10..1815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98703.19308.1 ID=mRNA_F-distichus_contig98703.19308.1|Name=mRNA_F-distichus_contig98703.19308.1|organism=Fucus distichus monoicous|type=mRNA|length=1806bp|location=Sequence derived from alignment at F-distichus_contig98703:10..1815- (Fucus distichus monoicous)
GCTGGCAGCAGCAACAAGCTCTCGGTCTTCGACGCCATGGCCGACCTTGA
CCTCGCCGTCGTACAGGAGGAGTGGAACGACTTTGCGGACGAAACCACTG
CGCCGCCGCGTTCCCCTACCCCGCCCCCGTCGACGCCTTCGGGGGTGGTG
GTAGAAGAATCGGTACAAGTGGTCGTCGCTGCTACTGCAGGTGTAGATGC
TACCGTCGTTGACTTCAGCGGGGTCAAGGCGGAAGAAGTCTCGGTCTTTT
CGGAAGGTCGAGGAGTGGGGGGGTTCCCATCGGTGACGCCGAAGGATGCA
GAAGACGGAGGCGAATCCGACGACTGGGGAGCCTTTGAGGATGCGGGAGA
GGCGCTAGCGGCCGTGGTGGCAGCAGTAGTCAAAGAAAAAGCGATAGCAG
CTTCCATCATGATATCTTCGGAAGCGGAGGGAAGTGAAGAAGAGTGGGGT
GAGTTCGAAGAGGTTCCGGCGGGAGAGGAAGTGGGAGCAGGAGCGGGCGA
CGACGGCTCGGCGGGGCTAGAACCCGTCTGTGCGAAGGCAGGCGGAGATG
ATTTAGCCCCAGGAACAGCCGTCTGGGGAAACGTTGGGGCTGCGGGAGAC
GCGCTAGCGGCCGTGGCAGCAGCAATAGTCGTAGAGAAAGTGGTCGTAGC
TCCCGCCAAGATATCGTTGGAAACGGAGGAAAGTGAAGATTGGGGTGGGT
TTGAAGAGGTCCCAGTGGCAGAGGCGGGAGAGGAAGTGGGAGCGGGCCAC
GATGGCTCGGTGAGGCAAGAGCTCGTCTATGCAAAGGCAGGCGGAGATGA
TTTAGCCCCAGGAACAGCCATCGAGGACCCAACTGTTGAAACTAAGGCGG
GATCTACCGTGGCGACAGAACCCGATGACCCGTTCGCGGACATTGCACCC
CAAACCACGTTTCCACCGGCGCGCCCACTTGGTTCACCAATGCCGCCGCT
GGAACTCGAAGATCGCACTCTTTTAGGGGAGGGAGCGGTGGAACGTGGGG
TCGCTCTCGAAGGCGAAAAGGAGGGCAGGCAAGACGGTGAAAGCGGTGAC
TTGGAGAAGAGTTCACCCGGAAGTGTCGAACCCGAGCAACCAGGGGCCTC
GTTAGTCATCGGGAAGAAAAGAGTCGAAGCCGTAGAAGAATTCCAGAGGG
TAATGGCGGCGGGTCTACCGCTCCCCCTCCGCGCTCTGCGGGACGCGCTC
TCTGCGCGCGGGCGCCTGGAAGAGGCGGTGGAGGTCGAGAAGAGGATGGA
GCTGCCGTCGTTGCCGACGCGTGATGTGGGCGTCGAAGGCGATGAGACTG
CGGCAGGAGCAGGGGAGGGGGCAGGCGCGGGGGTACCGACTGCCTCGGGG
GACGACTTCGCAGGAACCAAGGCAATAGACGTAGTTGGAGGCTGTGGCAG
TGGCGGCGATGGAGAGGACTTCGGAGTCGATCTCGAGCGCTGGCGAGCGG
CCGCGGAACAGCCGCCATCCCCGACGATAGAAGAGCTTGCGGGACGAGTG
GCGGCCGCCGACGCCGGCCGCGGGGAAAGGTTCCTAGAGCGATTCGTCCG
CGGGCGCCCGCCGGTAGAAGAGGAGGCGTTAGCGCACGGCGGCGCGGTTG
CGCTGGGCGCCGCTTTCGAGAGGCAGCGCGCCGCCCGACGTGCTGCGTAC
GTGTCGAGGGCACTGGGCTCACTATCGGTGATCAGTCGCAACGAAGATAA
CTCCGCCGAGATAGAGCCGGAGCTAGAGTTAGATCTTGGGTTGCACTCTA
GCCACGCGAGGGCCACAGCGAACCTATCCGATTGGGCACGAATGACTGCG
TTTGTT
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Coding sequence (CDS) from alignment at F-distichus_contig98703:10..1815-

>mRNA_F-distichus_contig98703.19308.1 ID=mRNA_F-distichus_contig98703.19308.1|Name=mRNA_F-distichus_contig98703.19308.1|organism=Fucus distichus monoicous|type=CDS|length=2886bp|location=Sequence derived from alignment at F-distichus_contig98703:10..1815- (Fucus distichus monoicous)
GCTGGCAGCAGCAACAAGCTCTCGGTCTTCGACGCCATGGCCGACCTTGA
CCTCGCCGTCGTACAGGAGGAGTGGAACGACTTTGCGGACGAAACCACTG
CGCCGCCGCGTTCCCCTACCCCGCCCCCGTCGACGCCTTCGGGGGTGGTG
GTAGAAGAATCGGTACAAGTGGTCGTCGCTGCTACTGCAGGTGTAGATGC
TACCGTCGTTGACTTCAGCGGGGTCAAGGCGGAAGAAGTCTCGGTCTTTT
CGGAAGGTCGAGGAGTGGGGGGGTTCCCATCGGTGACGCCGAAGGATGCA
GAAGACGGAGGCGAATCCGACGACTGGGGAGCCTTTGAGGATGCGGGAGA
GGCGCTAGCGGCCGTGGTGGCAGCAGTAGTCAAAGAAAAAGCGATAGCAG
CTTCCATCATGATATCTTCGGAAGCGGAGGGAAGTGAAGAAGAGTGGGGT
GAGTTCGAAGAGGTTCCGGCGGGAGAGGAAGTGGGAGCAGGAGCGGGCGA
CGACGGCTCGGCGGGGCTAGAACCCGTCTGCTGGCAGCAGCAACAAGCTC
TCGGTCTTCGACGCCATGGCCGACCTTGACCTCGCCGTCGTACAGGAGGA
GTGGAACGACTTTGCGGACGAAACCACTGCGCCGCCGCGTTCCCCTACCC
CGCCCCCGTCGACGCCTTCGGGGGTGGTGGTAGAAGAATCGGTACAAGTG
GTCGTCGCTGCTACTGCAGGTGTAGATGCTACCGTCGTTGACTTCAGCGG
GGTCAAGGCGGAAGAAGTCTCGGTCTTTTCGGAAGGTCGAGGAGTGGGGG
GGTTCCCATCGGTGACGCCGAAGGATGCAGAAGACGGAGGCGAATCCGAC
GACTGGGGAGCCTTTGAGGATGCGGGAGAGGCGCTAGCGGCCGTGGTGGC
AGCAGTAGTCAAAGAAAAAGCGATAGCAGCTTCCATCATGATATCTTCGG
AAGCGGAGGGAAGTGAAGAAGAGTGGGGTGAGTTCGAAGAGGTTCCGGCG
GGAGAGGAAGTGGGAGCAGGAGCGGGCGACGACGGCTCGGCGGGGCTAGA
ACCCGTCTTGGTCGTAGCTCCCGCCAAGATATCGTTGGAAACGGAGGAAA
GTGAAGATTGGGGTGGGTTTGAAGAGGTCCCAGTGGCAGAGGCGGGAGAG
GAAGTGGGAGCGGGCCACGATGGCTCGTGGTCGTAGCTCCCGCCAAGATA
TCGTTGGAAACGGAGGAAAGTGAAGATTGGGGTGGGTTTGAAGAGGTCCC
AGTGGCAGAGGCGGGAGAGGAAGTGGGAGCGGGCCACGATGGCTCGGCGG
GATCTACCGTGGCGACAGAACCCGATGACCCGTTCGCGGACATTGCACCC
CAAACCACGTTTCCACCGGCGCGCCCACTTGGCGGGATCTACCGTGGCGA
CAGAACCCGATGACCCGTTCGCGGACATTGCACCCCAAACCACGTTTCCA
CCGGCGCGCCCACTTGCGGTGGAACGTGGGGTCGCTCTCGAAGGCGAAAA
GGAGGGCAGGCAAGACGGTGAAAGCGGTGACTTGGAGAAGAGTTCACCCG
GAACGGTGGAACGTGGGGTCGCTCTCGAAGGCGAAAAGGAGGGCAGGCAA
GACGGTGAAAGCGGTGACTTGGAGAAGAGTTCACCCGGAACCGTAGAAGA
ATTCCAGAGGGTAATGGCGGCGGGTCTACCGCTCCCCCTCCGCGCTCTGC
GGGACGCGCTCTCTGCGCGCGGGCGCCTGGAAGAGGCGGTGGAGGTCGAG
AAGAGGATGGAGCTGCCGTCGTTGCCGACGCCCGTAGAAGAATTCCAGAG
GGTAATGGCGGCGGGTCTACCGCTCCCCCTCCGCGCTCTGCGGGACGCGC
TCTCTGCGCGCGGGCGCCTGGAAGAGGCGGTGGAGGTCGAGAAGAGGATG
GAGCTGCCGTCGTTGCCGACGCGCGCGGGGGTACCGACTGCCTCGGGGGA
CGACTTCGCAGGAACCAAGGCAATAGACGTAGTTGGAGGCTGTGGCAGTG
GCGGCGATGGAGAGGACTTCGGAGTCGATCTCGAGCGCTGGCGAGCGGCC
GCGGAACAGCCGCCATCCCCGACGATAGAAGAGCTTGCGGGACGAGTGGC
GGCCGCCGACGCCGGCCGCGGGGAAAGGTTCCTAGAGCGATTCGTCCGCG
GGCGCCCGCCGGTAGAAGAGGAGGCGTTAGCGCACGGCGGCGCGGTTGCG
CTGGGCGCCGCTTTCGAGAGGCAGCGCGCCGCCCGACGTGCTGCGTACGT
GTCGAGGGCACTGGGCTCACTATCGGTGATCAGTCGCAACGAAGATAACT
CCGCCGAGATAGAGCCGGAGCTAGAGTTAGATCTTGGGTTGCACTCTAGC
CACGCGAGGGCCACAGCGAACCTATCCGATTGGGCACGAATGACTGCGTT
TGTTGCGCGGGGGTACCGACTGCCTCGGGGGACGACTTCGCAGGAACCAA
GGCAATAGACGTAGTTGGAGGCTGTGGCAGTGGCGGCGATGGAGAGGACT
TCGGAGTCGATCTCGAGCGCTGGCGAGCGGCCGCGGAACAGCCGCCATCC
CCGACGATAGAAGAGCTTGCGGGACGAGTGGCGGCCGCCGACGCCGGCCG
CGGGGAAAGGTTCCTAGAGCGATTCGTCCGCGGGCGCCCGCCGGTAGAAG
AGGAGGCGTTAGCGCACGGCGGCGCGGTTGCGCTGGGCGCCGCTTTCGAG
AGGCAGCGCGCCGCCCGACGTGCTGCGTACGTGTCGAGGGCACTGGGCTC
ACTATCGGTGATCAGTCGCAACGAAGATAACTCCGCCGAGATAGAGCCGG
AGCTAGAGTTAGATCTTGGGTTGCACTCTAGCCACGCGAGGGCCACAGCG
AACCTATCCGATTGGGCACGAATGACTGCGTTTGTT
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