mRNA_F-distichus_contig9844.19279.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 5.350e-134 Identity = 198/393 (50.38%), Postives = 280/393 (71.25%), Query Frame = 1
Query: 535 PAPIFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARLDAPLEECRTISVRGLKGISEEDFKQFLEEESGVAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDVSLQTMKKRVREPRTGADSAPPFGEDAKGGIVMVLKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDVSRYGDGTK-SPRLSHKAAIENARSTVPAALRKKYPDLPCVVVSGLPFHKSKTDVTEYLAEQGVPETAVEEMQMPLFLSTQNNTGACWLVINEASYGGYAYNRIMSLNGAIMDDRWVTIADA 1710
P P++ +QVDG+ F+++ EE+E+WF +AG +P VT+ + PE S RAGQNKG+AYL EE+ KALS+SGRS+G+RW++I+RL PLEE TI+++GL+G E + EE G APV V++V +NP R++ GLAF +FE P+ A+ L LDG NI ++W+DVSL MK+ E R G S PPFG D +V++LKGLPFSL +DEIKAF+L ++I E+E+V + VPK N T NTGIA +H K + + + + L+G++IG+RWVDVSR+ + K + R SH+ +E RS V +L++K+P LP V +SGLPFHK++ +V E+L GVP +A+ E++MPLFL TQNNTG CW+VI++ AY +M LNGA +DDRW+T+ DA
Sbjct: 117 PEPLYLIQVDGLPFTMATEELEQWFEEAGCSPPKVTVPLWPERSIRAGQNKGKAYLHFSGEEDVRKALSLSGRSIGERWINISRLAQPLEEACTITIKGLQGFPESEVVAIFEEAVGAAPVEVKIV-ENPNRSR-GLAFIKFEMPDLARAALHLDGTNIQNQWVDVSLHVMKQSSNEFRLGTGSQPPFGPDVPDEMVVMLKGLPFSLLEDEIKAFILNHEIAEDEIVAINVPKFNETQFNTGIAMIHFKSDESVARALELKGTHIGERWVDVSRWNERNKPNQRKSHRDQMEETRSAVKTSLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGTCWVVISDEG----AYETLMELNGATLDDRWLTVVDA 503
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE) HSP 1 Score: 404 bits (1038), Expect = 2.040e-132 Identity = 235/534 (44.01%), Postives = 327/534 (61.24%), Query Frame = 1
Query: 37 MTSLIRTFARGAPRATGLVARGSAYVRPTRARGVRILLTRPLSGLYRAQPHRISVDYRACGPQQTGSALAQSSGCLTQPQRDQLRRPMSFQSDNHHHVPSQDAVPTEENTPSVDVTADDASTPEDTDTAAIETDGDYATTEAEGAAAQATGSAEDGEDGDMAS--GNAPAPIFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARLDAPLEECRTISVRGLKGISEEDFKQFLEEESGVAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDVSLQTMKKRVREPRTGADSAPPFGEDAKGGIVMVLKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDVSRYGDGTK-SPRLSHKAAIENARSTVPAALRKKYPDLPCVVVSGLPFHKSKTDVTEYLAEQGVPETAVEEMQMPLFLSTQNNTGACWLVINEAS 1629
MTSL+ T ARG P+A +A G A +R TR R +R L PLS R SAL+ + T Q+ Q RR +S Q S+D P E AT A G A ATG E+ + ++ +P P++ +QV+G+ F+++ EE+E+WF +A +PA V + + PE S RAGQNKG AYL +EE+T KALS+SGRS+GDRW++I+RL PLEE T++++GL G E + EE G APV V ++ +NP R++ GLAF +FE+P+ A+ L LDG NI ++W+DVSL MK+ +E R G+ S PPFG D +V++LKGLPFSL DDEIKAF+L +DI E+E+V M VPK N T NTGIA +H K + + + + L+G+YIG+RWVDVSR+ D K + + SH+ +E RS V A+L++K+P LP V +SGLPFHK++ +V E+L GVP +A+ E++MPLFL TQNNTGACW+VI++ S
Sbjct: 1 MTSLLSTIARGTPKAARFMAGGGAGLRATRIRTLRTLTAGPLSADSRPS---------------LSSALSPAPAAPTHQQQLQ-RRFLSIQ--------SEDINPQEAG----------------------------ATAAAAGEAPAATGEGEEVSEEEVTPPPAGSPEPLYLIQVNGLPFTMATEEIEQWFDEAACSPAKVVVPLWPERSIRAGQNKGMAYLYFSSEEDTQKALSLSGRSIGDRWINISRLVQPLEESCTVTIKGLHGFPEGEVVAIFEEAVGAAPVEVNII-ENPNRSR-GLAFVKFETPDLARAALHLDGSNIQNQWVDVSLHVMKQTSKEFRLGSGSQPPFGPDVPDEMVVMLKGLPFSLLDDEIKAFILNHDIAEDEIVAMSVPKFNETQFNTGIAMIHFKSDESVARALELKGTYIGERWVDVSRWNDRNKPNQKKSHRQQMEETRSAVQASLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGACWVVISDVS 480
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: UPI00097DE4AF (G-rich sequence factor 1-like n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097DE4AF) HSP 1 Score: 80.9 bits (198), Expect = 6.120e-13 Identity = 79/291 (27.15%), Postives = 135/291 (46.39%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL-------------DAPLEECRTISVRGLK-GISEEDFKQFLEEESG--VAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDVSLQTMKK---RVREPRTGADSAPPFGEDAKGGIVMV---LKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDV 1350
+F VQV G+ +S S +++ +F + + + + R G++ GRA++ELE+EE+ KAL + +G R++ + + AP + + +RGL SE D +F SG +A + VVPD+ RN SG AF F S E A L D I SR+I+V T ++ R R+ + G + + ++GLPF S ++I F +++ + ++ T+ + F +D AAA M+ YIG+R+V++
Sbjct: 42 VFIVQVKGLPWSCSAQDLMHFFSECRIRDGLKGIHLPVN---RLGRSSGRAFIELEHEEDVNKALEKHRQYLGPRYIEVYEVTNSDAETILRKAVQAPAADS-VVRIRGLPFSCSEADIVKFF---SGLDIAENGIMVVPDHKGRN-SGEAFVRFTSQEAASGALQRDRHLIGSRYIEVFPSTSEEINSRRRKTMGSTQTNHRIGSQLSSTVPLHFIHMRGLPFQASGEDIVKFFFPLAVSK---ILIECGADGRTSGEADVYFTCHQDAAAA---MSKDRQYIGERYVEL 318
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: UPI001FB7E995 (G-rich sequence factor 1 isoform X1 n=2 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB7E995) HSP 1 Score: 78.2 bits (191), Expect = 8.040e-12 Identity = 79/304 (25.99%), Postives = 138/304 (45.39%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL-----DAPLEEC------------RTISVRGLK-GISEEDFKQFLEEESG--VAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDV------SLQTMKKRVREP---RTGADSAPPFG------EDAKGGIVMVLKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDV 1350
++ VQ+ G+ +S + E + ++F D + + + E R G+ GRA++ELE+EE+ KAL +G R++ + + +A L+E + +RGL ++ED F SG +A + +V D RN SG AF +F S EDA K L D N+ +R+I+V + + KR P ++G S+P G + + ++GLP+ ++ DEI F +++ + H N + F +D AA M+ IG R++++
Sbjct: 87 VYLVQLKGLPWSCTCENILQFFSDCRINGGEKGIHL---ELDRHGRASGRAFIELEHEEDVCKALEKHRHYLGPRYIEVYEVTNTDAEAVLKEVIQKQANPPPADDGVVRIRGLPYSCTKEDIADFF---SGLNIAENGITIVTDFKGRN-SGNAFVQFASQEDADKALLKDRENMGNRYIEVFPSRRDDIHSTWKRKMSPDPSQSGFVSSPQAGHRNVLPQRLSMNHYVHMRGLPYQVTADEIVMFFSPLSLSK---IVFNFNNHGRLNGEADVYFHSNQDAIAA---MSRDKMNIGQRYIEL 377
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: UPI00159BFBA7 (G-rich sequence factor 1 n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI00159BFBA7) HSP 1 Score: 77.4 bits (189), Expect = 1.520e-11 Identity = 81/309 (26.21%), Postives = 139/309 (44.98%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL-----DAPLEECRT-------ISVRGLK-GISEEDFKQFLEEESG--VAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDV-------------------------SLQTMKKRVREPRTGADSAPPFGEDAKGGIVMVLKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDV 1350
+F VQV G+ +S S +++ +F + + + + + R G++ GRA++ELE+EE+ KAL + +G R+V ++ + +A L + T + +RGL ++D QF SG +A + VV D+ RN SG AF +F S E A L D I +R+I+V S+Q + V +T + P A + ++GLPF S ++I F +++ + ++ N G+ F +D AAA M YIG+R+V++
Sbjct: 92 LFIVQVKGLPWSCSAQDLMHFFSECRIRDGLKGIHLTVD---RLGRSSGRAFIELEHEEDVNKALEKHRQYLGPRYVEVSEVTNSDAEAILNKAVTAPAESWVVKLRGLPFSCCQDDIVQFF---SGLDIAENGITVVTDHRGRN-SGEAFVQFGSQEAADGALQRDRDVIGNRYIEVFPSTSEEIHSSWRKKKGMSSGSAQSSVQPGNRNVSSAQTNHRTGSPLSSTAPLHYIH-MRGLPFQASGEDIVKFFSPLAVSK---ILIECGADGRRNGEAGVYFTSHQDAAAA---MTRDRQYIGERYVEL 386
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: A0A1A7WY58_9TELE (G-rich RNA sequence binding factor 1 n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WY58_9TELE) HSP 1 Score: 73.6 bits (179), Expect = 2.650e-10 Identity = 68/246 (27.64%), Postives = 117/246 (47.56%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL-----DAPLEECR-------TISVRGLK-GISEEDFKQFLEEESGVAPVS--VRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDV-------------------SLQTMKKRVREPRTGADSAPPFGEDAKGGIVMVLKGLPFSLSDDEIKAF 1179
++ VQV G+ +S + +++ ++F D G+ + + + R G+ GRA++E+E+EE+ KAL + +G R+V + + +A L++ + +RGL E+D F SG+ V + +V DN ++ SG AF +F S E+A K L D I R+I+V S Q ++ V P+T + PP + V L+GLPF +S ++I F
Sbjct: 97 VYIVQVKGLPWSCTAQDLLQFFSDCGIRAGENGIHLTQD---RLGRPSGRAFIEMEHEEDVSKALEKHRQYLGSRYVEVFEVTNSDAEAILKKSSDTRADNAVVLLRGLPFSCREDDLINFF---SGLNIVENGITIVTDNKGKS-SGEAFVQFSSQEEADKALLRDRELIGHRYIEVFPSSRDQIHSSWRRRSLNCSHQANRRTVSPPQTNNRAVPPQSSNVAAHYVH-LRGLPFQVSGEDIVKF 334
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: A0A1A8B945_NOTFU (G-rich RNA sequence binding factor 1 n=7 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B945_NOTFU) HSP 1 Score: 73.2 bits (178), Expect = 3.490e-10 Identity = 72/303 (23.76%), Postives = 137/303 (45.21%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL-DAPLE-----------ECRTISVRGLK-GISEEDFKQFLEEESG--VAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDV-------------------SLQTMKKRVREPRTGADSAPPFGEDAKGGIVMVLKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDV 1350
++ VQV G+ +S + +++ ++F D + + + + R G+ GRA++E+E+E++ ++AL + +G R+V + + D+ E + + +RGL E+D F SG +A + +V DN +N SG AF +F S E+A K L D I R+I+V S Q ++ + P+T + PP D + L+GLPF +S ++I F +++ + ++ + + F +D A L+ IG R++++
Sbjct: 95 VYLVQVKGLPWSCTAQDLLQFFSDCRIHAGEKGIHLIED---RPGRPSGRAFIEMEHEQDVVRALGKHRQYLGSRYVEVFEVTDSDAEAILKKPSGTRADDAVVLLRGLPFSCKEDDIINFF---SGLDIAEGGITIVADNRGKN-SGDAFVQFSSVEEANKALQRDREFIGHRYIEVFPSSRSQIHSSWRMRGSLNSSQQDRRTISPPQTNTKAVPPEMSDVPNHYLH-LRGLPFQVSGEDIVKFFSPLKVSK---ILLECGPDGRLSGEADVFFSSHEDAVTAMSRDRLK---IGHRYIEL 383
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: A0A3Q3MSB1_9LABR (G-rich RNA sequence binding factor 1 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3MSB1_9LABR) HSP 1 Score: 70.1 bits (170), Expect = 1.670e-9 Identity = 69/234 (29.49%), Postives = 110/234 (47.01%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARLDAPLEECRTISVRGLK-GISEEDFKQFLEEESGVAPVS--VRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDV-------------------SLQT---MKKRVREPRTGADSAPPFGEDAKGGIVMVLKGLPFSLSDDEI 1170
+F VQV G+ +S S +++ ++F + + + + + R G+ GRA+LELE+EE+ KAL + +G R+V L +P E + +RGL +E D QF SG+ V + +V + +N SG A+ +F S E A K L D I +R+I+V S QT M PRTG + A + ++GLPF +S ++I
Sbjct: 10 VFIVQVKGLPWSCSVQDLLQFFSECRIRDGEKGIHLPLD---RMGRPSGRAFLELEHEEDVSKALEKHRQYLGPRYVEGLSLWSPTSEDGVVRLRGLPFSCNEADVVQFF---SGLDIVQNGITLVKNTKGKN-SGEAYVQFSSQEAANKALQRDREVIGNRYIEVFPSKRAEIRTEWQRRSSSSSPQTSYQMPLNQAYPRTGEGISDLLFSSAPPVHFIHMRGLPFQVSGEDI 236
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: A0A3B3BRV8_ORYME (G-rich sequence factor 1 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BRV8_ORYME) HSP 1 Score: 70.9 bits (172), Expect = 1.790e-9 Identity = 81/304 (26.64%), Postives = 135/304 (44.41%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL---DA---------PLEECRTISVRGLK-GISEEDFKQFLEEESGVAPVS--VRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDVS-------LQTMKKRVREPRTGAD--------SAP-----PFGEDAKGGIVMVLKGLPFSLSDDEIKAFLLQYDITEEEMVQMKVPKHNNTNSNTGIAFLHLKDEAAADKVMALRGSYIGDRWVDV 1350
+F VQV G+ +S S +++ +F + + + + + R G+ GRA++E+E+EE+ KAL + +G R+V ++ + DA P E + +RGL SE+D F SG+ V V +V D RN SG AF +F S E+A K L + R+I+V T K+R P SAP P +A + ++GLPF S ++I F Y +++ + ++ N + F +D AA M+ IG R++++
Sbjct: 79 VFIVQVKGLPWSCSVQDLLRFFSECRIRDGERGVHLTVD---RLGRPSGRAFIEMEHEEDVSKALEKHRQYLGPRYVEVSEVTNSDAEAILQHAAPPPAEDGVVKLRGLPFSCSEDDVLHFF---SGLDVVENGVTMVTDGRGRN-SGEAFVQFSSQEEAGKALQKHREMMGHRYIEVFPSRSSEIRSTWKRRTSPPPQSXXXXXAGRPASAPHRPVSPQSSEASRHFIH-MRGLPFQTSGEDISKFFSPYVVSK---IMIECGPDGRPNGEADVYFSCHRDAVAA---MSRDRMNIGHRYIEL 368
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Match: UPI001FAD196E (G-rich sequence factor 1 n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD196E) HSP 1 Score: 70.9 bits (172), Expect = 2.040e-9 Identity = 63/245 (25.71%), Postives = 118/245 (48.16%), Query Frame = 1
Query: 544 IFQVQVDGIAFSVSREEVEEWFRDAGVTPANVTLIMRPEESPRAGQNKGRAYLELENEEETLKALSISGRSMGDRWVSIARL---DAPL---------EECRTISVRGLK-GISEEDFKQFLEEESGVAPVSVRVVPDNPVRNQSGLAFAEFESPEDAKKVLSLDGINIMSRWIDV------SLQTMKKRVREPRTGADSA-----PPFGEDAKGGIVMV---------LKGLPFSLSDDEIKAF 1179
++ VQV G+ +S + +++ ++F D + + + + R G+ GRA++E+E+EE+ KAL + +G R+V + + DA + E + +RGL +E+D F + +A + ++ ++ +N SG AF +F S E+A K L D I R+I+V ++Q ++R R + SA P + +GG + ++GLPF +S ++I F
Sbjct: 102 VYIVQVKGLPWSCTAQDLLQFFSDCRIHDGEKGIHLTLD---RVGRPSGRAFIEMEHEEDVSKALEKHRQYLGPRYVEVYEVTNCDAEVILNKAAATGAEDGVVLLRGLPFSCTEDDIAHFFSD-LNIAENGITIITNSRGKN-SGEAFVQFSSQEEADKALQKDRELIGHRYIEVFPSNRDNIQAARRRTRMSLNPSQSASRRPVPDSHTNHRGGSYQISDASTHYIHMRGLPFQVSGEDIVKF 341 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9844.19279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig9844.19279.1 >prot_F-distichus_contig9844.19279.1 ID=prot_F-distichus_contig9844.19279.1|Name=mRNA_F-distichus_contig9844.19279.1|organism=Fucus distichus monoicous|type=polypeptide|length=571bp RRPRQASLSKFLMTSLIRTFARGAPRATGLVARGSAYVRPTRARGVRILLback to top mRNA from alignment at F-distichus_contig9844:5847..10704+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig9844.19279.1 ID=mRNA_F-distichus_contig9844.19279.1|Name=mRNA_F-distichus_contig9844.19279.1|organism=Fucus distichus monoicous|type=mRNA|length=4858bp|location=Sequence derived from alignment at F-distichus_contig9844:5847..10704+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig9844:5847..10704+ >mRNA_F-distichus_contig9844.19279.1 ID=mRNA_F-distichus_contig9844.19279.1|Name=mRNA_F-distichus_contig9844.19279.1|organism=Fucus distichus monoicous|type=CDS|length=3426bp|location=Sequence derived from alignment at F-distichus_contig9844:5847..10704+ (Fucus distichus monoicous)back to top |