mRNA_F-distichus_contig97277.19183.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97277.19183.1
Unique NamemRNA_F-distichus_contig97277.19183.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: D8LSH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.830e-28
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFILPIAAALPGRDLGTIENTMDSIVMVSQNRAIQV 216
            +VQGSQY+FEEKVMAV  APPLVVIGMEG+WGT IML I PIAAALPGRDLG+IENT DS  MVSQ+  IQ+
Sbjct:  193 IVQGSQYIFEEKVMAVDNAPPLVVIGMEGLWGTLIMLVIFPIAAALPGRDLGSIENTQDSFYMVSQSNTIQL 264          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: A0A6H5KUQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.260e-27
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   10 GSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFILPIAAALPGRDLGTIENTMDSIVMVSQNRAIQV 216
            GSQY+FEEKVMAV  APPLVVIGMEG+WGT IML I PIAAALPGRDLG+IENT DS  MVSQ+ AIQ+
Sbjct:  194 GSQYIFEEKVMAVDNAPPLVVIGMEGLWGTLIMLVIFPIAAALPGRDLGSIENTQDSFYMVSQSNAIQL 262          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: A0A836CAF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.690e-20
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFILPIAAALPGRDLGTIENTMDSIVMVSQNRAIQ 213
            VVQGSQY+FEEKVMAV  APPLVVIGMEG+WG+ IML + PI    PG D G+IENT DSI MV  +  IQ
Sbjct:  193 VVQGSQYIFEEKVMAVDDAPPLVVIGMEGLWGSVIMLALFPILYYTPGADKGSIENTWDSIDMVRNSAPIQ 263          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: A0A7S3M124_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M124_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.930e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFIL-PIAAALPGRDLGTIENTMDSIVMVSQN 201
            + QG QYVFEEKVM+V  APPLVVIG EG+WG A+ LF++ P+A   PG+D G+ E+  D++ M+  N
Sbjct:  213 IAQGVQYVFEEKVMSVDNAPPLVVIGCEGLWGAALSLFVVYPLAYLAPGQDNGSFEDPFDALTMIGNN 280          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: A0A1V9Y6X2_9STRA (Drug/Metabolite Transporter (DMT) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6X2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.190e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFIL-PIAAALPGRDLGTIENTMDSIVMVSQNRAIQ 213
            ++  SQYV EE VM     PP++VIG+EGVWGT IMLFI+ PIA  LPG D G  E+ +DSIVM++ +  IQ
Sbjct:  160 LITSSQYVLEETVMRKKDTPPMMVIGLEGVWGTLIMLFIVFPIAYMLPGADNGHAEDVIDSIVMITNSSTIQ 231          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: A0A7S3UY76_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY76_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 2.020e-14
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFIL-PIAAALPGRDLGTIENTMDSIVMVSQNRAIQ 213
            VV G QYVFEEKVM     PPLVVIGMEGVWGT + +F L P+A  +PG D G++EN  D+ VM   + AIQ
Sbjct:  194 VVCGMQYVFEEKVMTNDKCPPLVVIGMEGVWGTLMTVFFLFPVAYYIPGTDDGSLENPYDTWVMWQNSPAIQ 265          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: A0A7J6U3C0_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6U3C0_PEROL)

HSP 1 Score: 72.4 bits (176), Expect = 8.260e-14
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFI-LPIAAALPGRDLGTIENTMDSIVMVSQNRAIQ 213
            ++Q  Q V EEK M     PP +V+GMEG+WGT IM+FI LPI   +PG D G++ENT+DS+V+   +  +Q
Sbjct:    9 IIQSLQLVTEEKFMKNINIPPFLVVGMEGIWGTLIMIFITLPIIYYIPGNDSGSLENTLDSVVLYENSPEMQ 80          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: K8YYA0_NANGC (Drug metabolite transporter superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYA0_NANGC)

HSP 1 Score: 73.2 bits (178), Expect = 3.110e-13
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFIL-PIAAALPGRDLG-TIENTMDSIVMVSQNRAIQ 213
            +VQG+QYVFEEKVM V   PP+V++G+EG WG  +ML ++ P A  LPG D G ++EN  DS+ MV  +  +Q
Sbjct:  167 LVQGTQYVFEEKVMTVESLPPMVLVGLEGFWGMILMLLVVFPSAYYLPGTDEGGSMENVFDSLAMVRNSAPLQ 239          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: C5KA08_PERM5 (Uncharacterized protein n=5 Tax=Perkinsus TaxID=28000 RepID=C5KA08_PERM5)

HSP 1 Score: 73.2 bits (178), Expect = 3.210e-13
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFI-LPIAAALPGRDLGTIENTMDSIVMVSQNRAIQ 213
            ++Q  Q V EEK M     PP +V+GMEG+WGT IM+FI LPI   +PG D G++ENT+DS+V+   +  +Q
Sbjct:  208 IIQSLQLVTEEKFMKSINIPPFLVVGMEGIWGTLIMIFIALPIIYYIPGNDSGSLENTLDSVVLYENSSEMQ 279          
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Match: W7UAT2_9STRA (Drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAT2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.560e-13
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFIL-PIAAALPGRDLG-TIENTMDSIVMVSQNRAIQ 213
            +VQG+QYVFEEKVM V   PP+V++G+EG WG  +ML ++ P A  LPG D G ++EN  DS+ MV  +  +Q
Sbjct:  142 LVQGTQYVFEEKVMTVESLPPMVLVGLEGFWGMILMLLVVFPSAYYLPGTDEGGSMENVFDSLAMVRNSAPLQ 214          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97277.19183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH0_ECTSI1.830e-2877.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUQ5_9PHAE5.260e-2779.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAF8_9STRA1.690e-2067.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3M124_9STRA2.930e-1554.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1V9Y6X2_9STRA8.190e-1555.56Drug/Metabolite Transporter (DMT) Superfamily n=1 ... [more]
A0A7S3UY76_HETAK2.020e-1458.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7J6U3C0_PEROL8.260e-1448.61Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
K8YYA0_NANGC3.110e-1350.68Drug metabolite transporter superfamily n=2 Tax=Mo... [more]
C5KA08_PERM53.210e-1348.61Uncharacterized protein n=5 Tax=Perkinsus TaxID=28... [more]
W7UAT2_9STRA3.560e-1350.68Drug metabolite transporter superfamily n=1 Tax=Na... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97277contigF-distichus_contig97277:1599..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue3.6e-23
Seed eggNOG ortholog2880.D8LSH0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
EggNOG OGsCOG0697@1,KOG3912@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.0497909-CDS-F-distichus_contig97277:1598..18651622931153.0497909-CDS-F-distichus_contig97277:1598..1865Fucus distichus monoicousCDSF-distichus_contig97277 1599..1865 -
1690886181.1872227-CDS-F-distichus_contig97277:1598..18651690886181.1872227-CDS-F-distichus_contig97277:1598..1865Fucus distichus monoicousCDSF-distichus_contig97277 1599..1865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97277.19183.1prot_F-distichus_contig97277.19183.1Fucus distichus monoicouspolypeptideF-distichus_contig97277 1599..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97277.19183.1

>prot_F-distichus_contig97277.19183.1 ID=prot_F-distichus_contig97277.19183.1|Name=mRNA_F-distichus_contig97277.19183.1|organism=Fucus distichus monoicous|type=polypeptide|length=89bp
VVQGSQYVFEEKVMAVHGAPPLVVIGMEGVWGTAIMLFILPIAAALPGRD
LGTIENTMDSIVMVSQNRAIQVRNGTSCVERCIIFDFP*
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mRNA from alignment at F-distichus_contig97277:1599..1865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97277.19183.1 ID=mRNA_F-distichus_contig97277.19183.1|Name=mRNA_F-distichus_contig97277.19183.1|organism=Fucus distichus monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at F-distichus_contig97277:1599..1865- (Fucus distichus monoicous)
GTGGTACAGGGCAGTCAGTACGTCTTTGAGGAGAAGGTCATGGCCGTTCA CGGCGCACCTCCGCTAGTGGTGATAGGCATGGAGGGAGTCTGGGGAACAG CGATCATGCTCTTCATCCTCCCTATTGCTGCCGCGCTTCCTGGGCGGGAT CTTGGGACGATCGAGAACACCATGGACTCGATCGTCATGGTTTCACAGAA CCGGGCAATACAGGTACGGAACGGAACGTCATGTGTTGAACGCTGTATTA TCTTTGACTTTCCTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig97277:1599..1865-

>mRNA_F-distichus_contig97277.19183.1 ID=mRNA_F-distichus_contig97277.19183.1|Name=mRNA_F-distichus_contig97277.19183.1|organism=Fucus distichus monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at F-distichus_contig97277:1599..1865- (Fucus distichus monoicous)
GTGGTACAGGGCAGTCAGTACGTCTTTGAGGAGAAGGTCATGGCCGTTCA
CGGCGCACCTCCGCTAGTGGTGATAGGCATGGAGGGAGTCTGGGGAACAG
CGATCATGCTCTTCATCCTCCCTATTGCTGCCGCGCTTCCTGGGCGGGAT
CTTGGGACGATCGAGAACACCATGGACTCGATCGTCATGGTTTCACAGAA
CCGGGCAATACAGGTACGGAACGGAACGTCATGTGTTGAACGCTGTATTA
TCTTTGACTTTCCTTGAGTGGTACAGGGCAGTCAGTACGTCTTTGAGGAG
AAGGTCATGGCCGTTCACGGCGCACCTCCGCTAGTGGTGATAGGCATGGA
GGGAGTCTGGGGAACAGCGATCATGCTCTTCATCCTCCCTATTGCTGCCG
CGCTTCCTGGGCGGGATCTTGGGACGATCGAGAACACCATGGACTCGATC
GTCATGGTTTCACAGAACCGGGCAATACAGGTACGGAACGGAACGTCATG
TGTTGAACGCTGTATTATCTTTGACTTTCCTTGA
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