mRNA_F-distichus_contig98027.19239.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig98027.19239.1
Unique NamemRNA_F-distichus_contig98027.19239.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig98027.19239.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.440e-32
Identity = 83/158 (52.53%), Postives = 100/158 (63.29%), Query Frame = 3 
Query:  111 KESNPIGGAEDLGTLTRSLWSGLGKTGD-------------------FAGGDGGGKRLVGQASVAGGYWGDE-------ETRSRLIAFADTLRAGESALSPAVFDAGGGRRSEVKIYFALMHLHPLDVRITYRSTPGSEVQDAEELTLSTMTQLDNAR 506
            K+S    G  ++G  TR+LW+ LG  GD                    AG  G G+    ++S  GG  G           R+RL+AFA+TL AGESALSP VF+ GGG+R+EVKIYFALMHLHPLDVRITYR TPGS+VQDAEELTLSTM QL++AR
Sbjct: 2076 KDSRRSRGGINIGDYTRTLWNSLG-AGDNAAXXXXXXXXXXXXXXXXXAGRGGTGESGEARSSSCGGGEGRRYLVESANSNRTRLLAFAETLAAGESALSPGVFEVGGGQRAEVKIYFALMHLHPLDVRITYRGTPGSDVQDAEELTLSTMAQLNDAR 2232
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BLAST of mRNA_F-distichus_contig98027.19239.1 vs. uniprot
Match: D8LME1_ECTSI (Similarities to vacuolar protein sorting-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME1_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.480e-31
Identity = 63/77 (81.82%), Postives = 72/77 (93.51%), Query Frame = 3 
Query:  276 RSRLIAFADTLRAGESALSPAVFDAGGGRRSEVKIYFALMHLHPLDVRITYRSTPGSEVQDAEELTLSTMTQLDNAR 506
            R+RL+AFA+TL AGESALSP VF+ GGG+R+EVKIYFALMHLHPLDVRITYR TPGS+VQDAEELTLSTM QL++AR
Sbjct:  114 RTRLLAFAETLAAGESALSPGVFEVGGGQRAEVKIYFALMHLHPLDVRITYRGTPGSDVQDAEELTLSTMAQLNDAR 190
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig98027.19239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0E6_9PHAE2.440e-3252.53PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LME1_ECTSI3.480e-3181.82Similarities to vacuolar protein sorting-associate... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig98027contigF-distichus_contig98027:6..1922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D8LME1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Ec32 ortholog descriptionsimilarities to vacuolar protein sorting-associated protein
Ec32 orthologEc-05_002440.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size506
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig98027.19239.1prot_F-distichus_contig98027.19239.1Fucus distichus monoicouspolypeptideF-distichus_contig98027 6..1893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.832976-CDS-F-distichus_contig98027:5..1401622931158.832976-CDS-F-distichus_contig98027:5..140Fucus distichus monoicousCDSF-distichus_contig98027 6..140 -
1690886183.6542768-CDS-F-distichus_contig98027:5..1401690886183.6542768-CDS-F-distichus_contig98027:5..140Fucus distichus monoicousCDSF-distichus_contig98027 6..140 -
1622931158.8528152-CDS-F-distichus_contig98027:1551..18931622931158.8528152-CDS-F-distichus_contig98027:1551..1893Fucus distichus monoicousCDSF-distichus_contig98027 1552..1893 -
1690886183.666551-CDS-F-distichus_contig98027:1551..18931690886183.666551-CDS-F-distichus_contig98027:1551..1893Fucus distichus monoicousCDSF-distichus_contig98027 1552..1893 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.8728874-UTR-F-distichus_contig98027:1893..19221622931158.8728874-UTR-F-distichus_contig98027:1893..1922Fucus distichus monoicousUTRF-distichus_contig98027 1894..1922 -
1690886183.6799278-UTR-F-distichus_contig98027:1893..19221690886183.6799278-UTR-F-distichus_contig98027:1893..1922Fucus distichus monoicousUTRF-distichus_contig98027 1894..1922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig98027.19239.1

>prot_F-distichus_contig98027.19239.1 ID=prot_F-distichus_contig98027.19239.1|Name=mRNA_F-distichus_contig98027.19239.1|organism=Fucus distichus monoicous|type=polypeptide|length=159bp
MRLREKFGVKPSRSGGSSNITSKRGSGKESNPIGGAEDLGTLTRSLWSGL
GKTGDFAGGDGGGKRLVGQASVAGGYWGDEETRSRLIAFADTLRAGESAL
SPAVFDAGGGRRSEVKIYFALMHLHPLDVRITYRSTPGSEVQDAEELTLS
TMTQLDNAR
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mRNA from alignment at F-distichus_contig98027:6..1922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig98027.19239.1 ID=mRNA_F-distichus_contig98027.19239.1|Name=mRNA_F-distichus_contig98027.19239.1|organism=Fucus distichus monoicous|type=mRNA|length=1917bp|location=Sequence derived from alignment at F-distichus_contig98027:6..1922- (Fucus distichus monoicous)
AGGTGGAACAAGCCGTCTTCCTCTCGCTGATGCGTCTCCGCGAAAAGTTC
GGGGTGAAGCCGTCGCGCAGCGGCGGAAGCAGTAACATCACCAGCAAACG
TGGTAGCGGGAAGGAGAGCAACCCGATCGGCGGTGCCGAGGACCTCGGAA
CCCTTACGCGGAGCCTGTGGAGCGGCCTCGGAAAGACGGGCGACTTCGCC
GGGGGCGATGGTGGAGGAAAGAGACTCGTGGGACAGGCGTCGGTGGCGGG
GGGCTACTGGGGCGACGAGGAGACGCGCTCTAGGCTGATTGCGTTTGCGG
ACACGCTGAGAGCCGGCGAGAGCGCCCTGTCGCCCGCCGTGTTCGATGCG
GGAGGTGGAAGACGCTCGGAGGTGCGCCTTATCTGGTTTGGGATGGGCGA
ATATATTTTTTGCGCTTTTGAAGATGTTTTTTATTTTTCGTGTTTTTATT
TTTTGCTTGGTGGGGGGACGAGGACTCTCTCGCCAAGAAGGGGAATTTCC
CCTTGTATCATGTCCAAAAGCGGGTAACCTAACAAAAACCCTCCAGAAAA
CAAGAGTTGACAGTCCCTCACAAGACTCTTTGCTTAATATTGTAGATGCT
ACAGAGAGTATTATTCTAGTGATAATATACGAAGCAATACTAATATTAAT
ATGAATGCTGTAGGAATATTACTAAGCAATAATAATATTAACACTAATGC
TGTATTAACATTACTAAGGAATATCAATGTTAGTATACCTGGTGTATTAT
AGTATAGTATAGTATTATAAGTATCTGTTTCGAGACGACCAAAAAGAGCA
CGGCGTCTCTCGGCAGCAACACCCACAAACGAAATCGAACCTTTCATTCA
CTAATGCTTGTTAGCGTAGTGTGTTCATGTCTTACCGACAACGTGGCCCC
AGCACTTAGAGGACGCTTACTCGGTACATCGCTGACAGGCTGAAACGATG
GAATATGAATATGAATAGCTTTGCGTGATAAAATACTGATGCCTGTATCT
GGTATTTTATTTCATTTTATATTTTTACGCGAAATTCGAAGCTCTGTTGT
TGTGCGCCTCGTATGGCAATTTTTTACCGTAATCGTCCCATACAGTGGAG
GGTTTACCATGAGTTAGAGAAGAAGTCGAAGCCATGTCCATGGCCATTTA
AGAGATTACCGCAATATATATATATATATATATATGAAATGGTATTAATA
GTGTAGAGATAATGTTGCCGGGGGAGATGCGGGACGTCGCGTCGTAGAGC
TTGAGAGCGATAGGGCCGAGTTGTCATCATTTCGTTTTGAAAGGCAATGG
CTGCTTCTTCGCCCTTCCGCAAAGTTGAAGCTAGTTGATTGGCAGATTGC
CAACAAGGGGTACAGTACTTCTGCAGCTGAATAGAAGATATAGGAGGGTA
TCCCGTGTTTTTTATCCAAAAAGGGGAATCGTGTGGAATGATACCATGTT
GATGTGTGAAATGAAGGTGGTCTTCACGGTTTCTTTGGCTACCCCGATTT
CTGCCACAAATCAGAGGGGTATGCCCAATTTTGGCGAGTCCCCCCTTCCT
TTTTGCTCGGCGGGAAAATGGCTCTACACTTTTGTGTTTGTTGTTGAGGT
TTTCTTTATTCTTTTTTTAGGACTGGTGGCGAAATCTTGGCCTCTTCTCA
CCTTATTACCCCGTTCCCGCTTTTCCTCCTCCCAAAACCTCTCCTCAAAA
CCCTGCCGACGCACCTTTGACTGTTGACTGCTGACTGCCGCTTGGGATGT
GATTTTTCTTTTCGATGCGCCCGCTCGACCAGGTCAAGATATACTTCGCG
CTTATGCATCTACACCCCCTCGACGTGCGCATCACGTATCGATCCACCCC
CGGGTCGGAGGTCCAAGACGCCGAGGAGCTGACTCTGTCTACGATGACTC
AGCTCGACAACGCAAGG
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Coding sequence (CDS) from alignment at F-distichus_contig98027:6..1922-

>mRNA_F-distichus_contig98027.19239.1 ID=mRNA_F-distichus_contig98027.19239.1|Name=mRNA_F-distichus_contig98027.19239.1|organism=Fucus distichus monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at F-distichus_contig98027:6..1922- (Fucus distichus monoicous)
ATGCGTCTCCGCGAAAAGTTCGGGGTGAAGCCGTCGCGCAGCGGCGGAAG
CAGTAACATCACCAGCAAACGTGGTAGCGGGAAGGAGAGCAACCCGATCG
GCGGTGCCGAGGACCTCGGAACCCTTACGCGGAGCCTGTGGAGCGGCCTC
GGAAAGACGGGCGACTTCGCCGGGGGCGATGGTGGAGGAAAGAGACTCGT
GGGACAGGCGTCGGTGGCGGGGGGCTACTGGGGCGACGAGGAGACGCGCT
CTAGGCTGATTGCGTTTGCGGACACGCTGAGAGCCGGCGAGAGCGCCCTG
TCGCCCGCCGTGTTCGATGCGGGAGGTGGAAGACGCTCGGAGATGCGTCT
CCGCGAAAAGTTCGGGGTGAAGCCGTCGCGCAGCGGCGGAAGCAGTAACA
TCACCAGCAAACGTGGTAGCGGGAAGGAGAGCAACCCGATCGGCGGTGCC
GAGGACCTCGGAACCCTTACGCGGAGCCTGTGGAGCGGCCTCGGAAAGAC
GGGCGACTTCGCCGGGGGCGATGGTGGAGGAAAGAGACTCGTGGGACAGG
CGTCGGTGGCGGGGGGCTACTGGGGCGACGAGGAGACGCGCTCTAGGCTG
ATTGCGTTTGCGGACACGCTGAGAGCCGGCGAGAGCGCCCTGTCGCCCGC
CGTGTTCGATGCGGGAGGTGGAAGACGCTCGGAGGTCAAGATATACTTCG
CGCTTATGCATCTACACCCCCTCGACGTGCGCATCACGTATCGATCCACC
CCCGGGTCGGAGGTCCAAGACGCCGAGGAGCTGACTCTGTCTACGATGAC
TCAGCTCGACAACGCAAGGGTCAAGATATACTTCGCGCTTATGCATCTAC
ACCCCCTCGACGTGCGCATCACGTATCGATCCACCCCCGGGTCGGAGGTC
CAAGACGCCGAGGAGCTGACTCTGTCTACGATGACTCAGCTCGACAACGC
AAGG
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