mRNA_F-distichus_contig96980.19150.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96980.19150.1
Unique NamemRNA_F-distichus_contig96980.19150.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A151R4G2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R4G2_CAJCA)

HSP 1 Score: 62.8 bits (151), Expect = 2.020e-9
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   22 WISDDGASRHMTSSHDLMTNYRKCSGIART--ADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFT 258
            WISD GAS HMT +  +++N R+CS I      DG  LPI G+GD +++  +      + L ++  VP L+ NLLS+ Q T
Sbjct:   19 WISDTGASNHMTGTSSMLSNIRQCSSIDSVLIGDGSPLPIHGIGDSVIKQKN----ITLPLNNVLLVPNLTKNLLSVSQLT 95          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-7
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    4 VGELESWISDDGASRHMTSSHDLMTNYRKCSG--IARTADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLS 243
            + E E WISD GAS HMT    +++N R+CSG       DG  LPI G+GD  ++  + +    + L  +  VP L+ NLLS
Sbjct:  335 IAETE-WISDTGASNHMTGKTSMLSNIRQCSGTDFVLIGDGSPLPIHGIGDSFIKQKNTT----LPLHDVLLVPDLTKNLLS 411          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: UPI00142DACCE (uncharacterized protein LOC117127346 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142DACCE)

HSP 1 Score: 57.8 bits (138), Expect = 2.720e-7
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   25 ISDDGASRHMTSSHDLMTNYRKCSGIARTADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFT 258
            I D GAS HM S   LM++ +K +G    A+GD +PIEGVG + L F  DS AF        ++PQ + NLLS+++ T
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL-FDKDSDAF--------YMPQFASNLLSVRKAT 376          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-7
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   25 ISDDGASRHMTSSHDLMTNYRKCSGIARTADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFT 258
            I D GAS HM S   LM++ +K +G    A+GD +PIEGVG + L F  DS AF        ++PQ + NLLS+++ T
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL-FDKDSDAF--------YMPQFASNLLSVRKAT 376          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A2Z6NS08_TRISU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NS08_TRISU)

HSP 1 Score: 57.0 bits (136), Expect = 5.590e-7
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1
Query:    4 VGELESWISDDGASRHMTSSHDLMTNYRKCSGIART--ADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLS 243
            + E E WISD GAS HMT    ++ N R+CSG       DG  LPI G+GD  ++         + L  +  VP L+ NLLS
Sbjct:  334 IAETE-WISDTGASNHMTGKTSMLHNIRQCSGTDSVLIGDGSPLPIHGIGDSFIK----QNNITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 56.6 bits (135), Expect = 7.000e-7
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   25 ISDDGASRHMTSSHDLMTNYRKCSGIARTADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFT 258
            I D GAS HM S   LM++ +K +G    A+GD +PIEGVG + L F  DS AF        ++PQ + NLLS+++ T
Sbjct:  264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL-FDKDSDAF--------YMPQFASNLLSVRKAT 332          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A6G0W5N4_9STRA (gag_pre-integrs domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5N4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.850e-6
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 1
Query:   22 WISDDGASRHMTSSHDLMTNYRKCSGIARTADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFT 258
            WI D GA  H   +    TN R   G  R A+G+ +PIEG G ++L   + +G   + L  + ++P +  NL SL + T
Sbjct:  325 WILDSGACDHYCKNAAWFTNLRPHDGAVRAANGEDMPIEGCGTVVLEMNTTAGIVKVTLDDVWYIPTIQFNLFSLPRVT 403          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A2K3MQW2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQW2_TRIPR)

HSP 1 Score: 54.3 bits (129), Expect = 4.980e-6
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    4 VGELESWISDDGASRHMTSSHDLMTNYRKCSGIART--ADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLS 243
            + E E WISD GAS HMT +  +++N R+ SG       DG  LPI G+GD  ++  +      + L  +  VP L+ NLLS
Sbjct:  334 IAETE-WISDTGASNHMTGTASMLSNIRQSSGTDSVLIGDGSPLPIHGIGDSFIKQKN----ITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: A0A2Z6LMX1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LMX1_TRISU)

HSP 1 Score: 53.9 bits (128), Expect = 6.800e-6
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1
Query:    4 VGELESWISDDGASRHMTSSHDLMTNYRKCSGIART--ADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLS 243
            + E E WISD GAS HMT +  ++ N R+ SG       DG  LPI G+GD  ++  +      + L  +  VP L+ NLLS
Sbjct:  334 IAETE-WISDTGASNHMTGTASMLNNIRQSSGTDSVLIGDGSPLPIHGIGDSFIKQKN----ITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 53.9 bits (128), Expect = 6.870e-6
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   25 ISDDGASRHMTSSHDLMTNYRKCSGIARTADGDVLPIEGVGDILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFTAAHHTY--FGTN 288
            + D GAS HM S+ +L+ N     G    A+GD +PIEG+G++ L F  DS AF        F+P+ + NLLS+++ T   + Y  FG N
Sbjct:  330 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKRTTRDLNCYAIFGPN 410          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96980.19150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A151R4G2_CAJCA2.020e-940.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3L0D5_TRIPR1.550e-740.24Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
UPI00142DACCE2.720e-743.59uncharacterized protein LOC117127346 n=1 Tax=Brass... [more]
A0A8D9D973_BRACM2.880e-743.59(field mustard) hypothetical protein (Fragment) n=... [more]
A0A2Z6NS08_TRISU5.590e-740.24Integrase catalytic domain-containing protein (Fra... [more]
UPI00142D92C57.000e-743.59uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
A0A6G0W5N4_9STRA1.850e-634.18gag_pre-integrs domain-containing protein n=2 Tax=... [more]
A0A2K3MQW2_TRIPR4.980e-639.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z6LMX1_TRISU6.800e-639.02Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
Q9FWZ5_ARATH6.870e-638.89Putative retroelement polyprotein n=1 Tax=Arabidop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96980contigF-distichus_contig96980:1610..1972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.1126883-CDS-F-distichus_contig96980:1609..19721622931148.1126883-CDS-F-distichus_contig96980:1609..1972Fucus distichus monoicousCDSF-distichus_contig96980 1610..1972 -
1690886179.0644405-CDS-F-distichus_contig96980:1609..19721690886179.0644405-CDS-F-distichus_contig96980:1609..1972Fucus distichus monoicousCDSF-distichus_contig96980 1610..1972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96980.19150.1prot_F-distichus_contig96980.19150.1Fucus distichus monoicouspolypeptideF-distichus_contig96980 1610..1972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96980.19150.1

>prot_F-distichus_contig96980.19150.1 ID=prot_F-distichus_contig96980.19150.1|Name=mRNA_F-distichus_contig96980.19150.1|organism=Fucus distichus monoicous|type=polypeptide|length=121bp
EVGELESWISDDGASRHMTSSHDLMTNYRKCSGIARTADGDVLPIEGVGD
ILLRFPSDSGAFDIQLLSIAFVPQLSHNLLSLQQFTAAHHTYFGTNNGME
LRFKSGRTLQARNIGRANVLR
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mRNA from alignment at F-distichus_contig96980:1610..1972-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96980.19150.1 ID=mRNA_F-distichus_contig96980.19150.1|Name=mRNA_F-distichus_contig96980.19150.1|organism=Fucus distichus monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at F-distichus_contig96980:1610..1972- (Fucus distichus monoicous)
GAGGTTGGGGAGTTAGAGTCGTGGATATCAGATGATGGCGCATCGCGACA CATGACCTCGTCACACGACTTGATGACCAACTACCGTAAATGCAGTGGCA TTGCTAGGACCGCTGACGGTGATGTACTCCCGATTGAGGGTGTTGGGGAC ATTCTCCTTCGCTTTCCGTCTGACTCAGGAGCGTTTGACATTCAGCTGTT GAGCATTGCGTTTGTACCACAACTGAGTCACAACCTCTTGTCATTACAGC AGTTTACAGCCGCCCACCATACATACTTCGGTACGAATAATGGTATGGAG TTACGGTTCAAGTCAGGTCGAACGCTACAAGCTAGAAATATCGGCCGGGC AAATGTGCTACGT
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Coding sequence (CDS) from alignment at F-distichus_contig96980:1610..1972-

>mRNA_F-distichus_contig96980.19150.1 ID=mRNA_F-distichus_contig96980.19150.1|Name=mRNA_F-distichus_contig96980.19150.1|organism=Fucus distichus monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at F-distichus_contig96980:1610..1972- (Fucus distichus monoicous)
GAGGTTGGGGAGTTAGAGTCGTGGATATCAGATGATGGCGCATCGCGACA
CATGACCTCGTCACACGACTTGATGACCAACTACCGTAAATGCAGTGGCA
TTGCTAGGACCGCTGACGGTGATGTACTCCCGATTGAGGGTGTTGGGGAC
ATTCTCCTTCGCTTTCCGTCTGACTCAGGAGCGTTTGACATTCAGCTGTT
GAGCATTGCGTTTGTACCACAACTGAGTCACAACCTCTTGTCATTACAGC
AGTTTACAGCCGCCCACCATACATACTTCGGTACGAATAATGGTATGGAG
TTACGGTTCAAGTCAGGTCGAACGCTACAAGCTAGAAATATCGGCCGGGC
AAATGTGCTACGTGAGGTTGGGGAGTTAGAGTCGTGGATATCAGATGATG
GCGCATCGCGACACATGACCTCGTCACACGACTTGATGACCAACTACCGT
AAATGCAGTGGCATTGCTAGGACCGCTGACGGTGATGTACTCCCGATTGA
GGGTGTTGGGGACATTCTCCTTCGCTTTCCGTCTGACTCAGGAGCGTTTG
ACATTCAGCTGTTGAGCATTGCGTTTGTACCACAACTGAGTCACAACCTC
TTGTCATTACAGCAGTTTACAGCCGCCCACCATACATACTTCGGTACGAA
TAATGGTATGGAGTTACGGTTCAAGTCAGGTCGAACGCTACAAGCTAGAA
ATATCGGCCGGGCAAATGTGCTACGT
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