mRNA_F-distichus_contig987.19306.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig987.19306.1
Unique NamemRNA_F-distichus_contig987.19306.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig987.19306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig987contigF-distichus_contig987:20072..22844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005680.1
Exons4
Model size1162
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig987.19306.1prot_F-distichus_contig987.19306.1Fucus distichus monoicouspolypeptideF-distichus_contig987 21208..22844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.845752-UTR-F-distichus_contig987:20071..208801622931166.845752-UTR-F-distichus_contig987:20071..20880Fucus distichus monoicousUTRF-distichus_contig987 20072..20880 -
1690886187.3563328-UTR-F-distichus_contig987:20071..208801690886187.3563328-UTR-F-distichus_contig987:20071..20880Fucus distichus monoicousUTRF-distichus_contig987 20072..20880 -
1622931166.862453-UTR-F-distichus_contig987:21197..212071622931166.862453-UTR-F-distichus_contig987:21197..21207Fucus distichus monoicousUTRF-distichus_contig987 21198..21207 -
1690886187.3686883-UTR-F-distichus_contig987:21197..212071690886187.3686883-UTR-F-distichus_contig987:21197..21207Fucus distichus monoicousUTRF-distichus_contig987 21198..21207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.8783503-CDS-F-distichus_contig987:21207..213001622931166.8783503-CDS-F-distichus_contig987:21207..21300Fucus distichus monoicousCDSF-distichus_contig987 21208..21300 -
1690886187.3780408-CDS-F-distichus_contig987:21207..213001690886187.3780408-CDS-F-distichus_contig987:21207..21300Fucus distichus monoicousCDSF-distichus_contig987 21208..21300 -
1622931166.8930924-CDS-F-distichus_contig987:21664..218121622931166.8930924-CDS-F-distichus_contig987:21664..21812Fucus distichus monoicousCDSF-distichus_contig987 21665..21812 -
1690886187.3876326-CDS-F-distichus_contig987:21664..218121690886187.3876326-CDS-F-distichus_contig987:21664..21812Fucus distichus monoicousCDSF-distichus_contig987 21665..21812 -
1622931166.9071352-CDS-F-distichus_contig987:22743..228441622931166.9071352-CDS-F-distichus_contig987:22743..22844Fucus distichus monoicousCDSF-distichus_contig987 22744..22844 -
1690886187.3976495-CDS-F-distichus_contig987:22743..228441690886187.3976495-CDS-F-distichus_contig987:22743..22844Fucus distichus monoicousCDSF-distichus_contig987 22744..22844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig987.19306.1

>prot_F-distichus_contig987.19306.1 ID=prot_F-distichus_contig987.19306.1|Name=mRNA_F-distichus_contig987.19306.1|organism=Fucus distichus monoicous|type=polypeptide|length=114bp
HVLCPRENCKLIGDDSPGAVSCPAKKMARPAGEGGSGKGKKKASAAKPRS
PATGKVKNKGPARKKRASGDQIKDQLDIIGAIKDRLKEVNMDFEEAYPNG
VNFTPNAKDLDFI*
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mRNA from alignment at F-distichus_contig987:20072..22844-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig987.19306.1 ID=mRNA_F-distichus_contig987.19306.1|Name=mRNA_F-distichus_contig987.19306.1|organism=Fucus distichus monoicous|type=mRNA|length=2773bp|location=Sequence derived from alignment at F-distichus_contig987:20072..22844- (Fucus distichus monoicous)
CATGTGCTGTGTCCTCGCGAGAACTGTAAACTTATAGGCGACGACTCTCC
CGGAGCAGTTAGCTGTCCGGCGAAAAAAATGGCGCGGCCTGCAGGAGAAG
GGTGAGTTCAAGACACATATTTCTGATAAGTGTTCATTATCCCTCATTTT
AAAATGTTAAAAATGAAGCAACAGTTCTCGTACTTGAGACCTGGGGTGCA
AACTGTACACTTGTTACGATGCTGTGCTCGGGCATTAGATCATGTATGCA
GCTTCACTTACAATCTTACATGTCATTATGCGCAACAGCAGCCAACGAGC
GTAATTGCCATGAAAGGCGGCGTTCAGTAGCAGTAGCTGTGCGCTGGCGT
TTGTTCTTGCTTACAAGTACATTCAACGAATTGGCTACAAACCCGATCAA
CTTCGTCGTACAGAGTACACGGATACACGGATAGTTCTTCCCTCCAAAAA
CTACCACCAGGTACAGTACAGCCGTGCAGCAGGAGCACCGAGGGGGGGGC
AGTCGCGGCACGGGGTGTAGTGGAGGGTGTCGCATACATGGCAGTGTATA
ACAGTCCCTAAGTGTAAACACTATGGGCGATATGAGACGATATGAGAGTT
GCGCCCGAAGCTGTATCAAGGCGGGAAGTCGTTACAAGATCTCCCACGAG
TAGGATCCAGTACGCTTCCTTTGTATTTCAGGGCCGCATTACTTAGGGTG
CTCTATCTTTAATACTGCAGCACGAACTGATTCTATAAAGCGGAAATCTC
AAGGCTGCAAATTTGCTTGATTTTGCCGCCTCTTGTTCTAAATAGTTTTC
CTTCTCGTACGTCATGTAGTATGTGTACTTTAGGTAATATATACCAGGTA
GTTTCATTGTATTTGGTCCAAATTAGTCTTGAATTGGCGCTCTCGTGTCA
CAGAGCCTCCGAATTGTGTTCCTAACGACGCTTTCGACCTTGCGGTTCTC
GACCGCGTGTAGTATTTAGAGATTTTAGTGCGCTAACTTCGTACCGCGCT
TGGATTATCCACTGGTGTTGCTGTGCATTCAGCGGATCGGGCAAAGGCAA
GAAAAAGGCTTCTGCAGCGAAGCCCCGGTCACCGGCCACAGGCAAGGTCA
AAAATAAGGGACCGGCGAGAAAGAAGAGGGCGTCCGGCGATCAGATCAAG
GACCAGCTCGACATCATCGGCGCAATCAAGGTAAAACAGTGTTAGGGGTC
AAAAAAAATCTTTAAACAGTGAGGTTTTCTCTTTGCAGCCTATGATCCTA
CCCACCAGGTAAACGTTTTGACGTTTTTCCCCTGACTGGGGGATATGTTC
AGAAGGTCTAGACGCGTTCAGATTTTCCTTTAAACATTGATGGGCTCATT
TGCGACGATGTACATACAGCACAGCTGTGTGCCTTGTCCAGGCCGTTGTT
AAACCCCACCACTCCCTTGGTTGGTTTCAGTCCTACCCAGGCGTCATCTT
TGTTCCACGCGTACATTTACTTGTTTCTGGGACTTGTCATGAAGTATATT
GGAGTTTCAAGATAACGAGAGAAACACTCTTTTCTAACCACCAGGACCGA
CTGAAAGAAGTGAACATGGACTTCGAGGAGGCTTACCCCAATGGAGTAAA
CTTCACACCTAACGCCAAGGACCTAGACTTCATCTGAATCCACGCGGGTG
AGCCCCCACGATGCTTTTTTTTCAGGTCTTGGTGTGTGTGGGTCATATGC
CAGCTCCAGCAAACCTTTAATATATTCCTACATACAGTGCGCCTTTCCTT
CGGTCCTAGGCTCTATAATACCCTTCATATACTGTTGCAGCCGAGAACGT
CCTTATGTTCACATGCTGTCCACGTAGGACATCGCCTGCCTGCCTGCCTG
TAAGGTTGCTCCCCTGGACATGACGCCATCGTGTGAAACCACATGAGAAT
AGTGTGATCTTGATAGCGTCATCCTAGCTCAATATTGGACGGGTGATGAT
CGGTACACGCCCAGGCGAGACTGATCGGCAAGGCAGCGCCGCCAAGGGAG
ACAACGAGGCTCTCGCTGGGGGCGAAGGAACCCATGACTTCTACCTCATT
AGTGACACGTTCTACCTTACTGAACGTGTCCCCCAGATTTCATTCGCGTG
TTGCGCAACTGAGAGAAGGGTCCTACACGACGGCGGGAAGCTCCGAGCCA
GTGTATGGCCCTAGCTCATAAAGTTTCCGTTTCTTGTGATGCAGAGCTTG
TGTCGTTTCGTGGTGTGCACGATTTGCTTTCGAATGCCTCTCTGGGAAAT
GCAAAACTCCAAGTAGCAGTATTACGTTTTCCAGAGAAAAAATGTTTTGC
GAAGGTATGAGTTTGATATATGTCAGTAAGTACTATTCTATTATTATTAA
TACAAATAGCAAAATAACCTGTACGAGTTGCTGTCGGTTCTCCTGCCCGG
TTGGTCGTGACATCGATTTTTGTTGCTGTGGGACGGTGTTGATTTATTTG
TCAACCGAAATGGCAATATATCCCAAGGAATCGCTCCTTACGACGATTGC
ATCGATAAGTTGCCCTTTCGATCGATTTCAGCCATCGATGGCAAATCCCG
TGGAGCAGTGTTAGTTCTGTGCAACAAGCTCTACTGTTGTACTATTCGCA
TCACTCCACCGAATGGTTCAAAACGATATCTTCGCCCCAAGAGCTTGAGT
GTCTAGTGCCTCCTCCTGACCGGTTAGGGCGCAAGACGCCCTTTTTGTTT
TTATAACTCCCTGTCCAGGTTTGTGATAACACGTAATGATTCGCTTTTGA
AGAATTATGACAACCAAGGTTTA
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Coding sequence (CDS) from alignment at F-distichus_contig987:20072..22844-

>mRNA_F-distichus_contig987.19306.1 ID=mRNA_F-distichus_contig987.19306.1|Name=mRNA_F-distichus_contig987.19306.1|organism=Fucus distichus monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at F-distichus_contig987:20072..22844- (Fucus distichus monoicous)
CATGTGCTGTGTCCTCGCGAGAACTGTAAACTTATAGGCGACGACTCTCC
CGGAGCAGTTAGCTGTCCGGCGAAAAAAATGGCGCGGCCTGCAGGAGAAG
GCATGTGCTGTGTCCTCGCGAGAACTGTAAACTTATAGGCGACGACTCTC
CCGGAGCAGTTAGCTGTCCGGCGAAAAAAATGGCGCGGCCTGCAGGAGAA
GGCGGATCGGGCAAAGGCAAGAAAAAGGCTTCTGCAGCGAAGCCCCGGTC
ACCGGCCACAGGCAAGGTCAAAAATAAGGGACCGGCGAGAAAGAAGAGGG
CGTCCGGCGATCAGATCAAGGACCAGCTCGACATCATCGGCGCAATCAAG
CGGATCGGGCAAAGGCAAGAAAAAGGCTTCTGCAGCGAAGCCCCGGTCAC
CGGCCACAGGCAAGGTCAAAAATAAGGGACCGGCGAGAAAGAAGAGGGCG
TCCGGCGATCAGATCAAGGACCAGCTCGACATCATCGGCGCAATCAAGGA
CCGACTGAAAGAAGTGAACATGGACTTCGAGGAGGCTTACCCCAATGGAG
TAAACTTCACACCTAACGCCAAGGACCTAGACTTCATCTGAGACCGACTG
AAAGAAGTGAACATGGACTTCGAGGAGGCTTACCCCAATGGAGTAAACTT
CACACCTAACGCCAAGGACCTAGACTTCATCTGA
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