mRNA_F-distichus_contig97924.19235.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97924.19235.1
Unique NamemRNA_F-distichus_contig97924.19235.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97924.19235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97924contigF-distichus_contig97924:472..2161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1690
Cds size1239
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97924.19235.1prot_F-distichus_contig97924.19235.1Fucus distichus monoicouspolypeptideF-distichus_contig97924 586..1824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.463686-UTR-F-distichus_contig97924:471..5851622931158.463686-UTR-F-distichus_contig97924:471..585Fucus distichus monoicousUTRF-distichus_contig97924 472..585 +
1690886183.4923723-UTR-F-distichus_contig97924:471..5851690886183.4923723-UTR-F-distichus_contig97924:471..585Fucus distichus monoicousUTRF-distichus_contig97924 472..585 +
1622931158.494226-UTR-F-distichus_contig97924:1824..21611622931158.494226-UTR-F-distichus_contig97924:1824..2161Fucus distichus monoicousUTRF-distichus_contig97924 1825..2161 +
1690886183.517838-UTR-F-distichus_contig97924:1824..21611690886183.517838-UTR-F-distichus_contig97924:1824..2161Fucus distichus monoicousUTRF-distichus_contig97924 1825..2161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.4804175-CDS-F-distichus_contig97924:585..18241622931158.4804175-CDS-F-distichus_contig97924:585..1824Fucus distichus monoicousCDSF-distichus_contig97924 586..1824 +
1690886183.5045328-CDS-F-distichus_contig97924:585..18241690886183.5045328-CDS-F-distichus_contig97924:585..1824Fucus distichus monoicousCDSF-distichus_contig97924 586..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97924.19235.1

>prot_F-distichus_contig97924.19235.1 ID=prot_F-distichus_contig97924.19235.1|Name=mRNA_F-distichus_contig97924.19235.1|organism=Fucus distichus monoicous|type=polypeptide|length=413bp
MCCMSCRGRRKCNPSALHNDKNRRATAKTTLPVVESNCLYLLSTLEPPAC
MIKRLRSPSLPTASFFSLEQELLTKILSLGLRPGLTTDFSCTTHTPLYLV
SNAFHRPIHHPSLSILLISSSARFAALRASPSVLAHPSASCGGGGGVCNT
SSSTISSRHLVTVSSSTRPPSPADTSELRERCESEGIGIFLGSGEFWKDD
HAYAGVAGGDGESTFDRPPPRAPPPPPPPPPPPPFLVPAPFHPFFDSRLP
TSLWLRAPRPLRPSFSRLLASVFLRPELADLLRGSRLGVDDVVALSSVPP
PLPPPPRVGPPRGPLPFPLSFARLALLRPSPSPAPTLSLAAGVDIAAEVG
RDGVGGRDGAGENIEDLDSPSGLSIERNFFRNRSCSAAIRRGVTVGGAGE
GAYCGCCCSCCC*
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mRNA from alignment at F-distichus_contig97924:472..2161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97924.19235.1 ID=mRNA_F-distichus_contig97924.19235.1|Name=mRNA_F-distichus_contig97924.19235.1|organism=Fucus distichus monoicous|type=mRNA|length=1690bp|location=Sequence derived from alignment at F-distichus_contig97924:472..2161+ (Fucus distichus monoicous)
GCCAACTCGAAAAACGACCCTCAAGAAAGACAGATTAAAGGCAACAGCAA
AGAAACGTACGCTTTATTCGTAGCTCTTTCGTGCTGCAGAAGGCAACACA
CGGCACAACCGGTAATGTGTTGCATGTCCTGCCGCGGACGGAGAAAATGT
AATCCTTCGGCGCTGCACAACGACAAAAACAGGAGGGCGACCGCCAAAAC
GACACTACCTGTAGTGGAATCAAACTGTCTGTATCTCCTTTCTACGTTGG
AGCCCCCCGCCTGTATGATAAAACGACTGCGTTCACCATCTCTACCTACT
GCAAGCTTTTTCTCTCTAGAGCAAGAGCTGTTGACTAAAATCCTGTCGTT
AGGCCTAAGACCAGGATTGACAACTGACTTCTCCTGTACCACGCACACAC
CCTTGTACCTTGTTTCAAACGCTTTTCATCGGCCAATTCATCACCCCAGC
CTCAGCATCCTTTTGATATCGTCCTCTGCTCGCTTTGCGGCGCTTCGGGC
CTCCCCTTCTGTCCTCGCGCATCCCTCCGCGAGTTGCGGCGGCGGAGGTG
GCGTGTGTAACACCTCATCTTCCACCATATCATCTCGACATTTGGTCACC
GTCTCCTCCAGCACGAGGCCCCCGTCTCCCGCGGACACGTCGGAGCTGAG
GGAGAGGTGCGAAAGCGAAGGAATCGGGATATTCTTAGGATCTGGAGAAT
TCTGGAAGGACGACCACGCATATGCCGGAGTCGCGGGCGGCGATGGTGAA
AGCACTTTCGACCGTCCACCCCCGCGAGCCCCCCCTCCTCCTCCGCCGCC
GCCGCCGCCGCCACCATTCCTTGTCCCGGCGCCTTTCCACCCTTTCTTCG
ACTCGCGGCTGCCGACTTCGTTGTGGCTTCGGGCCCCTCGACCTTTGCGT
CCGTCTTTCTCGCGGTTGCTCGCCTCTGTGTTCCTGCGGCCCGAGCTCGC
CGACCTCTTGCGCGGCTCTCGCTTAGGAGTCGATGATGTCGTGGCGCTAT
CCTCGGTACCGCCACCACTCCCGCCTCCACCACGAGTCGGCCCGCCGCGT
GGGCCTTTACCTTTTCCTCTATCGTTTGCCCGACTTGCACTGCTCCGGCC
ATCACCCTCACCGGCTCCTACGCTTTCGCTGGCAGCCGGCGTCGACATCG
CTGCCGAGGTCGGCAGAGACGGGGTAGGGGGGAGAGACGGGGCTGGCGAA
AATATCGAGGACCTGGATTCGCCTTCGGGGCTCTCGATCGAAAGAAATTT
TTTCAGGAACCGCTCCTGCTCGGCGGCTATACGCCGCGGGGTGACTGTGG
GTGGCGCAGGCGAAGGGGCGTATTGCGGCTGCTGCTGCTCCTGCTGCTGC
TGATGGTGACTATACTGATGGTGATATTGATGGTGATGTTGATGGTATTG
TTGCTGATGCTGGTGGTACCGCCGCTGGGCCTCCGCTGGCGCTAAACCCC
GCGGAGGCGGGTGGTCAAGTTGATACTGTTGTTGAACATGATATTGGGTT
TGATGTTGAGGCTGCTGTCGTTGTTGATAAGTCATCGTCGGCACAGTTGA
CGTAGGAGTTCCTTGAAGCCTCGCCAGGTGATCTGCACCCGACGAACGGA
GCGGAACTGCGGCGGAAGCTCCAGGTCGGGGAAGCGGACAAGGCGACTCA
CTAACATAACTCACCGTTGGGAGCGGCTGGGCATCTTCCT
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Coding sequence (CDS) from alignment at F-distichus_contig97924:472..2161+

>mRNA_F-distichus_contig97924.19235.1 ID=mRNA_F-distichus_contig97924.19235.1|Name=mRNA_F-distichus_contig97924.19235.1|organism=Fucus distichus monoicous|type=CDS|length=2478bp|location=Sequence derived from alignment at F-distichus_contig97924:472..2161+ (Fucus distichus monoicous)
ATGTGTTGCATGTCCTGCCGCGGACGGAGAAAATGTAATCCTTCGGCGCT
GCACAACGACAAAAACAGGAGGGCGACCGCCAAAACGACACTACCTGTAG
TGGAATCAAACTGTCTGTATCTCCTTTCTACGTTGGAGCCCCCCGCCTGT
ATGATAAAACGACTGCGTTCACCATCTCTACCTACTGCAAGCTTTTTCTC
TCTAGAGCAAGAGCTGTTGACTAAAATCCTGTCGTTAGGCCTAAGACCAG
GATTGACAACTGACTTCTCCTGTACCACGCACACACCCTTGTACCTTGTT
TCAAACGCTTTTCATCGGCCAATTCATCACCCCAGCCTCAGCATCCTTTT
GATATCGTCCTCTGCTCGCTTTGCGGCGCTTCGGGCCTCCCCTTCTGTCC
TCGCGCATCCCTCCGCGAGTTGCGGCGGCGGAGGTGGCGTGTGTAACACC
TCATCTTCCACCATATCATCTCGACATTTGGTCACCGTCTCCTCCAGCAC
GAGGCCCCCGTCTCCCGCGGACACGTCGGAGCTGAGGGAGAGGTGCGAAA
GCGAAGGAATCGGGATATTCTTAGGATCTGGAGAATTCTGGAAGGACGAC
CACGCATATGCCGGAGTCGCGGGCGGCGATGGTGAAAGCACTTTCGACCG
TCCACCCCCGCGAGCCCCCCCTCCTCCTCCGCCGCCGCCGCCGCCGCCAC
CATTCCTTGTCCCGGCGCCTTTCCACCCTTTCTTCGACTCGCGGCTGCCG
ACTTCGTTGTGGCTTCGGGCCCCTCGACCTTTGCGTCCGTCTTTCTCGCG
GTTGCTCGCCTCTGTGTTCCTGCGGCCCGAGCTCGCCGACCTCTTGCGCG
GCTCTCGCTTAGGAGTCGATGATGTCGTGGCGCTATCCTCGGTACCGCCA
CCACTCCCGCCTCCACCACGAGTCGGCCCGCCGCGTGGGCCTTTACCTTT
TCCTCTATCGTTTGCCCGACTTGCACTGCTCCGGCCATCACCCTCACCGG
CTCCTACGCTTTCGCTGGCAGCCGGCGTCGACATCGCTGCCGAGGTCGGC
AGAGACGGGGTAGGGGGGAGAGACGGGGCTGGCGAAAATATCGAGGACCT
GGATTCGCCTTCGGGGCTCTCGATCGAAAGAAATTTTTTCAGGAACCGCT
CCTGCTCGGCGGCTATACGCCGCGGGGTGACTGTGGGTGGCGCAGGCGAA
GGGGCGTATTGCGGCTGCTGCTGCTCCTGCTGCTGCTGAATGTGTTGCAT
GTCCTGCCGCGGACGGAGAAAATGTAATCCTTCGGCGCTGCACAACGACA
AAAACAGGAGGGCGACCGCCAAAACGACACTACCTGTAGTGGAATCAAAC
TGTCTGTATCTCCTTTCTACGTTGGAGCCCCCCGCCTGTATGATAAAACG
ACTGCGTTCACCATCTCTACCTACTGCAAGCTTTTTCTCTCTAGAGCAAG
AGCTGTTGACTAAAATCCTGTCGTTAGGCCTAAGACCAGGATTGACAACT
GACTTCTCCTGTACCACGCACACACCCTTGTACCTTGTTTCAAACGCTTT
TCATCGGCCAATTCATCACCCCAGCCTCAGCATCCTTTTGATATCGTCCT
CTGCTCGCTTTGCGGCGCTTCGGGCCTCCCCTTCTGTCCTCGCGCATCCC
TCCGCGAGTTGCGGCGGCGGAGGTGGCGTGTGTAACACCTCATCTTCCAC
CATATCATCTCGACATTTGGTCACCGTCTCCTCCAGCACGAGGCCCCCGT
CTCCCGCGGACACGTCGGAGCTGAGGGAGAGGTGCGAAAGCGAAGGAATC
GGGATATTCTTAGGATCTGGAGAATTCTGGAAGGACGACCACGCATATGC
CGGAGTCGCGGGCGGCGATGGTGAAAGCACTTTCGACCGTCCACCCCCGC
GAGCCCCCCCTCCTCCTCCGCCGCCGCCGCCGCCGCCACCATTCCTTGTC
CCGGCGCCTTTCCACCCTTTCTTCGACTCGCGGCTGCCGACTTCGTTGTG
GCTTCGGGCCCCTCGACCTTTGCGTCCGTCTTTCTCGCGGTTGCTCGCCT
CTGTGTTCCTGCGGCCCGAGCTCGCCGACCTCTTGCGCGGCTCTCGCTTA
GGAGTCGATGATGTCGTGGCGCTATCCTCGGTACCGCCACCACTCCCGCC
TCCACCACGAGTCGGCCCGCCGCGTGGGCCTTTACCTTTTCCTCTATCGT
TTGCCCGACTTGCACTGCTCCGGCCATCACCCTCACCGGCTCCTACGCTT
TCGCTGGCAGCCGGCGTCGACATCGCTGCCGAGGTCGGCAGAGACGGGGT
AGGGGGGAGAGACGGGGCTGGCGAAAATATCGAGGACCTGGATTCGCCTT
CGGGGCTCTCGATCGAAAGAAATTTTTTCAGGAACCGCTCCTGCTCGGCG
GCTATACGCCGCGGGGTGACTGTGGGTGGCGCAGGCGAAGGGGCGTATTG
CGGCTGCTGCTGCTCCTGCTGCTGCTGA
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