mRNA_F-distichus_contig97074.19160.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97074.19160.1
Unique NamemRNA_F-distichus_contig97074.19160.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97074.19160.1 vs. uniprot
Match: A0A6H5KLY0_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY0_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.440e-85
Identity = 190/289 (65.74%), Postives = 205/289 (70.93%), Query Frame = 1 
Query:    1 ISEALQLMAQAVRFLDVRDMPPAPPXXXXXXXXXXXXXXXXXXXXGEW------------------SGQPRPHISAELVRTLWPMLEAAPGRLGGSAEIIKQLFILVGKMLTSLRMVLAQQVHIPTLLKMIMDCYDERQYPCCLDVMTTAVEVYGGADEAIQHFRALLGRASARTFAA-------------------------------------LDTALRLAVACVGASDLERESARAVLVFLGQLAGRCGGQLDRYQGEVETALAPHGEVLTRLMFAALA-VSPARL 699
            ISEALQ +AQAVRFLDVRD P    XXXXXXXXXXXXXXXXXXXX                     +     HIS ELVRTLWPMLEA PGR+GGS E+++QLF+LVGK+LTSLRMVLA+QVHIPTLLKMIMD YDE QYPCCLD+MTTAVEVYG  DEA++HFRALLGRAS RTF                                       LDTALRLAVACVGA+DLERESARAVLVFLGQLAGRCGGQLDRY+GEVE ALAPHGE LTRLMFAALA  SP+ L
Sbjct:  786 ISEALQQLAQAVRFLDVRDTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQSQHISTELVRTLWPMLEAVPGRMGGSPEVMRQLFLLVGKLLTSLRMVLARQVHIPTLLKMIMDSYDEHQYPCCLDIMTTAVEVYGSTDEAMEHFRALLGRASTRTFTVVQAAARPGEVPQLVRSYFELLFRFLIFCPAGLLASTELDTALRLAVACVGAADLERESARAVLVFLGQLAGRCGGQLDRYKGEVEAALAPHGEALTRLMFAALAGASPSLL 1074
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BLAST of mRNA_F-distichus_contig97074.19160.1 vs. uniprot
Match: A0A835YMS8_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.040e-29
Identity = 84/216 (38.89%), Postives = 111/216 (51.39%), Query Frame = 1 
Query:  163 HISAELVRTLWPMLEAAPGRLGGSAEIIKQLFILVGKMLTSLRMVLAQQVHIPTLLKMIMDCYDERQYPCCLDVMTTAVEVYGGAD-EAIQHFRALLGRASARTFAA------------------------------------LDTALRLAVACV------GASDLERESARAVLVFLGQLAGRCGGQLDRYQGEVETALAPHGEVLTRLMFAALA 681
            H  AEL+++L P+++A  GR  GS E++ QLF+LVGK L+SLR + A Q HIP  L +++D      YPCCL+ M TAVEVY G   + ++HF  LL R  A TF                                      L T L LAVAC+        +  ERESARAV +F+G LA RC G+LD Y  +++  L   G  L RL+   LA
Sbjct:  757 HACAELLQSLRPLVDAVAGRCQGSEEVMAQLFLLVGKALSSLRSLPALQAHIPAFLNIMLD-----HYPCCLECMGTAVEVYSGESAQVVEHFGQLLARVCAETFTYFQGRHPGAEPQLVAAFFTLAYRYLLFAPAALLQGRDLATILDLAVACLDVGGGGSGTTQERESARAVAIFVGHLAQRCSGKLDAYSQQIDAVLVDRGGALVRLILVGLA 967
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97074.19160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLY0_9PHAE1.440e-8565.74Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YMS8_9STRA2.040e-2938.89Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97074contigF-distichus_contig97074:48..1688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue5.4e-76
Seed eggNOG ortholog2880.D8LBP4
Preferred nameIPO13
KEGG koko:K15436
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0008104,GO:0008134,GO:0008139,GO:0008150,GO:0008565,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0023051,GO:0023052,GO:0031074,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0035257,GO:0035258,GO:0035259,GO:0038023,GO:0040011,GO:0042277,GO:0042330,GO:0042331,GO:0042564,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0060089,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0098916,GO:0099177,GO:0099536,GO:0099537
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2022@1,KOG2022@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-27_003220.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons3
Model size699
Cds size678
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97074.19160.1prot_F-distichus_contig97074.19160.1Fucus distichus monoicouspolypeptideF-distichus_contig97074 69..1688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.307774-UTR-F-distichus_contig97074:47..681622931149.307774-UTR-F-distichus_contig97074:47..68Fucus distichus monoicousUTRF-distichus_contig97074 48..68 +
1690886179.6474016-UTR-F-distichus_contig97074:47..681690886179.6474016-UTR-F-distichus_contig97074:47..68Fucus distichus monoicousUTRF-distichus_contig97074 48..68 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.3324172-CDS-F-distichus_contig97074:68..3561622931149.3324172-CDS-F-distichus_contig97074:68..356Fucus distichus monoicousCDSF-distichus_contig97074 69..356 +
1690886179.6637084-CDS-F-distichus_contig97074:68..3561690886179.6637084-CDS-F-distichus_contig97074:68..356Fucus distichus monoicousCDSF-distichus_contig97074 69..356 +
1622931149.351693-CDS-F-distichus_contig97074:692..8631622931149.351693-CDS-F-distichus_contig97074:692..863Fucus distichus monoicousCDSF-distichus_contig97074 693..863 +
1690886179.674364-CDS-F-distichus_contig97074:692..8631690886179.674364-CDS-F-distichus_contig97074:692..863Fucus distichus monoicousCDSF-distichus_contig97074 693..863 +
1622931149.3674772-CDS-F-distichus_contig97074:1469..16881622931149.3674772-CDS-F-distichus_contig97074:1469..1688Fucus distichus monoicousCDSF-distichus_contig97074 1470..1688 +
1690886179.6847374-CDS-F-distichus_contig97074:1469..16881690886179.6847374-CDS-F-distichus_contig97074:1469..1688Fucus distichus monoicousCDSF-distichus_contig97074 1470..1688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97074.19160.1

>prot_F-distichus_contig97074.19160.1 ID=prot_F-distichus_contig97074.19160.1|Name=mRNA_F-distichus_contig97074.19160.1|organism=Fucus distichus monoicous|type=polypeptide|length=226bp
MAQAVRFLDVRDMPPAPPPGPSPRLPAAPGDGVGGGGAGEWSGQPRPHIS
AELVRTLWPMLEAAPGRLGGSAEIIKQLFILVGKMLTSLRMVLAQQVHIP
TLLKMIMDCYDERQYPCCLDVMTTAVEVYGGADEAIQHFRALLGRASART
FAALDTALRLAVACVGASDLERESARAVLVFLGQLAGRCGGQLDRYQGEV
ETALAPHGEVLTRLMFAALAVSPARL
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mRNA from alignment at F-distichus_contig97074:48..1688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97074.19160.1 ID=mRNA_F-distichus_contig97074.19160.1|Name=mRNA_F-distichus_contig97074.19160.1|organism=Fucus distichus monoicous|type=mRNA|length=1641bp|location=Sequence derived from alignment at F-distichus_contig97074:48..1688+ (Fucus distichus monoicous)
ATTTCTGAGGCATTGCAACTTATGGCTCAGGCGGTGCGGTTCTTGGATGT
ACGTGATATGCCCCCTGCTCCGCCACCCGGACCCTCACCGAGGCTTCCTG
CAGCTCCAGGCGATGGCGTCGGCGGAGGCGGGGCGGGGGAGTGGAGCGGC
CAGCCTCGGCCTCACATCTCGGCGGAGCTCGTACGCACGCTTTGGCCGAT
GCTCGAGGCGGCACCTGGGCGCCTGGGAGGCAGCGCGGAGATCATCAAGC
AATTGTTCATATTGGTGGGCAAGATGCTCACGTCGCTGAGGATGGTTCTA
GCGCAGCAGGTGAAGGAAAAGTATTCTTAAACCCAGGGGGGCGTATGCGG
TGAGGTGTGTGAAGCATAGTGGAAATGAGGAGGGAATTTTTTTTTTTCTT
TTTTTTTTCCACATTGCTTTGGTTTGATTGGTTCGACCGTATCAAACGCG
CAGTAAAACGAGGGGGATGAGATCCCCAAGCTTTGCCCTTGCCCTATCTA
TTAATTAGTAATATTGACCACAGTATTAACTGTTGTGGTCGGGGAGTTAA
ACGCCCGCGCGAGCGGAAACGGGTGGCGTTGTGAACGTGCTATGAAATAG
CGATACCAGTTTCTCCTTTGCTCTGTTGACTTTGGCGACGCGCAGGTCCA
CATCCCGACCCTCCTGAAGATGATCATGGACTGCTACGACGAGCGGCAGT
ACCCGTGCTGCCTGGACGTGATGACCACCGCCGTCGAGGTGTACGGAGGG
GCAGACGAGGCCATCCAACACTTCCGCGCTCTGCTCGGGCGAGCGTCGGC
GCGGACTTTCGCGGCGGTTCAGGTGGGAGCATACCACGTTTGAAGAGTGT
ACTCGAGCTTGTCTGGCTTCACCCCAAGGCCGGCCATGGTATTGCCGAGG
AAGGAAAGGAAAGCTCAACGATTTTCGTGCCGATGTTTGATTAGTCGTTG
GTCTTGTGTTGTGGGTTTGTTGGTCGGTTAAAGGCTAGCGTCTAAATATA
TGCGGTACGCAGAAACAGATTTTCCGGAGGCCCTGCCCGCCCATTGCGTT
GGTGTACAGTACTTGGGTCTCAATCGAAGTGGAGGAGGTTTCGCGAACGA
AGGAAGCGTCGTTTTTGACTCGAGAGACGTAGCGTGCGTGCCGAGAGCAG
GGAAAAACGATTCAAGTATTCAATATTTTACCCTGTGCGTGTTCCTTCCC
GGCCCGGACCCCTTTATCTAGGACTCGAAGAGTGACTCCTCGTCCCTTTA
TGCCCCCTTGCCTGCTCAACCCGAATGCCCTAATTCCATCGCCCGAACCG
TGGGGAATCAAATTTAGGCTGCTTCCCGGCCGGGAGAAATTCCTCAGCTG
GTCCGCGCGTACTACGAGCTTCTGTTCAGGTTCCTGCTCTTCTGCCCCGC
TGGGCTGCTGGGCTCCTCTGAGCTGGATACCGCCCTCCGCCTCGCCGTGG
CGTGTGTTGGGGCGTCCGACCTCGAGCGGGAATCGGCGCGGGCGGTGCTT
GTGTTTCTGGGGCAGCTGGCGGGTCGGTGTGGCGGGCAGCTGGATCGTTA
CCAGGGGGAGGTGGAGACGGCGCTGGCTCCGCACGGGGAGGTCTTGACAC
GTCTCATGTTTGCGGCGCTTGCGGTGAGCCCAGCACGGTTG
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Coding sequence (CDS) from alignment at F-distichus_contig97074:48..1688+

>mRNA_F-distichus_contig97074.19160.1 ID=mRNA_F-distichus_contig97074.19160.1|Name=mRNA_F-distichus_contig97074.19160.1|organism=Fucus distichus monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at F-distichus_contig97074:48..1688+ (Fucus distichus monoicous)
ATGGCTCAGGCGGTGCGGTTCTTGGATGTACGTGATATGCCCCCTGCTCC
GCCACCCGGACCCTCACCGAGGCTTCCTGCAGCTCCAGGCGATGGCGTCG
GCGGAGGCGGGGCGGGGGAGTGGAGCGGCCAGCCTCGGCCTCACATCTCG
GCGGAGCTCGTACGCACGCTTTGGCCGATGCTCGAGGCGGCACCTGGGCG
CCTGGGAGGCAGCGCGGAGATCATCAAGCAATTGTTCATATTGGTGGGCA
AGATGCTCACGTCGCTGAGGATGGTTCTAGCGCAGCAGATGGCTCAGGCG
GTGCGGTTCTTGGATGTACGTGATATGCCCCCTGCTCCGCCACCCGGACC
CTCACCGAGGCTTCCTGCAGCTCCAGGCGATGGCGTCGGCGGAGGCGGGG
CGGGGGAGTGGAGCGGCCAGCCTCGGCCTCACATCTCGGCGGAGCTCGTA
CGCACGCTTTGGCCGATGCTCGAGGCGGCACCTGGGCGCCTGGGAGGCAG
CGCGGAGATCATCAAGCAATTGTTCATATTGGTGGGCAAGATGCTCACGT
CGCTGAGGATGGTTCTAGCGCAGCAGGTCCACATCCCGACCCTCCTGAAG
ATGATCATGGACTGCTACGACGAGCGGCAGTACCCGTGCTGCCTGGACGT
GATGACCACCGCCGTCGAGGTGTACGGAGGGGCAGACGAGGCCATCCAAC
ACTTCCGCGCTCTGCTCGGGCGAGCGTCGGCGCGGACTTTCGCGGCGGTC
CACATCCCGACCCTCCTGAAGATGATCATGGACTGCTACGACGAGCGGCA
GTACCCGTGCTGCCTGGACGTGATGACCACCGCCGTCGAGGTGTACGGAG
GGGCAGACGAGGCCATCCAACACTTCCGCGCTCTGCTCGGGCGAGCGTCG
GCGCGGACTTTCGCGGCGCTGGATACCGCCCTCCGCCTCGCCGTGGCGTG
TGTTGGGGCGTCCGACCTCGAGCGGGAATCGGCGCGGGCGGTGCTTGTGT
TTCTGGGGCAGCTGGCGGGTCGGTGTGGCGGGCAGCTGGATCGTTACCAG
GGGGAGGTGGAGACGGCGCTGGCTCCGCACGGGGAGGTCTTGACACGTCT
CATGTTTGCGGCGCTTGCGGTGAGCCCAGCACGGTTGCTGGATACCGCCC
TCCGCCTCGCCGTGGCGTGTGTTGGGGCGTCCGACCTCGAGCGGGAATCG
GCGCGGGCGGTGCTTGTGTTTCTGGGGCAGCTGGCGGGTCGGTGTGGCGG
GCAGCTGGATCGTTACCAGGGGGAGGTGGAGACGGCGCTGGCTCCGCACG
GGGAGGTCTTGACACGTCTCATGTTTGCGGCGCTTGCGGTGAGCCCAGCA
CGGTTG
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