mRNA_F-distichus_contig98566.19294.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98566.19294.1
Unique NamemRNA_F-distichus_contig98566.19294.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.560e-18
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    4 MDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK 132
            MDEG TQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK
Sbjct:  292 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK 334
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: L1K3I3_GUITC (DNA topoisomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3I3_GUITC)

HSP 1 Score: 69.7 bits (169), Expect = 9.230e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 MDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQR 129
            M EG TQAPPLLSE+DLI LMD  GIGTDATIAEHI K+QQR
Sbjct:  478 MTEGRTQAPPLLSEADLISLMDSHGIGTDATIAEHITKVQQR 519
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: A0A7S0D577_9EUKA (DNA topoisomerase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D577_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 6.010e-12
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 MDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK 132
            ++EG T+ PPLLSE+DLI LM+Q GIGTDATIAEHI K++QRK
Sbjct:  208 LEEGKTEPPPLLSEADLISLMNQNGIGTDATIAEHIDKVKQRK 250
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: A0A7S0G008_9DINO (DNA topoisomerase (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0G008_9DINO)

HSP 1 Score: 65.9 bits (159), Expect = 7.190e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 KMDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK 132
            +M E +TQ PPLLSE+DLIG MD+ GIGTDAT+ EHIQKIQ RK
Sbjct:  167 EMIESVTQPPPLLSEADLIGAMDRNGIGTDATMHEHIQKIQTRK 210
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: A0A1J4JYL2_9EUKA (DNA topoisomerase n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JYL2_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 KMDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQR 129
            KM EG+T APPLL+E +LI LMD++GIGTDATIAEHI+KI QR
Sbjct:  484 KMKEGMTTAPPLLTEPELIRLMDKEGIGTDATIAEHIEKILQR 526
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: R0M9K0_NOSB1 (DNA topoisomerase n=4 Tax=Opisthokonta TaxID=33154 RepID=R0M9K0_NOSB1)

HSP 1 Score: 65.1 bits (157), Expect = 3.910e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 KMDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQR 129
            +MDE  T+ PP L+ESDLI LMD+ GIGTDATI EHIQKIQ+R
Sbjct:  458 EMDEHKTEPPPFLTESDLIALMDKNGIGTDATIHEHIQKIQER 500
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: A0A7S2B941_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B941_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.850e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 KMDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQR 129
            KM EG T  PPLL E+DLI LM++ GIGTDATIAEHI K+Q R
Sbjct:   34 KMTEGRTAPPPLLHETDLIKLMERHGIGTDATIAEHIAKVQAR 76
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: Q8SS31_ENCCU (DNA topoisomerase n=3 Tax=Encephalitozoon cuniculi TaxID=6035 RepID=Q8SS31_ENCCU)

HSP 1 Score: 64.7 bits (156), Expect = 5.350e-11
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 KMDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQR 129
            ++DEG T AP  LSE++LIGLMD+ GIGTDATI EHIQKIQ+R
Sbjct:  459 EIDEGETSAPKYLSEAELIGLMDKNGIGTDATIHEHIQKIQER 501
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: A0A6B2L0I0_9EUKA (DNA topoisomerase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L0I0_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 7.320e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 MDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK 132
            M+EG T APPLL+E DL+ LMD+  IGTDATIAEHI KIQ+RK
Sbjct:   38 MEEGSTTAPPLLTEPDLVTLMDKNKIGTDATIAEHIHKIQERK 80
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BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Match: A0A7J7IDZ7_9RHOD (DNA topoisomerase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDZ7_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 9.990e-11
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 KMDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQR 129
            ++ E  T+APPLLSE+DLI  MD+ GIGTDATIAEHI+KIQ+R
Sbjct:  565 RLIESATEAPPLLSEADLIAAMDRHGIGTDATIAEHIKKIQER 607
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98566.19294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI6.560e-1897.67DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
L1K3I3_GUITC9.230e-1380.95DNA topoisomerase n=1 Tax=Guillardia theta (strain... [more]
A0A7S0D577_9EUKA6.010e-1272.09DNA topoisomerase (Fragment) n=1 Tax=Amorphochlora... [more]
A0A7S0G008_9DINO7.190e-1272.73DNA topoisomerase (Fragment) n=1 Tax=Pyrodinium ba... [more]
A0A1J4JYL2_9EUKA1.120e-1174.42DNA topoisomerase n=1 Tax=Tritrichomonas foetus Ta... [more]
R0M9K0_NOSB13.910e-1172.09DNA topoisomerase n=4 Tax=Opisthokonta TaxID=33154... [more]
A0A7S2B941_9STRA4.850e-1169.77DNA topoisomerase (Fragment) n=1 Tax=Dictyocha spe... [more]
Q8SS31_ENCCU5.350e-1172.09DNA topoisomerase n=3 Tax=Encephalitozoon cuniculi... [more]
A0A6B2L0I0_9EUKA7.320e-1172.09DNA topoisomerase n=1 Tax=Arcella intermedia TaxID... [more]
A0A7J7IDZ7_9RHOD9.990e-1169.77DNA topoisomerase n=1 Tax=Cyanidiococcus yangmings... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98566contigF-distichus_contig98566:130..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size132
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.1817596-CDS-F-distichus_contig98566:129..2581622931165.1817596-CDS-F-distichus_contig98566:129..258Fucus distichus monoicousCDSF-distichus_contig98566 130..258 -
1690886186.633062-CDS-F-distichus_contig98566:129..2581690886186.633062-CDS-F-distichus_contig98566:129..258Fucus distichus monoicousCDSF-distichus_contig98566 130..258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.2010233-UTR-F-distichus_contig98566:258..2611622931165.2010233-UTR-F-distichus_contig98566:258..261Fucus distichus monoicousUTRF-distichus_contig98566 259..261 -
1690886186.6599746-UTR-F-distichus_contig98566:258..2611690886186.6599746-UTR-F-distichus_contig98566:258..261Fucus distichus monoicousUTRF-distichus_contig98566 259..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98566.19294.1prot_F-distichus_contig98566.19294.1Fucus distichus monoicouspolypeptideF-distichus_contig98566 130..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98566.19294.1

>prot_F-distichus_contig98566.19294.1 ID=prot_F-distichus_contig98566.19294.1|Name=mRNA_F-distichus_contig98566.19294.1|organism=Fucus distichus monoicous|type=polypeptide|length=43bp
MDEGLTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRK
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mRNA from alignment at F-distichus_contig98566:130..261-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98566.19294.1 ID=mRNA_F-distichus_contig98566.19294.1|Name=mRNA_F-distichus_contig98566.19294.1|organism=Fucus distichus monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at F-distichus_contig98566:130..261- (Fucus distichus monoicous)
AAGATGGACGAAGGTCTAACCCAGGCCCCTCCCCTCCTGAGCGAGTCGGA
CCTCATCGGCCTCATGGACCAGAAAGGGATCGGGACGGACGCCACGATCG
CCGAGCACATCCAGAAGATACAGCAGCGCAAG
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Coding sequence (CDS) from alignment at F-distichus_contig98566:130..261-

>mRNA_F-distichus_contig98566.19294.1 ID=mRNA_F-distichus_contig98566.19294.1|Name=mRNA_F-distichus_contig98566.19294.1|organism=Fucus distichus monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at F-distichus_contig98566:130..261- (Fucus distichus monoicous)
ATGGACGAAGGTCTAACCCAGGCCCCTCCCCTCCTGAGCGAGTCGGACCT
CATCGGCCTCATGGACCAGAAAGGGATCGGGACGGACGCCACGATCGCCG
AGCACATCCAGAAGATACAGCAGCGCAAGATGGACGAAGGTCTAACCCAG
GCCCCTCCCCTCCTGAGCGAGTCGGACCTCATCGGCCTCATGGACCAGAA
AGGGATCGGGACGGACGCCACGATCGCCGAGCACATCCAGAAGATACAGC
AGCGCAAG
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