mRNA_F-distichus_contig96955.19147.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96955.19147.1
Unique NamemRNA_F-distichus_contig96955.19147.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 6.620e-39
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 2 
Query:  278 DLVQCSTCGVRVHRKCYGVPEDIGKPGAVSGDQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPGSRLVDPL 529
            DLVQC+ CGVRVHRKCYGVPE +G PGA  G++W C PC++RVS P+CTLCPRKGGAF+RI+G+ YCHA+CAERTPG+R+VDPL
Sbjct: 1422 DLVQCAKCGVRVHRKCYGVPEGVGGPGAGKGEKWVCAPCTARVSRPSCTLCPRKGGAFLRIKGSQYCHAYCAERTPGARVVDPL 1505
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 5.660e-38
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 2 
Query:  269 LSPDLVQCSTCGVRVHRKCYGVPEDIGKPGAVSGDQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPGSRLVDPL 529
            +  DLVQC+ CGVRVHRKCYGVPE +G PGA  G+++ C PC++RVS+P+CTLCPRKGGAF+RI+G+ YCHA+CAERTPG+R+VDPL
Sbjct: 1218 VEEDLVQCAKCGVRVHRKCYGVPEGVGGPGAGKGERFVCAPCTARVSQPSCTLCPRKGGAFLRIKGSQYCHAYCAERTPGARVVDPL 1304
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A8J9YAJ1_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=2 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YAJ1_9NEOP)

HSP 1 Score: 78.2 bits (191), Expect = 5.480e-13
Identity = 39/91 (42.86%), Postives = 47/91 (51.65%), Query Frame = 2 
Query:  254 GNCGSLSPD---LVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPG 508
            G  GS S D   +V+C  CGV VH  CYGV +   +   VS    + WFC  C + VS+PNC LCP KGG F       + H  CA   PG
Sbjct:  116 GCLGSRSDDFNEIVECDGCGVTVHEGCYGVSDVASESSTVSSASTEPWFCEACKAGVSDPNCELCPNKGGIFKETEVGAWVHLVCALYVPG 206
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: UPI001F86268A (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F86268A)

HSP 1 Score: 77.8 bits (190), Expect = 6.890e-13
Identity = 38/91 (41.76%), Postives = 47/91 (51.65%), Query Frame = 2 
Query:  254 GNCGSLSPD---LVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPG 508
            G  GS S D   +V+C  CGV VH  CYGV +   +   VS    + WFC  C + V++PNC LCP KGG F       + H  CA   PG
Sbjct:  114 GCLGSRSDDFNEIVECDGCGVTVHEGCYGVSDTTSESSTVSSASTEPWFCEACKAGVTDPNCELCPNKGGIFKETEVGAWVHLVCALYVPG 204
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A2H1WTI6_SPOFR (SFRICE_002859 n=16 Tax=Noctuidae TaxID=7100 RepID=A0A2H1WTI6_SPOFR)

HSP 1 Score: 77.8 bits (190), Expect = 7.390e-13
Identity = 38/91 (41.76%), Postives = 47/91 (51.65%), Query Frame = 2 
Query:  254 GNCGSLSPD---LVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPG 508
            G  GS S D   +V+C  CGV VH  CYGV +   +   VS    + WFC  C + V++PNC LCP KGG F       + H  CA   PG
Sbjct:  114 GCLGSRSDDFNEIVECDGCGVTVHEGCYGVSDTTSESSTVSSASTEPWFCEACKAGVTDPNCELCPNKGGIFKETEVGAWVHLVCALYVPG 204
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A7E5WAL0_TRINI (PHD finger protein 14 isoform X1 n=8 Tax=Noctuidae TaxID=7100 RepID=A0A7E5WAL0_TRINI)

HSP 1 Score: 77.8 bits (190), Expect = 7.400e-13
Identity = 38/91 (41.76%), Postives = 47/91 (51.65%), Query Frame = 2 
Query:  254 GNCGSLSPD---LVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPG 508
            G  GS S D   +V+C  CGV VH  CYGV +   +   VS    + WFC  C + V++PNC LCP KGG F       + H  CA   PG
Sbjct:  120 GCLGSRSDDFNEIVECDGCGVTVHEGCYGVSDTTSESSTVSSASTEPWFCEACKAGVTDPNCELCPNKGGIFKETEVGAWVHLVCALYVPG 210
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A8D8JKW9_CULPI (PHD finger protein 14 n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8JKW9_CULPI)

HSP 1 Score: 77.4 bits (189), Expect = 9.570e-13
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 2 
Query:  278 DLVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPGSRL--VDPLAAVEALE 550
            ++V+C  CGV VH  CYGV E       VS    + WFC  C + VS+P+C LCP KGG F       + H  CA   PG     VD L++V   E
Sbjct:  100 EIVECDGCGVTVHEGCYGVSESTSVSSTVSSCSTEPWFCEACKAGVSDPDCELCPNKGGIFKETDVGKWVHLVCALYVPGVAFGEVDQLSSVTLFE 195
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BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A8D8AKE5_CULPI (PHD finger protein 14 n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8AKE5_CULPI)

HSP 1 Score: 77.4 bits (189), Expect = 1.020e-12
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 2 
Query:  278 DLVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPGSRL--VDPLAAVEALE 550
            ++V+C  CGV VH  CYGV E       VS    + WFC  C + VS+P+C LCP KGG F       + H  CA   PG     VD L++V   E
Sbjct:   95 EIVECDGCGVTVHEGCYGVSESTSVSSTVSSCSTEPWFCEACKAGVSDPDCELCPNKGGIFKETDVGKWVHLVCALYVPGVAFGEVDQLSSVTLFE 190
[Close]
BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: A0A8D8DVA8_CULPI (PHD finger protein 14 n=3 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8DVA8_CULPI)

HSP 1 Score: 77.4 bits (189), Expect = 1.020e-12
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 2 
Query:  278 DLVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPGSRL--VDPLAAVEALE 550
            ++V+C  CGV VH  CYGV E       VS    + WFC  C + VS+P+C LCP KGG F       + H  CA   PG     VD L++V   E
Sbjct:  100 EIVECDGCGVTVHEGCYGVSESTSVSSTVSSCSTEPWFCEACKAGVSDPDCELCPNKGGIFKETDVGKWVHLVCALYVPGVAFGEVDQLSSVTLFE 195
[Close]
BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Match: B0X4W5_CULQU (Phd finger protein n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=B0X4W5_CULQU)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-12
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = 2 
Query:  278 DLVQCSTCGVRVHRKCYGVPEDIGKPGAVSG---DQWFCVPCSSRVSEPNCTLCPRKGGAFVRIRGAHYCHAFCAERTPGSRL--VDPLAAVEALE 550
            ++V+C  CGV VH  CYGV E       VS    + WFC  C + VS+P+C LCP KGG F       + H  CA   PG     VD L++V   E
Sbjct:  362 EIVECDGCGVTVHEGCYGVSESTSVSSTVSSCSTEPWFCEACKAGVSDPDCELCPNKGGIFKETDVGKWVHLVCALYVPGVAFGEVDQLSSVTLFE 457
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96955.19147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LHH7_9PHAE6.620e-3973.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV42_ECTSI5.660e-3870.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J9YAJ1_9NEOP5.480e-1342.86(lesser marbled fritillary) hypothetical protein (... [more]
UPI001F86268A6.890e-1341.76Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A2H1WTI6_SPOFR7.390e-1341.76SFRICE_002859 n=16 Tax=Noctuidae TaxID=7100 RepID=... [more]
A0A7E5WAL0_TRINI7.400e-1341.76PHD finger protein 14 isoform X1 n=8 Tax=Noctuidae... [more]
A0A8D8JKW9_CULPI9.570e-1340.63PHD finger protein 14 n=1 Tax=Culex pipiens TaxID=... [more]
A0A8D8AKE5_CULPI1.020e-1240.63PHD finger protein 14 n=2 Tax=Culex pipiens TaxID=... [more]
A0A8D8DVA8_CULPI1.020e-1240.63PHD finger protein 14 n=3 Tax=Culex pipiens TaxID=... [more]
B0X4W5_CULQU1.030e-1240.63Phd finger protein n=1 Tax=Culex quinquefasciatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96955contigF-distichus_contig96955:701..1884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size693
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96955.19147.1prot_F-distichus_contig96955.19147.1Fucus distichus monoicouspolypeptideF-distichus_contig96955 1403..1583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.7230144-UTR-F-distichus_contig96955:700..10311622931147.7230144-UTR-F-distichus_contig96955:700..1031Fucus distichus monoicousUTRF-distichus_contig96955 701..1031 -
1690886178.8662298-UTR-F-distichus_contig96955:700..10311690886178.8662298-UTR-F-distichus_contig96955:700..1031Fucus distichus monoicousUTRF-distichus_contig96955 701..1031 -
1622931147.7429116-UTR-F-distichus_contig96955:1312..14021622931147.7429116-UTR-F-distichus_contig96955:1312..1402Fucus distichus monoicousUTRF-distichus_contig96955 1313..1402 -
1690886178.8773017-UTR-F-distichus_contig96955:1312..14021690886178.8773017-UTR-F-distichus_contig96955:1312..1402Fucus distichus monoicousUTRF-distichus_contig96955 1313..1402 -
1622931147.8212078-UTR-F-distichus_contig96955:1583..16221622931147.8212078-UTR-F-distichus_contig96955:1583..1622Fucus distichus monoicousUTRF-distichus_contig96955 1584..1622 -
1690886178.927022-UTR-F-distichus_contig96955:1583..16221690886178.927022-UTR-F-distichus_contig96955:1583..1622Fucus distichus monoicousUTRF-distichus_contig96955 1584..1622 -
1622931147.8395739-UTR-F-distichus_contig96955:1819..18841622931147.8395739-UTR-F-distichus_contig96955:1819..1884Fucus distichus monoicousUTRF-distichus_contig96955 1820..1884 -
1690886178.9382508-UTR-F-distichus_contig96955:1819..18841690886178.9382508-UTR-F-distichus_contig96955:1819..1884Fucus distichus monoicousUTRF-distichus_contig96955 1820..1884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.7777305-CDS-F-distichus_contig96955:1402..14061622931147.7777305-CDS-F-distichus_contig96955:1402..1406Fucus distichus monoicousCDSF-distichus_contig96955 1403..1406 -
1690886178.89043-CDS-F-distichus_contig96955:1402..14061690886178.89043-CDS-F-distichus_contig96955:1402..1406Fucus distichus monoicousCDSF-distichus_contig96955 1403..1406 -
1622931147.8048275-CDS-F-distichus_contig96955:1419..15831622931147.8048275-CDS-F-distichus_contig96955:1419..1583Fucus distichus monoicousCDSF-distichus_contig96955 1420..1583 -
1690886178.900221-CDS-F-distichus_contig96955:1419..15831690886178.900221-CDS-F-distichus_contig96955:1419..1583Fucus distichus monoicousCDSF-distichus_contig96955 1420..1583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96955.19147.1

>prot_F-distichus_contig96955.19147.1 ID=prot_F-distichus_contig96955.19147.1|Name=mRNA_F-distichus_contig96955.19147.1|organism=Fucus distichus monoicous|type=polypeptide|length=56bp
MRLSKPRALPPDKYERFACAVCMKSRQPLLGFRKEAETGEASSGGAAGSG
ATAEA*
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mRNA from alignment at F-distichus_contig96955:701..1884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96955.19147.1 ID=mRNA_F-distichus_contig96955.19147.1|Name=mRNA_F-distichus_contig96955.19147.1|organism=Fucus distichus monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at F-distichus_contig96955:701..1884- (Fucus distichus monoicous)
AGGGGCATCCAGAATGGCAGCTGGAGGGCACGAAGCGAAAGAAGTCCAAG
GGCCAACTTAAGAAGGTAGGTGCAGGTGCTCGGGCGGGGGGGCTTGATGG
GGGGCGGGCAAGAGCACATTATTTTTAATGCCATTTTTTTACGGTAGAGA
TGTACCGTCGATGCCGACGATGGTGGTAAACACGAGCCCTTGACTCACCA
TCCATTACGGATTCCGACCTTCTTTTTTCACCCTTACGTGTGCTGCTTTT
GACTAATAGCAGGAAGACAAAAAGGCGGAGCGCGAGAAGCAGCAAAGCTC
CATGCGTCTCTCCAAGCCCCGAGCGCTGCCGCCCGACAAATACGAGAGGT
TCGCGTGCGCTGTGTGCATGAAATCGCGGCAGCCCCTGCTGGGGTTTCGA
AAAGAGGCGGAGACCGGAGAGGCTTCCAGCGGGGGGGCTGCAGGGTCGGG
GGCAACTGCGGAAGCGCCCCCAGCGGAGTTGAGTCCGGACCTGGTGCAGT
GCTCGACTTGCGGCGTGAGAGTCCACAGGAAGTGCTACGGCGTGCCGGAA
GATATTGGCAAACCAGGAGCAGGTATGTATGCGTTGAATCAGCAAGGTGG
AGGAGTGGGGCATTCCCTCTTCGCAAAACGCTTTTGGGGAAAGGAAGAGC
GTTTGCAAGGAACATGATAAGTACGTTTCTCGAAAATACTTTCCTCGTGT
GTGTGGGTAGAAACGTCTCTCTTGAAATAAACTAACTCGGCATGGCTTCG
CTCAGATCTGTGCTCCTTCCCTGCCCGCCCGCTTGCTCTGCTCGTGGAAC
CTGGCGTAACAACGCCCCTCTTATATCACAAACAAAATGTATACCATTCA
CAGTCTCAGGGGACCAGTGGTTCTGCGTCCCGTGCTCCTCCCGCGTGAGC
GAGCCGAACTGCACTCTCTGCCCCCGAAAAGGGGGCGCGTTCGTGCGCAT
CCGAGGGGCACACTACTGCCACGCCTTCTGCGCCGAGCGTACACCGGGGT
CTCGTCTGGTCGACCCCTTGGCCGCCGTGGAAGCCCTTGAGACGGCGGCG
AGGAGCGAGGAGGCGTTGACAGCCGAGGGGGGTACGGGTACGAGGAAGAC
CGGCGGCAAGGCGTCCAAAGCCAAGGGATGCAGTACTTCCAAGGCGAAGA
TGGCATGCGTGGAAGATATGGACGCCGTTGACGT
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Coding sequence (CDS) from alignment at F-distichus_contig96955:701..1884-

>mRNA_F-distichus_contig96955.19147.1 ID=mRNA_F-distichus_contig96955.19147.1|Name=mRNA_F-distichus_contig96955.19147.1|organism=Fucus distichus monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at F-distichus_contig96955:701..1884- (Fucus distichus monoicous)
ATGCGTCTCTCCAAGCCCCGAGCGCTGCCGCCCGACAAATACGAGAGGTT
CGCGTGCGCTGTGTGCATGAAATCGCGGCAGCCCCTGCTGGGGTTTCGAA
AAGAGGCGGAGACCGGAGAGGCTTCCAGCGGGGGGGCTGCAGGGTCGGGG
GCAACTGCGGAAGCATGCGTCTCTCCAAGCCCCGAGCGCTGCCGCCCGAC
AAATACGAGAGGTTCGCGTGCGCTGTGTGCATGAAATCGCGGCAGCCCCT
GCTGGGGTTTCGAAAAGAGGCGGAGACCGGAGAGGCTTCCAGCGGGGGGG
CTGCAGGGTCGGGGGCAACTGCGGAAGCTTGATTGA
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