mRNA_F-distichus_contig96952.19146.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 145 bits (367), Expect = 8.160e-38 Identity = 90/273 (32.97%), Postives = 138/273 (50.55%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFP 807
D+ E H AH E + R T + +G + AC C KA R + ++T+ R+ + R F D+GG K +S+GG Y +I DD T + F+ KSD +A + +A S + +R+DN G+F G+F + I E TP +PQYNGVAER L + E A+ + + ++ +KLWA+AM +AC+ N + ++ + S YE+W+G+ P PF Y R R K+ PKGE C ++G R+ P
Sbjct: 33 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHP 303
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.440e-37 Identity = 100/282 (35.46%), Postives = 146/282 (51.77%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAV--GYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
DV E H AH E + R T + +GIE T + AC C KA + + +T+ R+ + R FVD+GG K +S+GG Y +I DD T + F+ KSD A+A S +A S + +R+DN GEF GEF + I E TP +PQYNGVAER L + A+ + + ++ ++LWA+AM +AC+ N + ++ + KS YE+W G+ A H RP+ + Y R R K+ PKGE C ++G R+ P VL
Sbjct: 571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE---ASHARPYPFLKPAYCRWQ-RPSKLLPKGEACFYVGPSRDHPRDCHRVL 848
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 149 bits (376), Expect = 7.580e-37 Identity = 96/280 (34.29%), Postives = 141/280 (50.36%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
DV E H AH + + R T + +G E + C C KA + + ++T+ R+ + R FVD+GG K +S+GG Y +I DD T + F+ KSD A S +A S + +R+DN GEF GEF + I E TP +PQYNGVAER L + E A+ + + ++ +KLWA+AM +AC+ N + ++ + KS YE+W+G+ P PF Y R R K+ PKGE C ++G R+ P VL
Sbjct: 665 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL 942
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 149 bits (376), Expect = 7.680e-37 Identity = 96/280 (34.29%), Postives = 141/280 (50.36%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
DV E H AH + + R T + +G E + C C KA + + ++T+ R+ + R FVD+GG K +S+GG Y +I DD T + F+ KSD A S +A S + +R+DN GEF GEF + I E TP +PQYNGVAER L + E A+ + + ++ +KLWA+AM +AC+ N + ++ + KS YE+W+G+ P PF Y R R K+ PKGE C ++G R+ P VL
Sbjct: 372 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL 649
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 147 bits (370), Expect = 9.950e-37 Identity = 98/289 (33.91%), Postives = 146/289 (50.52%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADY---ITPQKLSTKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVLLVRSRNI 849
D+ E H AH E + R T + +G + AC C KA R + ++T+ R+ + R FVD+GG K +S+GG Y +I DD T + F+ +SD A + +A I P + + +R+DN GEF GEF + I E TP +PQYNGVAER L + E A+ + + ++ +KLWA+AM +AC+ N + ++ + S YE+W+G+ P PF Y R R K+ PKGE C ++G R+ P VL R+R I
Sbjct: 253 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFV--EIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL-TRARTI 536
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: B1PJ47_PHATR (Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B1PJ47_PHATR) HSP 1 Score: 146 bits (368), Expect = 9.080e-36 Identity = 97/287 (33.80%), Postives = 151/287 (52.61%), Query Frame = 1
Query: 1 SRDVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLSTKCIRTDNCGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLREKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLP-IADHLRPFGAVGYARQSMR-EHKMTPKGEECVFMGIPRNFPTGTVSVLLVRSRNIVE 855
S D+ E H +L H E + +KT++ I+ T + +CE C KAK+ +V K T RA G+R FVD+ GP + LG Y + VDD T + FV K+SD + L V + + TK +R DN GE + ++ D++ +T E T PDTPQ NGV ER + L+++A +M D + R LWA+A+ A D+ N S+ T +D KS +L+ +L + D L FG +GYA + + K K + +G +N T + ++++I+E
Sbjct: 566 SMDINEAHDKLGHKGEVLLKKTLKHHSIKVTGELQSCEGCCLAKAKQKSVSKTTNIRAKSPGERLFVDMSGPFTATILGSR-YQIQVVDDATRKGFIGFVKKRSDLSQWLEENVLSKLEGMQKQTKYLRADNAGENKNPLEKLCDKKGMTLELTAPDTPQQNGVVERRIAVLQQRANAMMMAAD-LTPEARALLWAEALNTANDLENISLNTMSD--KSPDKLFSNELTKLMDRLVEFGRIGYATIRRKFKGKWKEKSLRVIMVGYAKNHSADTYRLYNPQNKSIIE 848
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 145 bits (367), Expect = 1.190e-35 Identity = 95/280 (33.93%), Postives = 140/280 (50.00%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
D+ E H AH E + R T + +G + AC C KA R + +T+ R+ + R FVD+GG K +S+GG Y +I DD T + F+ KSD +A + +A S + +R+DN GEF GEF + I E TP +PQYNGVAER L + E A+ + + ++ +KLWA+AM +AC+ N + ++ + S YE+W+G+ P PF Y R R K+ PKGE C ++G R+ P VL
Sbjct: 186 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL 463
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.690e-35 Identity = 94/280 (33.57%), Postives = 140/280 (50.00%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
D+ E H AH E + R T + +G + AC C KA R + ++T+ R+ + R FVD+GG K +S+GG Y +I DD T + F+ KSD +A + +A S + +R+DN GEF GEF + I E TP +PQYNGVAER L + E A+ + + ++ +KLWA+AM +AC+ N + ++ + YE+W+G+ P PF Y R R K+ PKGE C ++G R+ P VL
Sbjct: 131 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL 408
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 144 bits (362), Expect = 5.580e-35 Identity = 94/280 (33.57%), Postives = 142/280 (50.71%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLST-KCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
DV + H H E + R T + +GIE T + AC C KA R A+ T + + R FV++GG K +S+GG Y +I DD T + F+ KSD +A S +A+ S + +R+DN GEF GEF + I E TP +P++NGVAER L + E A+ + + ++ ++LWA+AM +AC+ N + ++ + KS YE+W+G+ A PF Y + R K+ PKGE C ++G R+ P VL
Sbjct: 392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL 669
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 134 bits (338), Expect = 4.240e-33 Identity = 90/274 (32.85%), Postives = 134/274 (48.91%), Query Frame = 1
Query: 7 DVMEVHRRLAHPSEDITRKTVEMVGIETTD-QWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLSTKC----IRTDNCGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVIN--VLREKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFP 807
D+ H H E++ +KT + G++ T C C K + + K T+ RA+ + R F+++GG ++ S+GGN Y +I DDCT + V F+ KSD AAA +ADY + + C RTD GEF+G+F R I E TPP+TP+YNGVAER L L + A+ + + + LWA+A+ AC N + TT KS EL+ G P PF +S R+ + P+ + +G+P P
Sbjct: 134 DLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig96952.19146.1 >prot_F-distichus_contig96952.19146.1 ID=prot_F-distichus_contig96952.19146.1|Name=mRNA_F-distichus_contig96952.19146.1|organism=Fucus distichus monoicous|type=polypeptide|length=281bp MEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTback to top mRNA from alignment at F-distichus_contig96952:419..1273- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig96952.19146.1 ID=mRNA_F-distichus_contig96952.19146.1|Name=mRNA_F-distichus_contig96952.19146.1|organism=Fucus distichus monoicous|type=mRNA|length=855bp|location=Sequence derived from alignment at F-distichus_contig96952:419..1273- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig96952:419..1273- >mRNA_F-distichus_contig96952.19146.1 ID=mRNA_F-distichus_contig96952.19146.1|Name=mRNA_F-distichus_contig96952.19146.1|organism=Fucus distichus monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at F-distichus_contig96952:419..1273- (Fucus distichus monoicous)back to top |