mRNA_F-distichus_contig98666.19303.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98666.19303.1
Unique NamemRNA_F-distichus_contig98666.19303.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: D7G2C0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2C0_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 6.810e-50
Identity = 113/123 (91.87%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:    1 RCAMQESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            R   QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILP+VDKNVFVS   XXXXXXXXXXXXXXXXXXXXXXXXXXXX FFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDK++
Sbjct:  155 RFVNQESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPSVDKNVFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKIL 277
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A836CC21_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC21_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.330e-38
Identity = 98/119 (82.35%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:   13 QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            Q+SILTSSGDSTCI WDVEMGV   HFTDH GDVMSVSILP V          XXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGK+FGTGSDDSSCRLFDMRCYGE NYFGNDK++
Sbjct:  161 QDSILTSSGDSTCIFWDVEMGVAKQHFTDHMGDVMSVSILPHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKSFGTGSDDSSCRLFDMRCYGEVNYFGNDKIL 279
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A6V1KDD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KDD3_HETAK)

HSP 1 Score: 130 bits (328), Expect = 2.010e-34
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 1 
Query:   13 QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            + SI+TSSGDSTCIIWDV  G    HFTDH GDVMSV++    +KN+FVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXX   FPDG AFGTGSDDSSCR+FDMRCYGE N FGND+++
Sbjct:  158 EASIITSSGDSTCIIWDVNRGEAREHFTDHQGDVMSVAVSDQ-NKNIFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXVTMFPDGFAFGTGSDDSSCRMFDMRCYGEVNQFGNDRIL 275
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A4D9D1P3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1P3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.560e-34
Identity = 86/119 (72.27%), Postives = 101/119 (84.87%), Query Frame = 1 
Query:   13 QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            ++S+LTSSGDSTCI WDVE       F DHGGDVMS+S+LP++++++FVSG  XXXXXXXXXXXXXXXXXXXXXXXXXXXX FFPDG AF TGSDDS+CRLFD+R YG  N FGNDK++
Sbjct:   34 EQSLLTSSGDSTCIFWDVEKNEAITSFVDHGGDVMSLSVLPSINRHIFVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFFPDGNAFSTGSDDSTCRLFDIRSYGAVNVFGNDKIV 152
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A2R5G6F1_9STRA (Guanine nucleotide-binding protein subunit beta-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6F1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.950e-30
Identity = 58/118 (49.15%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:   16 ESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            ++ILTSSGDSTCI WD+E G   + FTDH GDVMSV++ P  D+N+FVSGSC                             FFP+G  FGTGSDDSSCR+FD+RCY E N F +D+++
Sbjct:  156 QNILTSSGDSTCIYWDIERGEPLSSFTDHNGDVMSVAVHPT-DRNLFVSGSCDATSKLFDIRQQGCVATFVGHESDINAVNFFPNGMCFGTGSDDSSCRMFDLRCYQEVNTFMSDRIL 272
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: W7U795_9STRA (G-protein beta subunit 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U795_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.870e-30
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 1 
Query:   13 QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            ++S+LTSSGDSTCI WDVE       F DHGGDVMS+S+LP++++++FVS   XXXXXXXXXXXXXXXXXXXXXXXXXXXX FFPDG AF TGSDDS+CRLFD+R YG  N FGNDK++
Sbjct:  896 EQSLLTSSGDSTCIFWDVEKNEAITSFADHGGDVMSLSVLPSINRHIFVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFFPDGNAFSTGSDDSTCRLFDIRSYGAVNVFGNDKIV 1014
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A7S2HG74_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HG74_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.990e-30
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:   22 ILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            ILTSSGDSTCI WD+  G     F+DH GDVMS+++ P+ D N+FVSG  XXXXXXXXXXXXXXXXXXXXXXXXX    +FPDGKAFGTGSDDS+CRLFDMRCYGE N FGND+++
Sbjct:  166 ILTSSGDSTCIHWDINSGEVLKTFSDHKGDVMSLAVNPS-DSNIFVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXNSVEWFPDGKAFGTGSDDSTCRLFDMRCYGEVNRFGNDRIL 280
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A7S3PWE8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWE8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.920e-29
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:   16 ESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKV 366
            +++LTSSGDS+CI WDVE G     F DH GDVMS+S+ P  ++N+FVSGS      XXXXXXXXXXXXXXXXXXXX    FFPDG AFGTGSDDS+CR+FDMRCYGE N FGN+ V
Sbjct:  161 KTLLTSSGDSSCIHWDVETGDVLQTFKDHRGDVMSLSLCPT-NQNIFVSGSVDTTGRXXXXXXXXXXXXXXXXXXXXNAVDFFPDGNAFGTGSDDSTCRIFDMRCYGEVNRFGNEDV 276
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A7S4K4C7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K4C7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.190e-28
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:   13 QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            +  ILT+SGDSTCI WD+E G     F+DH GDVMS+S  P  +KN+FVSG  XXXXXXXXXXXXXXXXXXXXXXXXXXX  FFPDG AFGTGSDDS+CRLFDMRCYGE N F ++K++
Sbjct:  163 ESQILTASGDSTCIHWDIESGEVLNTFSDHKGDVMSLSTCPT-NKNLFVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAFFPDGNAFGTGSDDSTCRLFDMRCYGEVNKFAHEKIL 280
[Close]
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Match: A0A3R6Z757_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R6Z757_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.070e-28
Identity = 87/119 (73.11%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:   13 QESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFVSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFFPDGKAFGTGSDDSSCRLFDMRCYGEANYFGNDKVI 369
            + +I+TSSGDSTCI+WDVE G     F DH GDVMSVSI P   +N+F+SG  XXXXXXXXXXXXXXXXXXXXXXXXXXXX FFPDG A GTGSDDSSCRLFD+R YGE N F NDK++
Sbjct:  169 EANIITSSGDSTCILWDVESGEVKTTFKDHTGDVMSVSINPH-HQNMFISGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFPDGNALGTGSDDSSCRLFDLRAYGELNNFSNDKIL 286
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98666.19303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C0_ECTSI6.810e-5091.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CC21_9STRA4.330e-3882.35WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6V1KDD3_HETAK2.010e-3476.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D1P3_9STRA7.560e-3472.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2R5G6F1_9STRA1.950e-3049.15Guanine nucleotide-binding protein subunit beta-1 ... [more]
W7U795_9STRA2.870e-3071.43G-protein beta subunit 1 n=1 Tax=Nannochloropsis g... [more]
A0A7S2HG74_9STRA2.990e-3072.41Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3PWE8_9STRA5.920e-2967.52Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4K4C7_9STRA1.190e-2871.43Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A3R6Z757_9STRA5.070e-2873.11Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98666contigF-distichus_contig98666:512..2008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.6e-40
Seed eggNOG ortholog2880.D7G2C0
Preferred nameGNB1
KEGG koko:K04536,ko:K04537,ko:K04538,ko:K07825
KEGG Pathwayko04011,ko04014,ko04062,ko04151,ko04371,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04744,ko04926,ko05032,ko05034,ko05167,ko05200,map04011,map04014,map04062,map04151,map04371,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04744,map04926,map05032,map05034,map05167,map05200
Hectar predicted targeting categoryother localisation
GOsGO:0000132,GO:0000187,GO:0000226,GO:0000278,GO:0000749,GO:0000750,GO:0001101,GO:0001403,GO:0001654,GO:0001666,GO:0001667,GO:0001750,GO:0001775,GO:0001917,GO:0001932,GO:0001934,GO:0002009,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0003007,GO:0003008,GO:0003013,GO:0003365,GO:0003371,GO:0003379,GO:0003380,GO:0003674,GO:0003824,GO:0003924,GO:0005246,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005834,GO:0005886,GO:0005929,GO:0005937,GO:0006109,GO:0006457,GO:0006873,GO:0006874,GO:0006875,GO:0006884,GO:0006915,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007166,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0007191,GO:0007200,GO:0007204,GO:0007212,GO:0007213,GO:0007223,GO:0007264,GO:0007265,GO:0007267,GO:0007275,GO:0007369,GO:0007398,GO:0007399,GO:0007405,GO:0007423,GO:0007498,GO:0007507,GO:0007584,GO:0007596,GO:0007599,GO:0007600,GO:0007602,GO:0007603,GO:0007606,GO:0008015,GO:0008081,GO:0008092,GO:0008104,GO:0008150,GO:0008217,GO:0008219,GO:0008283,GO:0008356,GO:0008361,GO:0009267,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009606,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009893,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010470,GO:0010525,GO:0010528,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010657,GO:0010658,GO:0010659,GO:0010675,GO:0010817,GO:0010906,GO:0012501,GO:0014070,GO:0016020,GO:0016043,GO:0016055,GO:0016056,GO:0016247,GO:0016462,GO:0016477,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0017145,GO:0019216,GO:0019218,GO:0019220,GO:0019222,GO:0019236,GO:0019725,GO:0019897,GO:0019898,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0022008,GO:0022402,GO:0022603,GO:0022607,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030168,GO:0030334,GO:0030335,GO:0030425,GO:0030447,GO:0030507,GO:0030587,GO:0030865,GO:0030866,GO:0030952,GO:0031090,GO:0031136,GO:0031137,GO:0031139,GO:0031152,GO:0031234,GO:0031253,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031682,GO:0031982,GO:0032005,GO:0032147,GO:0032268,GO:0032270,GO:0032350,GO:0032501,GO:0032502,GO:0032535,GO:0032870,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033273,GO:0033554,GO:0033674,GO:0033993,GO:0034694,GO:0034695,GO:0035556,GO:0035567,GO:0035690,GO:0036267,GO:0036293,GO:0036294,GO:0036445,GO:0036477,GO:0040001,GO:0040007,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0042060,GO:0042074,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042493,GO:0042578,GO:0042592,GO:0042594,GO:0042622,GO:0042995,GO:0043005,GO:0043010,GO:0043085,GO:0043087,GO:0043209,GO:0043226,GO:0043227,GO:0043326,GO:0043327,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043519,GO:0043547,GO:0043549,GO:0043577,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044093,GO:0044182,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044441,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0044764,GO:0044877,GO:0045165,GO:0045176,GO:0045595,GO:0045598,GO:0045859,GO:0045860,GO:0045937,GO:0045995,GO:0046578,GO:0046662,GO:0046999,GO:0047391,GO:0048103,GO:0048383,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0048880,GO:0048881,GO:0048882,GO:0048883,GO:0048915,GO:0048916,GO:0048920,GO:0048925,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050801,GO:0050817,GO:0050877,GO:0050878,GO:0050896,GO:0050909,GO:0051020,GO:0051056,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051259,GO:0051270,GO:0051272,GO:0051291,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051480,GO:0051493,GO:0051593,GO:0051606,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0055057,GO:0055059,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060026,GO:0060027,GO:0060041,GO:0060170,GO:0060255,GO:0060359,GO:0060429,GO:0061343,GO:0061351,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070206,GO:0070208,GO:0070482,GO:0070542,GO:0070783,GO:0070887,GO:0071214,GO:0071229,GO:0071242,GO:0071310,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071407,GO:0071417,GO:0071444,GO:0071453,GO:0071456,GO:0071478,GO:0071482,GO:0071495,GO:0071496,GO:0071840,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072359,GO:0072503,GO:0072507,GO:0080090,GO:0090066,GO:0090181,GO:0090207,GO:0090702,GO:0095500,GO:0097305,GO:0097306,GO:0097381,GO:0097447,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098722,GO:0098743,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0099106,GO:0099120,GO:0104004,GO:0120025,GO:0120038,GO:0198738,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902533,GO:1902610,GO:1902622,GO:1902624,GO:1902850,GO:1903047,GO:1903664,GO:1903665,GO:1903725,GO:1903831,GO:1905114,GO:1905144,GO:1905145,GO:1905360,GO:2000026,GO:2000145,GO:2000147,GO:2000241,GO:2000243
EggNOG free text desc.G-protein gamma-subunit binding
EggNOG OGsKOG0286@1,KOG0286@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04147
Exons4
Model size369
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98666.19303.1prot_F-distichus_contig98666.19303.1Fucus distichus monoicouspolypeptideF-distichus_contig98666 521..2008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.874464-UTR-F-distichus_contig98666:511..5201622931165.874464-UTR-F-distichus_contig98666:511..520Fucus distichus monoicousUTRF-distichus_contig98666 512..520 +
1690886186.8577132-UTR-F-distichus_contig98666:511..5201690886186.8577132-UTR-F-distichus_contig98666:511..520Fucus distichus monoicousUTRF-distichus_contig98666 512..520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.8921993-CDS-F-distichus_contig98666:520..5951622931165.8921993-CDS-F-distichus_contig98666:520..595Fucus distichus monoicousCDSF-distichus_contig98666 521..595 +
1690886186.876524-CDS-F-distichus_contig98666:520..5951690886186.876524-CDS-F-distichus_contig98666:520..595Fucus distichus monoicousCDSF-distichus_contig98666 521..595 +
1622931165.909633-CDS-F-distichus_contig98666:1027..11291622931165.909633-CDS-F-distichus_contig98666:1027..1129Fucus distichus monoicousCDSF-distichus_contig98666 1028..1129 +
1690886186.8907816-CDS-F-distichus_contig98666:1027..11291690886186.8907816-CDS-F-distichus_contig98666:1027..1129Fucus distichus monoicousCDSF-distichus_contig98666 1028..1129 +
1622931165.9301703-CDS-F-distichus_contig98666:1482..15721622931165.9301703-CDS-F-distichus_contig98666:1482..1572Fucus distichus monoicousCDSF-distichus_contig98666 1483..1572 +
1690886186.9056685-CDS-F-distichus_contig98666:1482..15721690886186.9056685-CDS-F-distichus_contig98666:1482..1572Fucus distichus monoicousCDSF-distichus_contig98666 1483..1572 +
1622931165.9530373-CDS-F-distichus_contig98666:1915..20081622931165.9530373-CDS-F-distichus_contig98666:1915..2008Fucus distichus monoicousCDSF-distichus_contig98666 1916..2008 +
1690886186.9152079-CDS-F-distichus_contig98666:1915..20081690886186.9152079-CDS-F-distichus_contig98666:1915..2008Fucus distichus monoicousCDSF-distichus_contig98666 1916..2008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98666.19303.1

>prot_F-distichus_contig98666.19303.1 ID=prot_F-distichus_contig98666.19303.1|Name=mRNA_F-distichus_contig98666.19303.1|organism=Fucus distichus monoicous|type=polypeptide|length=120bp
MQESILTSSGDSTCIIWDVEMGVTTAHFTDHGGDVMSVSILPAVDKNVFV
SGSCDSLAKVWDIREGKCVQTFQGHESDINSVMFFPDGKAFGTGSDDSSC
RLFDMRCYGEANYFGNDKVI
back to top

mRNA from alignment at F-distichus_contig98666:512..2008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98666.19303.1 ID=mRNA_F-distichus_contig98666.19303.1|Name=mRNA_F-distichus_contig98666.19303.1|organism=Fucus distichus monoicous|type=mRNA|length=1497bp|location=Sequence derived from alignment at F-distichus_contig98666:512..2008+ (Fucus distichus monoicous)
CGGTGCGCGATGCAGGAATCCATCCTGACCTCATCGGGAGACAGCACGTG
CATAATTTGGGACGTAGAAATGGGGGTGACCACGGTGCGCATGTATAATT
CGTTTCGACTTCGAATACGCGCAGGGTCTTGGTTGTTTGATCGATTCTCG
TCTTCGCATGGTGGCATCGCGGTTTTCTTAAAGCGGGTTTGGGGGGGGGG
AGGAGGGGACGGCTTATCTGCGAGTTTTCCTCACAGGGCAGCCCAAACAT
CAGCGAACAGAGGGAGGTTGTGCGCCTTAATGAGTGTGACAAGCGGACTG
GCGTGATGTACCGAGTGTAGTTGATATTTCTCGTGGAACCTTTGCCTCCG
GTTGGTTTCCGTATGGTGTATGGTGCGCGATTTGTTCCTTGGTTAAAAGC
TATTATGTTGCGGGGGGGGGTGCATTTGAGTTTATTTATCATATATTTAT
TTTGTTCTCTTTTTCTTTTTCATGTCGGCCCGGCGAACCAACGAAATAAC
GCCTTCCTGATCACAGGCGCACTTCACAGATCACGGTGGTGACGTGATGT
CCGTGTCGATTCTCCCGGCGGTAGACAAGAACGTCTTCGTGTCCGGCTCG
TGCGATTCGCTCGCTAAGGTAATGTAACGGCGCGAACCTCGCCCCGACCC
GACAGCATCGTAGCAAAGCGATTGTATAGGACGTGCGATGGTGGTGTTGC
GAGAGTATCTCACGGAGTTTTTTTTTGGGGGGGTAGGGGGGGGCAAGGGA
GCGTCTCGTGCTCTCGGGAGCACAAGGTGTCCGTCGTCGACCGCGATGAC
CCTCTCTCTAAAAATAACGAATACAGTTGTAAGCTGTTACTGAGCTGTAT
GGCTGCGTCAGTGCATCATCTTCTTGTTTAAGAGGTGGGAAAATCGACTA
ATAGTATAGCCGCAAATACCTCCCACTCTGCGCTGCCTGTTGTCGCGTGA
TGTTGCGCTATGCGCGGCAAGGTGTGGGATATTCGTGAAGGGAAATGCGT
ACAAACCTTCCAGGGGCACGAGTCGGATATCAACTCCGTAATGTTCTTCC
CCGACGGAAAGGTGCGATCGGCCTTCACAATTTTGTCAAGCGGAGCCTCA
GCTGGAAGAAGTAGTGTAGTACCTGTGTGTGGGCGTGTTGGGGGGGGGGG
GGATTCGGATGATAATATAGTTTTATTCTACAACACCCGTAATGCCGCAG
CTTCGCAATAGACCGCGTGGGGAGGTATACCATCTTAAGTAACTGCGCAG
CATGCTTGTAGTAGCATCAAACGTGAACGGTATAGCCCCGCACATTTACG
TTCTCTTGGGTATTGAGCGTGAATCATCCCCTATTTTGATATTTTTCGTT
TTTTAATCTTATAGGCGTCTGGCTTGTTGGCTATTGGCTTTCGTAAAACA
ACAGGCGTTCGGGACAGGGTCGGACGACTCCAGCTGCCGGTTGTTCGACA
TGCGATGCTACGGCGAGGCCAACTACTTCGGGAACGATAAGGTTATT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig98666:512..2008+

>mRNA_F-distichus_contig98666.19303.1 ID=mRNA_F-distichus_contig98666.19303.1|Name=mRNA_F-distichus_contig98666.19303.1|organism=Fucus distichus monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at F-distichus_contig98666:512..2008+ (Fucus distichus monoicous)
ATGCAGGAATCCATCCTGACCTCATCGGGAGACAGCACGTGCATAATTTG
GGACGTAGAAATGGGGGTGACCACGATGCAGGAATCCATCCTGACCTCAT
CGGGAGACAGCACGTGCATAATTTGGGACGTAGAAATGGGGGTGACCACG
GCGCACTTCACAGATCACGGTGGTGACGTGATGTCCGTGTCGATTCTCCC
GGCGGTAGACAAGAACGTCTTCGTGTCCGGCTCGTGCGATTCGCTCGCTA
AGGCGCACTTCACAGATCACGGTGGTGACGTGATGTCCGTGTCGATTCTC
CCGGCGGTAGACAAGAACGTCTTCGTGTCCGGCTCGTGCGATTCGCTCGC
TAAGGTGTGGGATATTCGTGAAGGGAAATGCGTACAAACCTTCCAGGGGC
ACGAGTCGGATATCAACTCCGTAATGTTCTTCCCCGACGGAAAGGTGTGG
GATATTCGTGAAGGGAAATGCGTACAAACCTTCCAGGGGCACGAGTCGGA
TATCAACTCCGTAATGTTCTTCCCCGACGGAAAGGCGTTCGGGACAGGGT
CGGACGACTCCAGCTGCCGGTTGTTCGACATGCGATGCTACGGCGAGGCC
AACTACTTCGGGAACGATAAGGTTATTGCGTTCGGGACAGGGTCGGACGA
CTCCAGCTGCCGGTTGTTCGACATGCGATGCTACGGCGAGGCCAACTACT
TCGGGAACGATAAGGTTATT
back to top