mRNA_F-distichus_contig9855.19291.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9855.19291.1
Unique NamemRNA_F-distichus_contig9855.19291.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9855.19291.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 3.700e-75
Identity = 135/250 (54.00%), Postives = 171/250 (68.40%), Query Frame = 3 
Query:  105 ITFGLFCVATSFVVNPSLHTKRLQHDSLAPFMIPPARTRTSSTTRVMMAGFGAKPKETPPVTGAGRGQRAYERQVRSYKGLRAAGAEGIDVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDLVLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKGQDKATVSTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPAPPAEVKIETMDTLKAAGAV-ADEGLPTTAE*P 851
            I  GL C   SF   P     +L+  S A  MIP  R R+++++RVMM G    P++   V G GRGQ AY+RQV+SY GL  AGAEG DVYVHR G DDKFIF GK AWSS ++ +QA+Q+QR L+L HV++LEP+W  KP+P MRIFTAP+N+E+ VA+N+ DL R L G GKG+D   V  D +T  +VG  PE+YE G+ Y+YVRKL+DG+CPAPP+EV IETMD L A G V A E +   A  P
Sbjct:   11 IALGLLCDVDSFA--PLTAGWQLRQTSSAWHMIPSGRPRSATSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREG-DDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAP-MRIFTAPINSEIEVARNIHDLVRVL-GPGKGKD---VKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAKETVDAAAPPP 252
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BLAST of mRNA_F-distichus_contig9855.19291.1 vs. uniprot
Match: A0A448ZK73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK73_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.040e-6
Identity = 51/179 (28.49%), Postives = 84/179 (46.93%), Query Frame = 3 
Query:  306 QRAYERQVRSYKGLRAAGAEGI--DVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDLVLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKGQDKATVSTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPA-----------PPAEVKIETMDTLKA 803
            +R  +R   ++  LR  G + +  DVY       ++  + GKVA  ++VS E  I  Q +++  H   L P+        + I+TAP +TE++VA N  +L  A        +K  V    + +  +GF  E+Y++G++ +   + EDG  PA           PP E   E M+ LKA
Sbjct:   91 ERNVKRCHENFLNLRKVGGKDLCHDVYAKSPLKKEEVWYVGKVAKITDVSLEDCIARQWNIIETHAANLRPIELYPQRGNLEIWTAPGDTELDVAYNRPELVMAR------MEKYEVLAKDLRNNLIGFQGEVYQEGEEGFRTWRKEDG-SPARPEINPGGETRPPTE---EEMEQLKA 259
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BLAST of mRNA_F-distichus_contig9855.19291.1 vs. uniprot
Match: A0A7S4ENJ4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ENJ4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-5
Identity = 44/155 (28.39%), Postives = 76/155 (49.03%), Query Frame = 3 
Query:  306 QRAYERQVRSYKGLRAAGAEGI--DVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDLVLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKGQDKATVSTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPAPP 764
            +R  +R  +++  LR  G + +  DVY       ++  + GKVA  SEVS E  I  Q +++  H   L P+        + ++TAP +TE+ VA N  +L           +K  V +  + +  +GF  E+Y++G++ +   + EDG  PA P
Sbjct:  110 ERNVKRCHQNFLSLRNVGGKDLCNDVYAKSPVQKEEVWYVGKVAKVSEVSLEDCIARQWNVIETHAANLRPIELYGHRGNLELWTAPGDTELEVAYNRPELVMVK------MEKYAVDSKDLRNNLIGFQGEVYQEGEEGFRSWRNEDG-SPARP 257
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9855.19291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYW2_ECTSI3.700e-7554.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A448ZK73_9STRA9.040e-628.49Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4ENJ4_9STRA3.330e-528.39Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9855contigF-distichus_contig9855:5455..7698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue8.4e-07
Seed eggNOG ortholog2850.Phatr45146
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EIZK@1,2SP9S@2759,2XGCX@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1381
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9855.19291.1prot_F-distichus_contig9855.19291.1Fucus distichus monoicouspolypeptideF-distichus_contig9855 5988..7666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.963976-UTR-F-distichus_contig9855:5454..59871622931164.963976-UTR-F-distichus_contig9855:5454..5987Fucus distichus monoicousUTRF-distichus_contig9855 5455..5987 -
1690886186.52576-UTR-F-distichus_contig9855:5454..59871690886186.52576-UTR-F-distichus_contig9855:5454..5987Fucus distichus monoicousUTRF-distichus_contig9855 5455..5987 -
1622931165.0141988-UTR-F-distichus_contig9855:7666..76981622931165.0141988-UTR-F-distichus_contig9855:7666..7698Fucus distichus monoicousUTRF-distichus_contig9855 7667..7698 -
1690886186.5686076-UTR-F-distichus_contig9855:7666..76981690886186.5686076-UTR-F-distichus_contig9855:7666..7698Fucus distichus monoicousUTRF-distichus_contig9855 7667..7698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.978811-CDS-F-distichus_contig9855:5987..63681622931164.978811-CDS-F-distichus_contig9855:5987..6368Fucus distichus monoicousCDSF-distichus_contig9855 5988..6368 -
1690886186.5385625-CDS-F-distichus_contig9855:5987..63681690886186.5385625-CDS-F-distichus_contig9855:5987..6368Fucus distichus monoicousCDSF-distichus_contig9855 5988..6368 -
1622931164.9989069-CDS-F-distichus_contig9855:7231..76661622931164.9989069-CDS-F-distichus_contig9855:7231..7666Fucus distichus monoicousCDSF-distichus_contig9855 7232..7666 -
1690886186.5506947-CDS-F-distichus_contig9855:7231..76661690886186.5506947-CDS-F-distichus_contig9855:7231..7666Fucus distichus monoicousCDSF-distichus_contig9855 7232..7666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9855.19291.1

>prot_F-distichus_contig9855.19291.1 ID=prot_F-distichus_contig9855.19291.1|Name=mRNA_F-distichus_contig9855.19291.1|organism=Fucus distichus monoicous|type=polypeptide|length=272bp
MSNLIQKSATSTAAMTNSVLLGPLITFGLFCVATSFVVNPSLHTKRLQHD
SLAPFMIPPARTRTSSTTRVMMAGFGAKPKETPPVTGAGRGQRAYERQVR
SYKGLRAAGAEGIDVYVHRVGGDDKFIFAGKVAWSSEVSAEQAIQWQRDL
VLDHVKVLEPLWNTKPSPQMRIFTAPLNTEVNVAKNVLDLTRALAGKGKG
QDKATVSTDGMTSAQVGFSPEMYEKGQDYYYVRKLEDGRCPAPPAEVKIE
TMDTLKAAGAVADEGLPTTAE*
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mRNA from alignment at F-distichus_contig9855:5455..7698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9855.19291.1 ID=mRNA_F-distichus_contig9855.19291.1|Name=mRNA_F-distichus_contig9855.19291.1|organism=Fucus distichus monoicous|type=mRNA|length=2244bp|location=Sequence derived from alignment at F-distichus_contig9855:5455..7698- (Fucus distichus monoicous)
GCCATATACTTTTCTGTCGCTAGGAGAAAGGCATGAGTAATTTGATTCAG
AAAAGCGCCACATCGACAGCTGCCATGACGAATTCGGTATTGCTTGGGCC
GCTGATAACGTTTGGGCTATTTTGTGTGGCGACAAGTTTTGTGGTGAACC
CTTCCTTGCACACCAAGCGCCTGCAGCATGACAGTCTCGCGCCGTTCATG
ATCCCTCCAGCCCGTACTCGTACCAGTAGCACAACTCGGGTCATGATGGC
AGGATTCGGGGCAAAACCGAAGGAAACGCCGCCGGTAACAGGAGCGGGGA
GAGGACAGCGGGCCTACGAGCGCCAAGTTCGCTCCTACAAAGGGTTGCGG
GCGGCGGGGGCCGAGGGAATCGACGTGTACGTACATCGGGTTGGCGGCGA
CGACAAATTCATTTTCGCCGGGAAGGTCGCTTGGAGCTCGGAGGTCAGCG
CCGAGCAAGCAATACAGGTGTGTTCCGAGAGGTTAGATCGCGGGGTAGGA
TCTGGCAGACGGGTATACACTCGGTGAAACCTTGTCCACCCGCGTCGGGT
CTAGGGAGCCTGGCCTAAAGAACCACTGCTGCATACTTATAGCGCAACAC
GAATTCCACATTTCCACAGCAGTACCTTGTATTATGTTATTATAGTATGA
TTAGTACAGGTACAAAATAAATGGGGAGATTTTGTGGGATTCAGGGAACG
GTGAAGGACCGATAAAGGGCGTCCAAGCTAGTGGACTACTTGACCTCCAT
CTCCAAGGTATCCGTCTTTTGCGGCCGACCACAATCATGGACGCATGCGA
CGTTGAAATATGAGAACGCCATACTACACGTGTAACCTGCCAGATGTGTC
GCGCTCACGTCCCGGGTGGATTTAAGATTCGAGTACAGAGCTCAAAGATG
TAGATTTTCTAAAATATATTTCCTTTCTAGCAGCTAGATTCACCTGATAA
TTATCAGAAAGCAAAACCTTGTCTCCTGCCTTGTCAATCTGTAATTTACT
TGATGGTGGCTAATAATATTAATATATAGTAATAGTGGGCCAAGGACAAC
GATACATGAACGTTCAGGTACTGACTGGACCTCCCTTCTCCGACACGATA
CCTTTGAATCTAACAAAGTTTCCCCGCCAAACTCAAGGAGGCACCCGATT
CGCTGAGCTGCTGTACCCGCGACTACTCCTCTCGCGTTCGGTTATTGACG
GGAATGACGGGAATCGTGTTTCTTGTGGATTTTCAAAATATTTCGTAGTA
CACTGGTCGTCGGTAATGAACCAAATCGCCCGCGATGCCCCCCGGCCGAC
TACGACGTGCTCTCCGTCAAAACGCAACAGTGGCAAAGGGACCTTGTTCT
GGATCACGTGAAGGTACTCGAGCCCCTGTGGAACACCAAGCCATCGCCCC
AGATGCGCATATTCACCGCGCCGCTCAATACCGAGGTCAACGTTGCCAAG
AACGTTCTCGACCTCACGCGCGCGTTGGCAGGCAAGGGCAAGGGCCAGGA
CAAAGCCACCGTTAGCACGGACGGAATGACGTCCGCGCAGGTGGGTTTCT
CCCCTGAGATGTATGAGAAGGGTCAGGACTACTATTACGTGAGGAAGCTG
GAGGACGGTCGATGTCCCGCGCCACCTGCGGAGGTGAAGATTGAAACCAT
GGACACGCTGAAGGCAGCGGGAGCCGTGGCCGATGAGGGGTTGCCTACTA
CGGCAGAGTGACCCATCTTGAGCGATTAAGTCTATTTCCGAATGTACGGT
AGTTAATTTGCGTTCATATGGAGCTGCGGTGCACCTCAACCATGTGGTTT
TGGGGGATGTGGTATTGTGGCCTTGAGCGCGGGATGGTTGGCGCACAGGG
CTCACGGCTCTGGTGCATTGAGAAAGTCTTATGAAATGAGTGCAAAACAT
AAGCAATGTCTAAAAGTGTACCTGGTATGATGTTATCCAGATCGGTATGG
CAGTAGAGGCTGGCGCTGGTCGCGATGAAGCTAACCCAGCAGGCACGCGA
GTGCACAAGATAAAGAAAGAAGCTGATGTTGAAAATGGCGCTTACGGCCA
AGAAAAGCTTGAGAACAATCACCCAATGCAGAAGTTCAGGGAGCTAGTGA
GGTGCTCGTCAGAAGCTACCTCTCGTGAAAAGCTAGCCGTCGTGGGGAAT
GAGTACGTGTGCGAGCCCTACCACCAAACAAAAACAAAACAGGAGTACAA
GTCGCTTGACCCTAAGAAACCGTTGCAAATAAGTTTCCTAGAAT
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Coding sequence (CDS) from alignment at F-distichus_contig9855:5455..7698-

>mRNA_F-distichus_contig9855.19291.1 ID=mRNA_F-distichus_contig9855.19291.1|Name=mRNA_F-distichus_contig9855.19291.1|organism=Fucus distichus monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at F-distichus_contig9855:5455..7698- (Fucus distichus monoicous)
ATGAGTAATTTGATTCAGAAAAGCGCCACATCGACAGCTGCCATGACGAA
TTCGGTATTGCTTGGGCCGCTGATAACGTTTGGGCTATTTTGTGTGGCGA
CAAGTTTTGTGGTGAACCCTTCCTTGCACACCAAGCGCCTGCAGCATGAC
AGTCTCGCGCCGTTCATGATCCCTCCAGCCCGTACTCGTACCAGTAGCAC
AACTCGGGTCATGATGGCAGGATTCGGGGCAAAACCGAAGGAAACGCCGC
CGGTAACAGGAGCGGGGAGAGGACAGCGGGCCTACGAGCGCCAAGTTCGC
TCCTACAAAGGGTTGCGGGCGGCGGGGGCCGAGGGAATCGACGTGTACGT
ACATCGGGTTGGCGGCGACGACAAATTCATTTTCGCCGGGAAGGTCGCTT
GGAGCTCGGAGGTCAGCGCCGAGCAAGCAATACAGATGAGTAATTTGATT
CAGAAAAGCGCCACATCGACAGCTGCCATGACGAATTCGGTATTGCTTGG
GCCGCTGATAACGTTTGGGCTATTTTGTGTGGCGACAAGTTTTGTGGTGA
ACCCTTCCTTGCACACCAAGCGCCTGCAGCATGACAGTCTCGCGCCGTTC
ATGATCCCTCCAGCCCGTACTCGTACCAGTAGCACAACTCGGGTCATGAT
GGCAGGATTCGGGGCAAAACCGAAGGAAACGCCGCCGGTAACAGGAGCGG
GGAGAGGACAGCGGGCCTACGAGCGCCAAGTTCGCTCCTACAAAGGGTTG
CGGGCGGCGGGGGCCGAGGGAATCGACGTGTACGTACATCGGGTTGGCGG
CGACGACAAATTCATTTTCGCCGGGAAGGTCGCTTGGAGCTCGGAGGTCA
GCGCCGAGCAAGCAATACAGTGGCAAAGGGACCTTGTTCTGGATCACGTG
AAGGTACTCGAGCCCCTGTGGAACACCAAGCCATCGCCCCAGATGCGCAT
ATTCACCGCGCCGCTCAATACCGAGGTCAACGTTGCCAAGAACGTTCTCG
ACCTCACGCGCGCGTTGGCAGGCAAGGGCAAGGGCCAGGACAAAGCCACC
GTTAGCACGGACGGAATGACGTCCGCGCAGGTGGGTTTCTCCCCTGAGAT
GTATGAGAAGGGTCAGGACTACTATTACGTGAGGAAGCTGGAGGACGGTC
GATGTCCCGCGCCACCTGCGGAGGTGAAGATTGAAACCATGGACACGCTG
AAGGCAGCGGGAGCCGTGGCCGATGAGGGGTTGCCTACTACGGCAGAGTG
ATGGCAAAGGGACCTTGTTCTGGATCACGTGAAGGTACTCGAGCCCCTGT
GGAACACCAAGCCATCGCCCCAGATGCGCATATTCACCGCGCCGCTCAAT
ACCGAGGTCAACGTTGCCAAGAACGTTCTCGACCTCACGCGCGCGTTGGC
AGGCAAGGGCAAGGGCCAGGACAAAGCCACCGTTAGCACGGACGGAATGA
CGTCCGCGCAGGTGGGTTTCTCCCCTGAGATGTATGAGAAGGGTCAGGAC
TACTATTACGTGAGGAAGCTGGAGGACGGTCGATGTCCCGCGCCACCTGC
GGAGGTGAAGATTGAAACCATGGACACGCTGAAGGCAGCGGGAGCCGTGG
CCGATGAGGGGTTGCCTACTACGGCAGAGTGA
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