mRNA_F-distichus_contig98532.19287.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98532.19287.1
Unique NamemRNA_F-distichus_contig98532.19287.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A6G0Y1X6_APHCR (Uncharacterized protein n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y1X6_APHCR)

HSP 1 Score: 77.0 bits (188), Expect = 3.320e-17
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVH 105
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVH
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVH 35
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A6G0Z8N9_APHCR (Uncharacterized protein n=2 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Z8N9_APHCR)

HSP 1 Score: 75.1 bits (183), Expect = 3.970e-17
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVH 105
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPK VH
Sbjct:    6 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKHVH 40
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A2R7VTR5_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7VTR5_ONCFA)

HSP 1 Score: 72.8 bits (177), Expect = 7.170e-16
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVH 105
            MWNASRFCVSSLRRGHANLLCIVPILVYV PK+VH
Sbjct:   16 MWNASRFCVSSLRRGHANLLCIVPILVYVPPKRVH 50
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A833RU27_9HYME (Uncharacterized protein n=1 Tax=Frieseomelitta varia TaxID=561572 RepID=A0A833RU27_9HYME)

HSP 1 Score: 72.8 bits (177), Expect = 1.140e-15
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVHK 108
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQ HK
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQ-HK 35
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A0N0U5J7_9HYME (Uncharacterized protein n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0N0U5J7_9HYME)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-15
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVHK 108
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQV K
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVRK 36
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: X1X5E7_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X5E7_ACYPI)

HSP 1 Score: 72.0 bits (175), Expect = 1.970e-15
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVH 105
            MWNASRFCVSSLRRGHANLLCIVPILVYV PK VH
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVQPKLVH 35
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: X1X8R0_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X8R0_ACYPI)

HSP 1 Score: 71.2 bits (173), Expect = 2.630e-15
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQV 102
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPK V
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKLV 34
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A6V7HHV1_9HYME (Hypothetical protein n=1 Tax=Heterotrigona itama TaxID=395501 RepID=A0A6V7HHV1_9HYME)

HSP 1 Score: 73.9 bits (180), Expect = 3.040e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQV 102
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQV
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQV 34
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A6G0T8L8_APHGL (Uncharacterized protein n=1 Tax=Aphis glycines TaxID=307491 RepID=A0A6G0T8L8_APHGL)

HSP 1 Score: 72.4 bits (176), Expect = 5.360e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQ 99
            MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQ
Sbjct:    1 MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQ 33
[Close]
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Match: A0A183RKE1_9TREM (Uncharacterized protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183RKE1_9TREM)

HSP 1 Score: 66.6 bits (161), Expect = 9.450e-14
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = -2 
Query:    3 TCFGSTYTKIGTIQRRLAWPLRKDDTQNREAFH 101
            T FG TYTK+G IQRRLAWPLRKDDTQNREAFH
Sbjct:    7 TRFGGTYTKVGMIQRRLAWPLRKDDTQNREAFH 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98532.19287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0Y1X6_APHCR3.320e-17100.00Uncharacterized protein n=1 Tax=Aphis craccivora T... [more]
A0A6G0Z8N9_APHCR3.970e-1797.14Uncharacterized protein n=2 Tax=Aphis craccivora T... [more]
A0A2R7VTR5_ONCFA7.170e-1694.29Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
A0A833RU27_9HYME1.140e-1597.22Uncharacterized protein n=1 Tax=Frieseomelitta var... [more]
A0A0N0U5J7_9HYME1.210e-1597.22Uncharacterized protein n=1 Tax=Melipona quadrifas... [more]
X1X5E7_ACYPI1.970e-1594.29Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
X1X8R0_ACYPI2.630e-1597.06Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
A0A6V7HHV1_9HYME3.040e-15100.00Hypothetical protein n=1 Tax=Heterotrigona itama T... [more]
A0A6G0T8L8_APHGL5.360e-14100.00Uncharacterized protein n=1 Tax=Aphis glycines Tax... [more]
A0A183RKE1_9TREM9.450e-1487.88Uncharacterized protein n=1 Tax=Schistosoma rodhai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98532contigF-distichus_contig98532:1957..2094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog7029.ACYPI080765-PA
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E6FF@1,2SD58@2759,3ACWI@33154,3BW4C@33208,3DC3V@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.7036765-CDS-F-distichus_contig98532:1956..20941622931164.7036765-CDS-F-distichus_contig98532:1956..2094Fucus distichus monoicousCDSF-distichus_contig98532 1957..2094 +
1690886186.41489-CDS-F-distichus_contig98532:1956..20941690886186.41489-CDS-F-distichus_contig98532:1956..2094Fucus distichus monoicousCDSF-distichus_contig98532 1957..2094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98532.19287.1prot_F-distichus_contig98532.19287.1Fucus distichus monoicouspolypeptideF-distichus_contig98532 1957..2094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98532.19287.1

>prot_F-distichus_contig98532.19287.1 ID=prot_F-distichus_contig98532.19287.1|Name=mRNA_F-distichus_contig98532.19287.1|organism=Fucus distichus monoicous|type=polypeptide|length=46bp
MWNASRFCVSSLRRGHANLLCIVPILVYVLPKQVHKCLQINSTRI*
back to top

mRNA from alignment at F-distichus_contig98532:1957..2094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98532.19287.1 ID=mRNA_F-distichus_contig98532.19287.1|Name=mRNA_F-distichus_contig98532.19287.1|organism=Fucus distichus monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at F-distichus_contig98532:1957..2094+ (Fucus distichus monoicous)
ATGTGGAACGCTTCACGATTTTGCGTGTCATCCTTGCGCAGGGGCCATGC
TAATCTTCTCTGTATCGTTCCAATTTTAGTATATGTACTGCCGAAGCAAG
TACATAAATGCTTGCAGATTAACAGCACTAGGATATAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig98532:1957..2094+

>mRNA_F-distichus_contig98532.19287.1 ID=mRNA_F-distichus_contig98532.19287.1|Name=mRNA_F-distichus_contig98532.19287.1|organism=Fucus distichus monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at F-distichus_contig98532:1957..2094+ (Fucus distichus monoicous)
ATGTGGAACGCTTCACGATTTTGCGTGTCATCCTTGCGCAGGGGCCATGC
TAATCTTCTCTGTATCGTTCCAATTTTAGTATATGTACTGCCGAAGCAAG
TACATAAATGCTTGCAGATTAACAGCACTAGGATATAAATGTGGAACGCT
TCACGATTTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTG
TATCGTTCCAATTTTAGTATATGTACTGCCGAAGCAAGTACATAAATGCT
TGCAGATTAACAGCACTAGGATATAA
back to top