mRNA_F-distichus_contig97922.19234.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97922.19234.1
Unique NamemRNA_F-distichus_contig97922.19234.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97922.19234.1 vs. uniprot
Match: D7FTT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.890e-39
Identity = 93/173 (53.76%), Postives = 113/173 (65.32%), Query Frame = 1 
Query:    1 LRKAEEEHEALVLQAGEEARYRLCLARTRGECLAALENFIPALRKRLFMAVDVIGPVRELKALRGGGGSGRNRTGASAA----------------------------IADGQAAAEA-DLETREIELWEKARKQILIEKCDAFVKVTALTRLVVALYTFNALALMLHVQLHIL 432
            L++AE+EH A+++QAG +AR R C++RTRGEC+AAL NF+PALRKRLF+AVDV GPVRELKALR G        GA+A                             +ADG AAAEA DL++RE+ELWE+             VKVTALTRLVV+LY FNALALMLH+QLHIL
Sbjct:   43 LKEAEDEHAAMLVQAGHDARRRQCMSRTRGECVAALANFLPALRKRLFLAVDVTGPVRELKALRTG------LAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADGSAAAEAEDLQSREVELWEQ-------------VKVTALTRLVVSLYAFNALALMLHMQLHIL 196
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BLAST of mRNA_F-distichus_contig97922.19234.1 vs. uniprot
Match: A0A6H5L882_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L882_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 8.060e-39
Identity = 97/176 (55.11%), Postives = 116/176 (65.91%), Query Frame = 1 
Query:    1 LRKAEEEHEALVLQAGEEARYRLCLARTRGECLAALENFIPALRKRLFMAVDVIGPVRELKALRGGGGSGRNRTGASA-----------------------------AIADGQAAAEA-DLETREIELWEKARKQILIEKCDAFVKVTALTRLVVALYTFNALALMLHVQLHILGE 438
            LR+AE+EH A+++QAG +AR R C++RTRGEC+AAL NF+PALRKRLF+AVDV GPVRELKALR G       TGA+A                             A+ADG AAAEA DL++RE+ELWE+             VKVTALTRLVV+LY FNALALMLH+QLHILG 
Sbjct:   43 LREAEDEHAAMLVQAGRDARRRQCMSRTRGECVAALANFLPALRKRLFLAVDVTGPVRELKALRTG------MTGATAXXXXXXXXXXGGXXXXXXXXXXXXXXXXXAVADGSAAAEAEDLQSREVELWEQ-------------VKVTALTRLVVSLYAFNALALMLHMQLHILGR 199
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97922.19234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTT6_ECTSI1.890e-3953.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L882_9PHAE8.060e-3955.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97922contigF-distichus_contig97922:268..1795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size450
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97922.19234.1prot_F-distichus_contig97922.19234.1Fucus distichus monoicouspolypeptideF-distichus_contig97922 268..1795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.3147664-CDS-F-distichus_contig97922:267..3751622931158.3147664-CDS-F-distichus_contig97922:267..375Fucus distichus monoicousCDSF-distichus_contig97922 268..375 -
1690886183.4573884-CDS-F-distichus_contig97922:267..3751690886183.4573884-CDS-F-distichus_contig97922:267..375Fucus distichus monoicousCDSF-distichus_contig97922 268..375 -
1622931158.3356977-CDS-F-distichus_contig97922:1206..13801622931158.3356977-CDS-F-distichus_contig97922:1206..1380Fucus distichus monoicousCDSF-distichus_contig97922 1207..1380 -
1690886183.4681249-CDS-F-distichus_contig97922:1206..13801690886183.4681249-CDS-F-distichus_contig97922:1206..1380Fucus distichus monoicousCDSF-distichus_contig97922 1207..1380 -
1622931158.356753-CDS-F-distichus_contig97922:1627..17951622931158.356753-CDS-F-distichus_contig97922:1627..1795Fucus distichus monoicousCDSF-distichus_contig97922 1628..1795 -
1690886183.4789667-CDS-F-distichus_contig97922:1627..17951690886183.4789667-CDS-F-distichus_contig97922:1627..1795Fucus distichus monoicousCDSF-distichus_contig97922 1628..1795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97922.19234.1

>prot_F-distichus_contig97922.19234.1 ID=prot_F-distichus_contig97922.19234.1|Name=mRNA_F-distichus_contig97922.19234.1|organism=Fucus distichus monoicous|type=polypeptide|length=150bp
LRKAEEEHEALVLQAGEEARYRLCLARTRGECLAALENFIPALRKRLFMA
VDVIGPVRELKALRGGGGSGRNRTGASAAIADGQAAAEADLETREIELWE
KARKQILIEKCDAFVKVTALTRLVVALYTFNALALMLHVQLHILGESPK*
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mRNA from alignment at F-distichus_contig97922:268..1795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97922.19234.1 ID=mRNA_F-distichus_contig97922.19234.1|Name=mRNA_F-distichus_contig97922.19234.1|organism=Fucus distichus monoicous|type=mRNA|length=1528bp|location=Sequence derived from alignment at F-distichus_contig97922:268..1795- (Fucus distichus monoicous)
CTCCGAAAGGCCGAGGAGGAACACGAGGCACTCGTGCTACAGGCGGGCGA
GGAGGCCCGCTACCGGCTCTGCCTCGCCAGAACGCGGGGCGAATGTCTGG
CGGCGCTGGAAAACTTCATCCCCGCGCTACGAAAACGCCTCTTTATGGCG
GTGGACGTGATCGGGCCGGTGAGAAGCGCTATATATATATATATTTCTAC
ACCCGAAAAATCTCGGAGCGTCAAGCCGTCTGCGCTACGTTATGATATTC
AACGACGCAGTTGTTGTCGCAGCGGGTGATGACTGCCGCAGCTTCCCGTT
CCCATCTTCTCTCCAGTGAGCGATCGGATCTCCTCTCGGTAGTAACGGTT
TTCCAAACAGTCCGTCGTCGTCTCCGGGCCGGGGAACGTGGGGACATGTG
CCGTGAGTCGCGCAGGTACGAGAGCTCAAGGCTCTCAGGGGAGGCGGAGG
GAGCGGGAGGAACCGCACTGGCGCAAGCGCGGCGATCGCGGATGGCCAAG
CGGCGGCAGAGGCGGACTTGGAGACGCGTGAGATCGAACTTTGGGAGAAG
GCAAGAAAACAAATCCTTATAGAGAAGTGTGATGCGTTTGTCGTGCCTTG
TTGGTGACGAATGACGCAACGTTTGTAAAAAAAGTCGTCACCTGAGTAGT
CTACTAATAGATGAGTGGCTAGAAGGTAACCTAGGAGTTCGATTCTTCCC
AACGCACGGAATCTTGGAGTTCAATTCTCATCGCGATTGATTATCATTTG
TATTTTTTTTTCCCCTTTTGTGTTCCGTACGTGGCAGAAAGCTTGAAAAT
GTAATAAAAAACAAGTTCAACCAGTGACTAACGTGACGAAGCGCACTGCT
GTAAGAATTCTGGAGATTGTATTACGATATAAAGTAACAGGAATAAGCCG
GGGAAATATGGGATTATACCCTAGAGGCTTGGCAGAAGAGATGCGCAACT
TTCCAGTATTAGAGGCTGTAGTAGTAACCTCGCATGGTGGTTGGACTCCA
TCGCCAGTAGGAAGTGGATAACCTCCCCGCCCCCCCTGAGAAGTACCGTA
TCGGAGACTTCCGCCTACACTGTTTGGAGGTAGCGCTCCGTGATTTTTCT
GGTCGTTTACCCTGGTATCAACACAATCTCACAGCACGTTTTCATCTCAA
CACCTGAAGAGGCGTTATTGCGGGCGCAACTCCTGAGGGAGGGGAGTGGG
GGGGTAATCGTGGCATGGACCGTCTTGGAGAAATCGGGTGCGAATTTTTC
CACGCCTGATAATGTAAAACATATCCTACGGTAGAGGAATCCCCTCCAGC
TATTTTTGTGGCGTCAGAAACGTAGGACCGGGGTTCTTGCTCTTCTGTCC
GCGACCTCCTACCCCCCGACCCCCTCCATTGGCACCCTTCACACAACCAA
CTCCTGGTGTTGTTCTGCAGGTGAAGGTGACGGCCCTGACGAGGCTGGTT
GTGGCACTGTACACGTTCAATGCGCTCGCGCTCATGCTTCACGTCCAGCT
CCATATCCTCGGTGAGAGTCCAAAGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig97922:268..1795-

>mRNA_F-distichus_contig97922.19234.1 ID=mRNA_F-distichus_contig97922.19234.1|Name=mRNA_F-distichus_contig97922.19234.1|organism=Fucus distichus monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at F-distichus_contig97922:268..1795- (Fucus distichus monoicous)
CTCCGAAAGGCCGAGGAGGAACACGAGGCACTCGTGCTACAGGCGGGCGA
GGAGGCCCGCTACCGGCTCTGCCTCGCCAGAACGCGGGGCGAATGTCTGG
CGGCGCTGGAAAACTTCATCCCCGCGCTACGAAAACGCCTCTTTATGGCG
GTGGACGTGATCGGGCCGCTCCGAAAGGCCGAGGAGGAACACGAGGCACT
CGTGCTACAGGCGGGCGAGGAGGCCCGCTACCGGCTCTGCCTCGCCAGAA
CGCGGGGCGAATGTCTGGCGGCGCTGGAAAACTTCATCCCCGCGCTACGA
AAACGCCTCTTTATGGCGGTGGACGTGATCGGGCCGGTACGAGAGCTCAA
GGCTCTCAGGGGAGGCGGAGGGAGCGGGAGGAACCGCACTGGCGCAAGCG
CGGCGATCGCGGATGGCCAAGCGGCGGCAGAGGCGGACTTGGAGACGCGT
GAGATCGAACTTTGGGAGAAGGCAAGAAAACAAATCCTTATAGAGAAGTG
TGATGCGTTTGTACGAGAGCTCAAGGCTCTCAGGGGAGGCGGAGGGAGCG
GGAGGAACCGCACTGGCGCAAGCGCGGCGATCGCGGATGGCCAAGCGGCG
GCAGAGGCGGACTTGGAGACGCGTGAGATCGAACTTTGGGAGAAGGCAAG
AAAACAAATCCTTATAGAGAAGTGTGATGCGTTTGTGAAGGTGACGGCCC
TGACGAGGCTGGTTGTGGCACTGTACACGTTCAATGCGCTCGCGCTCATG
CTTCACGTCCAGCTCCATATCCTCGGTGAGAGTCCAAAGTGAGTGAAGGT
GACGGCCCTGACGAGGCTGGTTGTGGCACTGTACACGTTCAATGCGCTCG
CGCTCATGCTTCACGTCCAGCTCCATATCCTCGGTGAGAGTCCAAAGTGA
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