mRNA_F-distichus_contig97232.19179.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97232.19179.1
Unique NamemRNA_F-distichus_contig97232.19179.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97232.19179.1 vs. uniprot
Match: D8LIM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-10
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  142 EVGGRSPKTGDCLEQVRASRRMGLTHSLDSPRAHESEPAKSDLPGRESPTGELPRPRSASPKR 330
            ++GGRSP+  D  EQ RASRR+GLTHSL SPRA   EPAK +LP R + + +LPRPRS SP R
Sbjct:   13 DIGGRSPRAVDGREQDRASRRLGLTHSLTSPRA--PEPAKPELPARPN-SDDLPRPRSLSPPR 72
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97232.19179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM2_ECTSI1.680e-1061.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97232contigF-distichus_contig97232:1033..1979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.3656745-CDS-F-distichus_contig97232:1032..13101622931152.3656745-CDS-F-distichus_contig97232:1032..1310Fucus distichus monoicousCDSF-distichus_contig97232 1033..1310 +
1690886180.8700411-CDS-F-distichus_contig97232:1032..13101690886180.8700411-CDS-F-distichus_contig97232:1032..1310Fucus distichus monoicousCDSF-distichus_contig97232 1033..1310 +
1622931152.382572-CDS-F-distichus_contig97232:1925..19771622931152.382572-CDS-F-distichus_contig97232:1925..1977Fucus distichus monoicousCDSF-distichus_contig97232 1926..1977 +
1690886180.8934293-CDS-F-distichus_contig97232:1925..19771690886180.8934293-CDS-F-distichus_contig97232:1925..1977Fucus distichus monoicousCDSF-distichus_contig97232 1926..1977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97232.19179.1prot_F-distichus_contig97232.19179.1Fucus distichus monoicouspolypeptideF-distichus_contig97232 1033..1977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97232.19179.1

>prot_F-distichus_contig97232.19179.1 ID=prot_F-distichus_contig97232.19179.1|Name=mRNA_F-distichus_contig97232.19179.1|organism=Fucus distichus monoicous|type=polypeptide|length=110bp
CLRFCKRKGDAINTSVATPKLSWRKSQEQDRVVVPAIMPRLGFAEEIEVG
GRSPKTGDCLEQVRASRRMGLTHSLDSPRAHESEPAKSDLPGRESPTGEL
PRPRSASPKR
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mRNA from alignment at F-distichus_contig97232:1033..1979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97232.19179.1 ID=mRNA_F-distichus_contig97232.19179.1|Name=mRNA_F-distichus_contig97232.19179.1|organism=Fucus distichus monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at F-distichus_contig97232:1033..1979+ (Fucus distichus monoicous)
TGTCTTCGCTTCTGTAAAAGGAAAGGCGACGCCATAAATACCAGCGTCGC
CACACCAAAACTTTCCTGGAGGAAATCACAGGAACAGGATAGGGTTGTGG
TGCCTGCGATCATGCCTCGCTTGGGTTTCGCCGAGGAAATTGAAGTCGGT
GGACGCTCGCCAAAGACAGGGGACTGTCTAGAGCAAGTTCGCGCTAGCCG
ACGGATGGGGCTCACTCATTCCCTTGACTCACCTCGAGCGCACGAGTCTG
AACCCGCGAAATCTGATCTACCAGGAAGGTGAGAGATCTATGAAGGGGCA
AATACCTGACAGACGCTCTCGTCGATTCCTGTGGTGTGCTGTCCCGTTGC
TGTCTCGTGCGTAGGCTAATTGGAGACCAACCAATTCACAAGCGTGAGGT
TTTCATGGGACAAGTTCGACAACCGCTGTCCCAAATTCCCTTTTTCGAAA
TTTTGAAACTTTCGACACGTAAGGGAAGAGAGGAAAGAAGAGCCCCGGTA
CGTACTGCCCTTGTACAAAACATACTGAGCAGCTCTACAGAGTCGGATTA
CGAGATTCAAGATTCACATTTTATCCTGGCCCGGAGCCGTGCGTCATGGG
GATCGCTACCTGCCTGTCTTTGTGTGTTCAATCGACGTCGGTGTGGTATC
TCCCTGTAGTCTCTTCACTGCTGTCTGTTATTGTTGTGATGCTGTAAAAA
CGAAACGCGTCTCTCTGCCGGGGTAGGCCTCGCTCATGTCTCGAGAAAAA
GTGTTTCTCCCACCTGCAGTGTGCACGGGTATCGTACAACGTACCAGGTA
TAACAGGAGTACATGTACAACAGTATTAATAGTCGAGCGGTCAGTTTTTT
GTTGCTGTGCCGCCCTTTTCACCCCACGTACGTCCCGTCGCAGGGAATCG
CCCACGGGAGAGCTTCCTAGACCCAGAAGCGCCTCCCCCAAGAGGAA
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Coding sequence (CDS) from alignment at F-distichus_contig97232:1033..1979+

>mRNA_F-distichus_contig97232.19179.1 ID=mRNA_F-distichus_contig97232.19179.1|Name=mRNA_F-distichus_contig97232.19179.1|organism=Fucus distichus monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at F-distichus_contig97232:1033..1979+ (Fucus distichus monoicous)
TGTCTTCGCTTCTGTAAAAGGAAAGGCGACGCCATAAATACCAGCGTCGC
CACACCAAAACTTTCCTGGAGGAAATCACAGGAACAGGATAGGGTTGTGG
TGCCTGCGATCATGCCTCGCTTGGGTTTCGCCGAGGAAATTGAAGTCGGT
GGACGCTCGCCAAAGACAGGGGACTGTCTAGAGCAAGTTCGCGCTAGCCG
ACGGATGGGGCTCACTCATTCCCTTGACTCACCTCGAGCGCACGAGTCTG
AACCCGCGAAATCTGATCTACCAGGAAGTGTCTTCGCTTCTGTAAAAGGA
AAGGCGACGCCATAAATACCAGCGTCGCCACACCAAAACTTTCCTGGAGG
AAATCACAGGAACAGGATAGGGTTGTGGTGCCTGCGATCATGCCTCGCTT
GGGTTTCGCCGAGGAAATTGAAGTCGGTGGACGCTCGCCAAAGACAGGGG
ACTGTCTAGAGCAAGTTCGCGCTAGCCGACGGATGGGGCTCACTCATTCC
CTTGACTCACCTCGAGCGCACGAGTCTGAACCCGCGAAATCTGATCTACC
AGGAAGGGAATCGCCCACGGGAGAGCTTCCTAGACCCAGAAGCGCCTCCC
CCAAGAGGGGAATCGCCCACGGGAGAGCTTCCTAGACCCAGAAGCGCCTC
CCCCAAGAGG
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