mRNA_F-distichus_contig96952.19146.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96952.19146.1
Unique NamemRNA_F-distichus_contig96952.19146.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.160e-38
Identity = 90/273 (32.97%), Postives = 138/273 (50.55%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFP 807
            D+ E H   AH  E + R T + +G +      AC  C   KA R  + ++T+ R+  +  R F D+GG K  +S+GG  Y +I  DD T    + F+  KSD  +A  + +A        S  + +R+DN G+F  G+F    +   I  E TP  +PQYNGVAER L  + E A+    +   +   ++    +KLWA+AM +AC+  N +  ++  +  S YE+W+G+ P      PF    Y R   R  K+ PKGE C ++G  R+ P
Sbjct:   33 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHP 303          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.440e-37
Identity = 100/282 (35.46%), Postives = 146/282 (51.77%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAV--GYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
            DV E H   AH  E + R T + +GIE T +  AC  C   KA +  +  +T+ R+  +  R FVD+GG K  +S+GG  Y +I  DD T    + F+  KSD A+A  S +A        S  + +R+DN GEF  GEF    +   I  E TP  +PQYNGVAER L  +   A+    +   +   ++    ++LWA+AM +AC+  N +  ++  + KS YE+W G+   A H RP+  +   Y R   R  K+ PKGE C ++G  R+ P     VL
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE---ASHARPYPFLKPAYCRWQ-RPSKLLPKGEACFYVGPSRDHPRDCHRVL 848          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.580e-37
Identity = 96/280 (34.29%), Postives = 141/280 (50.36%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
            DV E H   AH  + + R T + +G E   +   C  C   KA +  + ++T+ R+  +  R FVD+GG K  +S+GG  Y +I  DD T    + F+  KSD   A  S +A        S  + +R+DN GEF  GEF    +   I  E TP  +PQYNGVAER L  + E A+    +   +   ++    +KLWA+AM +AC+  N +  ++  + KS YE+W+G+ P      PF    Y R   R  K+ PKGE C ++G  R+ P     VL
Sbjct:  665 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL 942          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.680e-37
Identity = 96/280 (34.29%), Postives = 141/280 (50.36%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
            DV E H   AH  + + R T + +G E   +   C  C   KA +  + ++T+ R+  +  R FVD+GG K  +S+GG  Y +I  DD T    + F+  KSD   A  S +A        S  + +R+DN GEF  GEF    +   I  E TP  +PQYNGVAER L  + E A+    +   +   ++    +KLWA+AM +AC+  N +  ++  + KS YE+W+G+ P      PF    Y R   R  K+ PKGE C ++G  R+ P     VL
Sbjct:  372 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL 649          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 9.950e-37
Identity = 98/289 (33.91%), Postives = 146/289 (50.52%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADY---ITPQKLSTKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVLLVRSRNI 849
            D+ E H   AH  E + R T + +G +      AC  C   KA R  + ++T+ R+  +  R FVD+GG K  +S+GG  Y +I  DD T    + F+  +SD   A  + +A     I P  +  + +R+DN GEF  GEF    +   I  E TP  +PQYNGVAER L  + E A+    +   +   ++    +KLWA+AM +AC+  N +  ++  +  S YE+W+G+ P      PF    Y R   R  K+ PKGE C ++G  R+ P     VL  R+R I
Sbjct:  253 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFV--EIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL-TRARTI 536          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: B1PJ47_PHATR (Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B1PJ47_PHATR)

HSP 1 Score: 146 bits (368), Expect = 9.080e-36
Identity = 97/287 (33.80%), Postives = 151/287 (52.61%), Query Frame = 1
Query:    1 SRDVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLSTKCIRTDNCGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLREKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLP-IADHLRPFGAVGYARQSMR-EHKMTPKGEECVFMGIPRNFPTGTVSVLLVRSRNIVE 855
            S D+ E H +L H  E + +KT++   I+ T +  +CE C   KAK+ +V K T  RA   G+R FVD+ GP   + LG   Y +  VDD T    + FV K+SD +  L   V   +   +  TK +R DN GE +   ++  D++ +T E T PDTPQ NGV ER +  L+++A  +M   D +    R  LWA+A+  A D+ N S+ T +D  KS  +L+  +L  + D L  FG +GYA    + + K   K    + +G  +N    T  +   ++++I+E
Sbjct:  566 SMDINEAHDKLGHKGEVLLKKTLKHHSIKVTGELQSCEGCCLAKAKQKSVSKTTNIRAKSPGERLFVDMSGPFTATILGSR-YQIQVVDDATRKGFIGFVKKRSDLSQWLEENVLSKLEGMQKQTKYLRADNAGENKNPLEKLCDKKGMTLELTAPDTPQQNGVVERRIAVLQQRANAMMMAAD-LTPEARALLWAEALNTANDLENISLNTMSD--KSPDKLFSNELTKLMDRLVEFGRIGYATIRRKFKGKWKEKSLRVIMVGYAKNHSADTYRLYNPQNKSIIE 848          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.190e-35
Identity = 95/280 (33.93%), Postives = 140/280 (50.00%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
            D+ E H   AH  E + R T + +G +      AC  C   KA R  +  +T+ R+  +  R FVD+GG K  +S+GG  Y +I  DD T    + F+  KSD  +A  + +A        S  + +R+DN GEF  GEF    +   I  E TP  +PQYNGVAER L  + E A+    +   +   ++    +KLWA+AM +AC+  N +  ++  +  S YE+W+G+ P      PF    Y R   R  K+ PKGE C ++G  R+ P     VL
Sbjct:  186 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL 463          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.690e-35
Identity = 94/280 (33.57%), Postives = 140/280 (50.00%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLS-TKCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
            D+ E H   AH  E + R T + +G +      AC  C   KA R  + ++T+ R+  +  R FVD+GG K  +S+GG  Y +I  DD T    + F+  KSD  +A  + +A        S  + +R+DN GEF  GEF    +   I  E TP  +PQYNGVAER L  + E A+    +   +   ++    +KLWA+AM +AC+  N +  ++  +    YE+W+G+ P      PF    Y R   R  K+ PKGE C ++G  R+ P     VL
Sbjct:  131 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDHPRDCHRVL 408          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.580e-35
Identity = 94/280 (33.57%), Postives = 142/280 (50.71%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLST-KCIRTDNCGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLR----EKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFPTGTVSVL 828
            DV + H    H  E + R T + +GIE T +  AC  C   KA R A+   T   +  +  R FV++GG K  +S+GG  Y +I  DD T    + F+  KSD  +A  S +A+       S  + +R+DN GEF  GEF    +   I  E TP  +P++NGVAER L  + E A+    +   +   ++    ++LWA+AM +AC+  N +  ++  + KS YE+W+G+   A    PF    Y +   R  K+ PKGE C ++G  R+ P     VL
Sbjct:  392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQ-RPSKLLPKGESCFYVGPSRDHPRDCHRVL 669          
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.240e-33
Identity = 90/274 (32.85%), Postives = 134/274 (48.91%), Query Frame = 1
Query:    7 DVMEVHRRLAHPSEDITRKTVEMVGIETTD-QWGACETCFQVKAKRHAVPKKTEERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKSDTAAALLSLVADYITPQKLSTKC----IRTDNCGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERTLRRLREKAIILMEELDNVIN--VLREKLWAQAMLFACDVTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTPKGEECVFMGIPRNFP 807
            D+   H    H  E++ +KT +  G++ T      C  C   K +   + K T+ RA+ +  R F+++GG  ++ S+GGN Y +I  DDCT +  V F+  KSD AAA    +ADY   +  +  C     RTD  GEF+G+F     R  I  E TPP+TP+YNGVAER L  L + A+    +   +     +   LWA+A+  AC   N + TT     KS  EL+ G  P      PF       +S R+ +  P+  +   +G+P   P
Sbjct:  134 DLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96952.19146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE8.160e-3832.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE1.440e-3735.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE7.580e-3734.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE7.680e-3734.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE9.950e-3733.91Integrase catalytic domain-containing protein (Fra... [more]
B1PJ47_PHATR9.080e-3633.80Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornu... [more]
A0A6H5JRL9_9PHAE1.190e-3533.93Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE2.690e-3533.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE5.580e-3533.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE4.240e-3332.85Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96952contigF-distichus_contig96952:419..1273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score127.5
Seed ortholog evalue9.9e-27
Seed eggNOG ortholog400682.PAC_15712908
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size855
Cds size843
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.6558485-CDS-F-distichus_contig96952:418..12611622931147.6558485-CDS-F-distichus_contig96952:418..1261Fucus distichus monoicousCDSF-distichus_contig96952 419..1261 -
1690886178.844057-CDS-F-distichus_contig96952:418..12611690886178.844057-CDS-F-distichus_contig96952:418..1261Fucus distichus monoicousCDSF-distichus_contig96952 419..1261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.6773417-UTR-F-distichus_contig96952:1261..12731622931147.6773417-UTR-F-distichus_contig96952:1261..1273Fucus distichus monoicousUTRF-distichus_contig96952 1262..1273 -
1690886178.85607-UTR-F-distichus_contig96952:1261..12731690886178.85607-UTR-F-distichus_contig96952:1261..1273Fucus distichus monoicousUTRF-distichus_contig96952 1262..1273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96952.19146.1prot_F-distichus_contig96952.19146.1Fucus distichus monoicouspolypeptideF-distichus_contig96952 419..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96952.19146.1

>prot_F-distichus_contig96952.19146.1 ID=prot_F-distichus_contig96952.19146.1|Name=mRNA_F-distichus_contig96952.19146.1|organism=Fucus distichus monoicous|type=polypeptide|length=281bp
MEVHRRLAHPSEDITRKTVEMVGIETTDQWGACETCFQVKAKRHAVPKKT
EERASVRGQRFFVDVGGPKKYSSLGGNSYVVIFVDDCTHFEDVKFVNKKS
DTAAALLSLVADYITPQKLSTKCIRTDNCGEFEGEFQRELDRRSITHEHT
PPDTPQYNGVAERTLRRLREKAIILMEELDNVINVLREKLWAQAMLFACD
VTNKSVTTSTDEGKSSYELWFGKLPIADHLRPFGAVGYARQSMREHKMTP
KGEECVFMGIPRNFPTGTVSVLLVRSRNIVE
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mRNA from alignment at F-distichus_contig96952:419..1273-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96952.19146.1 ID=mRNA_F-distichus_contig96952.19146.1|Name=mRNA_F-distichus_contig96952.19146.1|organism=Fucus distichus monoicous|type=mRNA|length=855bp|location=Sequence derived from alignment at F-distichus_contig96952:419..1273- (Fucus distichus monoicous)
TCCCGTGACGTCATGGAGGTCCATCGAAGGCTTGCGCACCCGAGCGAGGA CATTACAAGAAAGACGGTCGAGATGGTGGGGATCGAGACGACGGACCAGT GGGGGGCGTGTGAGACATGCTTCCAAGTTAAGGCGAAGCGACATGCCGTG CCAAAGAAGACAGAAGAACGGGCGAGCGTGAGAGGACAGCGATTCTTCGT CGACGTGGGCGGGCCGAAGAAGTACTCGAGTCTCGGCGGGAACAGCTACG TCGTCATTTTCGTGGACGACTGCACCCATTTCGAGGATGTAAAGTTCGTA AATAAGAAGAGCGACACAGCGGCCGCTCTCTTATCTCTGGTTGCAGATTA TATTACACCGCAGAAGCTGTCAACTAAGTGCATACGGACGGATAATTGTG GCGAGTTTGAGGGAGAATTTCAGCGCGAATTGGACCGGCGCAGCATCACG CACGAGCATACCCCGCCAGACACGCCGCAGTACAATGGGGTGGCCGAACG TACGCTTAGACGTTTAAGAGAAAAGGCGATCATCCTGATGGAGGAGTTAG ACAACGTCATCAACGTGCTGCGAGAGAAACTGTGGGCTCAGGCAATGCTT TTTGCGTGCGACGTCACCAACAAGTCAGTCACAACGTCAACGGATGAGGG TAAGTCGTCGTATGAACTATGGTTTGGAAAACTCCCTATTGCCGATCATT TGCGACCGTTTGGAGCGGTGGGATACGCGCGACAGAGCATGCGTGAACAT AAGATGACGCCAAAAGGAGAAGAATGCGTATTCATGGGAATTCCCCGAAA CTTCCCCACTGGCACGGTAAGCGTGCTACTCGTAAGGTCAAGAAATATCG TGGAA
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Coding sequence (CDS) from alignment at F-distichus_contig96952:419..1273-

>mRNA_F-distichus_contig96952.19146.1 ID=mRNA_F-distichus_contig96952.19146.1|Name=mRNA_F-distichus_contig96952.19146.1|organism=Fucus distichus monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at F-distichus_contig96952:419..1273- (Fucus distichus monoicous)
ATGGAGGTCCATCGAAGGCTTGCGCACCCGAGCGAGGACATTACAAGAAA
GACGGTCGAGATGGTGGGGATCGAGACGACGGACCAGTGGGGGGCGTGTG
AGACATGCTTCCAAGTTAAGGCGAAGCGACATGCCGTGCCAAAGAAGACA
GAAGAACGGGCGAGCGTGAGAGGACAGCGATTCTTCGTCGACGTGGGCGG
GCCGAAGAAGTACTCGAGTCTCGGCGGGAACAGCTACGTCGTCATTTTCG
TGGACGACTGCACCCATTTCGAGGATGTAAAGTTCGTAAATAAGAAGAGC
GACACAGCGGCCGCTCTCTTATCTCTGGTTGCAGATTATATTACACCGCA
GAAGCTGTCAACTAAGTGCATACGGACGGATAATTGTGGCGAGTTTGAGG
GAGAATTTCAGCGCGAATTGGACCGGCGCAGCATCACGCACGAGCATACC
CCGCCAGACACGCCGCAGTACAATGGGGTGGCCGAACGTACGCTTAGACG
TTTAAGAGAAAAGGCGATCATCCTGATGGAGGAGTTAGACAACGTCATCA
ACGTGCTGCGAGAGAAACTGTGGGCTCAGGCAATGCTTTTTGCGTGCGAC
GTCACCAACAAGTCAGTCACAACGTCAACGGATGAGGGTAAGTCGTCGTA
TGAACTATGGTTTGGAAAACTCCCTATTGCCGATCATTTGCGACCGTTTG
GAGCGGTGGGATACGCGCGACAGAGCATGCGTGAACATAAGATGACGCCA
AAAGGAGAAGAATGCGTATTCATGGGAATTCCCCGAAACTTCCCCACTGG
CACGGTAAGCGTGCTACTCGTAAGGTCAAGAAATATCGTGGAAATGGAGG
TCCATCGAAGGCTTGCGCACCCGAGCGAGGACATTACAAGAAAGACGGTC
GAGATGGTGGGGATCGAGACGACGGACCAGTGGGGGGCGTGTGAGACATG
CTTCCAAGTTAAGGCGAAGCGACATGCCGTGCCAAAGAAGACAGAAGAAC
GGGCGAGCGTGAGAGGACAGCGATTCTTCGTCGACGTGGGCGGGCCGAAG
AAGTACTCGAGTCTCGGCGGGAACAGCTACGTCGTCATTTTCGTGGACGA
CTGCACCCATTTCGAGGATGTAAAGTTCGTAAATAAGAAGAGCGACACAG
CGGCCGCTCTCTTATCTCTGGTTGCAGATTATATTACACCGCAGAAGCTG
TCAACTAAGTGCATACGGACGGATAATTGTGGCGAGTTTGAGGGAGAATT
TCAGCGCGAATTGGACCGGCGCAGCATCACGCACGAGCATACCCCGCCAG
ACACGCCGCAGTACAATGGGGTGGCCGAACGTACGCTTAGACGTTTAAGA
GAAAAGGCGATCATCCTGATGGAGGAGTTAGACAACGTCATCAACGTGCT
GCGAGAGAAACTGTGGGCTCAGGCAATGCTTTTTGCGTGCGACGTCACCA
ACAAGTCAGTCACAACGTCAACGGATGAGGGTAAGTCGTCGTATGAACTA
TGGTTTGGAAAACTCCCTATTGCCGATCATTTGCGACCGTTTGGAGCGGT
GGGATACGCGCGACAGAGCATGCGTGAACATAAGATGACGCCAAAAGGAG
AAGAATGCGTATTCATGGGAATTCCCCGAAACTTCCCCACTGGCACGGTA
AGCGTGCTACTCGTAAGGTCAAGAAATATCGTGGAA
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