mRNA_F-distichus_contig98566.19295.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98566.19295.1
Unique NamemRNA_F-distichus_contig98566.19295.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.470e-24
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   16 KVQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPSTL 171
            KV ANCGGE FTATGLMVTERNWL++YEP+ERWTGR IPEFFQGQEFVPS L
Sbjct:  239 KVLANCGGEDFTATGLMVTERNWLDVYEPFERWTGRNIPEFFQGQEFVPSVL 290
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.520e-13
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   37 GEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPSTL 171
            GE F+A+GLM+TERNWL IY P+ERW+ + IP F  GQEFVP++L
Sbjct:  262 GEEFSASGLMITERNWLEIYHPWERWSDKAIPTFTVGQEFVPTSL 306
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A4Y7T343_9AGAR (DNA topoisomerase n=2 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7T343_9AGAR)

HSP 1 Score: 71.6 bits (174), Expect = 3.450e-13
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   19 VQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPSTL 171
            V+  CGGE+F+ +GL+VTERN+L +Y PY++W  RT+P F QG+EF PS+L
Sbjct:  426 VEVECGGELFSTSGLIVTERNYLEVY-PYDKWASRTLPAFEQGEEFDPSSL 475
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: UPI000444A043 (prokaryotic type I DNA topoisomerase n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A043)

HSP 1 Score: 68.9 bits (167), Expect = 3.050e-12
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 LSIPLKVQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPS 165
            L     V   CGGE F ATGL++ ERN+LN+Y PYE+W+G+ +P+F +G EF+PS
Sbjct:  422 LGFQTTVDVLCGGEEFYATGLIILERNFLNVY-PYEKWSGKELPDFEEGDEFMPS 475
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A067Q4C2_9AGAM (DNA topoisomerase n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q4C2_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 3.070e-12
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 LSIPLKVQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPS 165
            L +   V A CGGE F+ATGL+V ERN+L +Y PY++W+ + +PEF +GQEF+P+
Sbjct:  421 LGLQRTVDAECGGEEFSATGLVVLERNYLLVY-PYDKWSDKELPEFTEGQEFMPT 474
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A8H6YEU9_9AGAR (DNA topoisomerase n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6YEU9_9AGAR)

HSP 1 Score: 68.2 bits (165), Expect = 5.720e-12
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   19 VQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPS 165
            V   CGGE F ATGL+V +RN+L++Y PY++WTG  +P+F +G+EF PS
Sbjct:  425 VDVTCGGEAFYATGLVVHQRNYLDVY-PYDKWTGNRVPDFVEGEEFQPS 472
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: J9J1U5_9SPIT (DNA topoisomerase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J1U5_9SPIT)

HSP 1 Score: 67.8 bits (164), Expect = 7.830e-12
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   16 KVQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPSTL 171
            K++   GGE F   GL++ E NWL IY+PYE+W   T+P F +G +F PS +
Sbjct:  545 KIEVEIGGETFKTRGLVIVESNWLEIYQPYEKWADNTLPNFQEGDQFTPSLI 596
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A8H5BSQ3_9AGAR (DNA topoisomerase n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BSQ3_9AGAR)

HSP 1 Score: 67.8 bits (164), Expect = 7.830e-12
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   19 VQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPS 165
            V+  CGGE F+ATGL+V ERN+L +Y  Y++WTG T+P+F +GQEF P+
Sbjct:  420 VEVVCGGEEFSATGLVVKERNYLVVYV-YDKWTGHTVPDFVEGQEFAPT 467
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A5C3MFW6_9AGAR (DNA topoisomerase n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3MFW6_9AGAR)

HSP 1 Score: 66.6 bits (161), Expect = 1.990e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   31 CGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPS 165
            CGGE F ATGL+V E+N+L +Y PY++WTG  IPEF +G+EF PS
Sbjct:  430 CGGEDFYATGLVVLEKNYLEVY-PYDKWTGHVIPEFAEGEEFDPS 473
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BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Match: A0A0C9XCQ7_9AGAR (DNA topoisomerase n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9XCQ7_9AGAR)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-11
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   19 VQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQEFVPS 165
            V+  CGGE FTATGL+V +RN+L +Y PY++W G T+P F +G+EF PS
Sbjct:  420 VEVVCGGEEFTATGLIVLQRNYLLVY-PYDKWIGHTVPNFQEGEEFDPS 467
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98566.19295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI1.470e-2486.54DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YM61_9STRA2.520e-1364.44DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A4Y7T343_9AGAR3.450e-1356.86DNA topoisomerase n=2 Tax=Coprinellus micaceus Tax... [more]
UPI000444A0433.050e-1252.73prokaryotic type I DNA topoisomerase n=1 Tax=Stere... [more]
A0A067Q4C2_9AGAM3.070e-1252.73DNA topoisomerase n=1 Tax=Jaapia argillacea MUCL 3... [more]
A0A8H6YEU9_9AGAR5.720e-1255.10DNA topoisomerase n=1 Tax=Mycena venus TaxID=27336... [more]
J9J1U5_9SPIT7.830e-1246.15DNA topoisomerase n=1 Tax=Oxytricha trifallax TaxI... [more]
A0A8H5BSQ3_9AGAR7.830e-1257.14DNA topoisomerase n=1 Tax=Psilocybe cf. subviscida... [more]
A0A5C3MFW6_9AGAR1.990e-1162.22DNA topoisomerase n=1 Tax=Crucibulum laeve TaxID=6... [more]
A0A0C9XCQ7_9AGAR2.000e-1157.14DNA topoisomerase n=1 Tax=Laccaria amethystina LaA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98566contigF-distichus_contig98566:1402..1572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue6.9e-20
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.257805-CDS-F-distichus_contig98566:1401..15721622931165.257805-CDS-F-distichus_contig98566:1401..1572Fucus distichus monoicousCDSF-distichus_contig98566 1402..1572 -
1690886186.673222-CDS-F-distichus_contig98566:1401..15721690886186.673222-CDS-F-distichus_contig98566:1401..1572Fucus distichus monoicousCDSF-distichus_contig98566 1402..1572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98566.19295.1prot_F-distichus_contig98566.19295.1Fucus distichus monoicouspolypeptideF-distichus_contig98566 1402..1572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98566.19295.1

>prot_F-distichus_contig98566.19295.1 ID=prot_F-distichus_contig98566.19295.1|Name=mRNA_F-distichus_contig98566.19295.1|organism=Fucus distichus monoicous|type=polypeptide|length=57bp
LSIPLKVQANCGGEVFTATGLMVTERNWLNIYEPYERWTGRTIPEFFQGQ
EFVPSTL
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mRNA from alignment at F-distichus_contig98566:1402..1572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98566.19295.1 ID=mRNA_F-distichus_contig98566.19295.1|Name=mRNA_F-distichus_contig98566.19295.1|organism=Fucus distichus monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at F-distichus_contig98566:1402..1572- (Fucus distichus monoicous)
TTATCTATTCCGTTGAAGGTGCAAGCGAATTGCGGAGGGGAAGTCTTCAC
GGCAACGGGACTCATGGTGACGGAGCGCAACTGGTTGAACATTTACGAGC
CCTACGAGCGCTGGACTGGACGAACGATCCCGGAATTTTTCCAGGGCCAG
GAGTTCGTCCCGAGCACCCTA
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Coding sequence (CDS) from alignment at F-distichus_contig98566:1402..1572-

>mRNA_F-distichus_contig98566.19295.1 ID=mRNA_F-distichus_contig98566.19295.1|Name=mRNA_F-distichus_contig98566.19295.1|organism=Fucus distichus monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at F-distichus_contig98566:1402..1572- (Fucus distichus monoicous)
TTATCTATTCCGTTGAAGGTGCAAGCGAATTGCGGAGGGGAAGTCTTCAC
GGCAACGGGACTCATGGTGACGGAGCGCAACTGGTTGAACATTTACGAGC
CCTACGAGCGCTGGACTGGACGAACGATCCCGGAATTTTTCCAGGGCCAG
GAGTTCGTCCCGAGCACCCTATTATCTATTCCGTTGAAGGTGCAAGCGAA
TTGCGGAGGGGAAGTCTTCACGGCAACGGGACTCATGGTGACGGAGCGCA
ACTGGTTGAACATTTACGAGCCCTACGAGCGCTGGACTGGACGAACGATC
CCGGAATTTTTCCAGGGCCAGGAGTTCGTCCCGAGCACCCTA
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