mRNA_F-distichus_contig97212.19177.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97212.19177.1
Unique NamemRNA_F-distichus_contig97212.19177.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (635), Expect = 3.980e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 248 bits (632), Expect = 1.390e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 247 bits (631), Expect = 1.620e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.820e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 249 bits (635), Expect = 4.620e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 9.370e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: B0X778_CULQU (Histone H3.3 type 2 n=4 Tax=Culex pipiens complex TaxID=518105 RepID=B0X778_CULQU)

HSP 1 Score: 246 bits (628), Expect = 9.720e-82
Identity = 134/143 (93.71%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:    1 SSLTLGPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            SS T   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   16 SSTTAKKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 158
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: A0A8C5WQ19_LATLA (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C5WQ19_LATLA)

HSP 1 Score: 245 bits (626), Expect = 1.000e-81
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   16 GPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            G MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 GKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: A0A672K8D0_SINGR (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A672K8D0_SINGR)

HSP 1 Score: 245 bits (626), Expect = 1.000e-81
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   16 GPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            G MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 GSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
[Close]
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Match: A0A8C1ET08_CYPCA (Histone H3 n=4 Tax=Euteleostomi TaxID=117571 RepID=A0A8C1ET08_CYPCA)

HSP 1 Score: 245 bits (626), Expect = 1.000e-81
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   16 GPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            G MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 GTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97212.19177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA3.980e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK1.390e-8298.53Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO1.620e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.820e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC4.620e-8299.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI9.370e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
B0X778_CULQU9.720e-8293.71Histone H3.3 type 2 n=4 Tax=Culex pipiens complex ... [more]
A0A8C5WQ19_LATLA1.000e-8195.65Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
A0A672K8D0_SINGR1.000e-8195.65Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
A0A8C1ET08_CYPCA1.000e-8195.65Histone H3 n=4 Tax=Euteleostomi TaxID=117571 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97212contigF-distichus_contig97212:528..959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.9e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size432
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.2202961-UTR-F-distichus_contig97212:527..5481622931152.2202961-UTR-F-distichus_contig97212:527..548Fucus distichus monoicousUTRF-distichus_contig97212 528..548 +
1690886180.7953117-UTR-F-distichus_contig97212:527..5481690886180.7953117-UTR-F-distichus_contig97212:527..548Fucus distichus monoicousUTRF-distichus_contig97212 528..548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.2342799-CDS-F-distichus_contig97212:548..9591622931152.2342799-CDS-F-distichus_contig97212:548..959Fucus distichus monoicousCDSF-distichus_contig97212 549..959 +
1690886180.812866-CDS-F-distichus_contig97212:548..9591690886180.812866-CDS-F-distichus_contig97212:548..959Fucus distichus monoicousCDSF-distichus_contig97212 549..959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97212.19177.1prot_F-distichus_contig97212.19177.1Fucus distichus monoicouspolypeptideF-distichus_contig97212 549..959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97212.19177.1

>prot_F-distichus_contig97212.19177.1 ID=prot_F-distichus_contig97212.19177.1|Name=mRNA_F-distichus_contig97212.19177.1|organism=Fucus distichus monoicous|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
back to top

mRNA from alignment at F-distichus_contig97212:528..959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97212.19177.1 ID=mRNA_F-distichus_contig97212.19177.1|Name=mRNA_F-distichus_contig97212.19177.1|organism=Fucus distichus monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at F-distichus_contig97212:528..959+ (Fucus distichus monoicous)
TCTTCCTTGACCCTAGGACCAATGGCTCGTACCAAGCAAACCGCTCGTAA
GTCTACCGGAGGCAAGGCTCCACGCAAGCAGTTGGCCACAAAGGCTGCCC
GCAAATCCGCGCCCGCTACCGGTGGTGTGAAGAAGCCTCACCGCTACAGG
CCAGGAACAGTCGCCCTGCGCGAGATCCGCCGTTACCAGAAGTCTACCGA
ACTTTTGATCCGTAAGCTGCCTTTCCAGCGCCTTGTGCGCGAGATCGCCC
AGGATTTCAAGAGTGATCTGCGCTTCCAGGGCTCTGCCGTTCTGGCCCTT
CAGGAGGCCGCCGAGGCCTACCTTGTAGGTTTGTTCGAAGACACCAACCT
GTGCGCGATCCACGCGAAGCGCGTTACCATCATGCCCAAGGATATCCAGC
TGGCTAGGCGCATCCGCGGAGAGCGCTCGTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig97212:528..959+

>mRNA_F-distichus_contig97212.19177.1 ID=mRNA_F-distichus_contig97212.19177.1|Name=mRNA_F-distichus_contig97212.19177.1|organism=Fucus distichus monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at F-distichus_contig97212:528..959+ (Fucus distichus monoicous)
ATGGCTCGTACCAAGCAAACCGCTCGTAAGTCTACCGGAGGCAAGGCTCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCCGCTACCG
GTGGTGTGAAGAAGCCTCACCGCTACAGGCCAGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATCCGTAAGCTGCC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAC
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCGCATCCGCGGAG
AGCGCTCGTGAATGGCTCGTACCAAGCAAACCGCTCGTAAGTCTACCGGA
GGCAAGGCTCCACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGC
GCCCGCTACCGGTGGTGTGAAGAAGCCTCACCGCTACAGGCCAGGAACAG
TCGCCCTGCGCGAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATC
CGTAAGCTGCCTTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAA
GAGTGATCTGCGCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCG
CCGAGGCCTACCTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATC
CACGCGAAGCGCGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCG
CATCCGCGGAGAGCGCTCGTGA
back to top