mRNA_F-distichus_contig9695.19145.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9695.19145.1
Unique NamemRNA_F-distichus_contig9695.19145.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9695.19145.1 vs. uniprot
Match: D7FRU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU6_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 7.980e-41
Identity = 91/193 (47.15%), Postives = 112/193 (58.03%), Query Frame = 1 
Query:    1 KQLGKRWRCTIPLWWPYRTNRRWFAAWDLLRRTLLTGLLTLVPVDEGGAERVTVACAIAGLSLVVAEVARPHRDPWIGWIYRMGGVMILLVDMLGVLQQVSSAGSATPSVATVXXXXXXXXXXXXXXXXICCGWRLSCAEQREGTFTAAAAIPWPESASYRRHPSGVGEGAGNSPDHGDNDSDQVKCSSNFPP 579
            K+  +RWR TIP+W PY+  R+ FAAW++ RR LLTG LT VP  EG   RV VACA+AG+SLVV EV RPHRDPWIGW+YR GG  ILL ++ G+ Q++ +A + +P V  V                +C GWRLSCAEQ      AAA IP  +S S    PS VG   G     GD  S   +     PP
Sbjct: 1132 KRNNRRWRSTIPVWSPYKAGRQGFAAWEIGRRLLLTGFLTAVPPGEGFM-RVAVACALAGVSLVVGEVVRPHRDPWIGWVYRGGGFAILLANLTGLAQKIGAADTGSPWV--VVSAGIFISLVLALAVCLCGGWRLSCAEQGSSAAAAAAIIPRRDSRSA--FPSVVGPSVGGDHHDGDLGSSSTRGRQKAPP 1319
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BLAST of mRNA_F-distichus_contig9695.19145.1 vs. uniprot
Match: A0A6H5KU24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU24_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.000e-40
Identity = 90/179 (50.28%), Postives = 109/179 (60.89%), Query Frame = 1 
Query:    1 KQLGKRWRCTIPLWWPYRTNRRWFAAWDLLRRTLLTGLLTLVPVDEGGAERVTVACAIAGLSLVVAEVARPHRDPWIGWIYRMGGVMILLVDMLGVLQQVSSAGSATPSVATVXXXXXXXXXXXXXXXXICCGWRLSCAEQREGTFTAAAAIPWPESASYRRHPSGVGEGAGNSPDHGD 537
            K+  +RWR TIP+W PY+  R+ FAAW+L RR LLTG LT VP  EG   RV VACA+AG+SLVV EV RPHRDPWIGW+YR GG+ ILL ++ G+ Q+  +A + +P V  V                +C GWRLSCAEQ  G+  AAAA   P   S    PS VG   G   DH D
Sbjct:  454 KRNNRRWRSTIPVWSPYKAGRQGFAAWELGRRLLLTGFLTAVPPGEGFM-RVAVACALAGVSLVVGEVVRPHRDPWIGWVYRGGGLAILLANLTGLAQKTGAADTGSPLV--VVSAGIFISLMLALAVCLCGGWRLSCAEQ--GSSAAAAAAIIPRRDSRPAFPSVVGPSVGG--DHHD 625
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9695.19145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRU6_ECTSI7.980e-4147.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU24_9PHAE5.000e-4050.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9695contigF-distichus_contig9695:9343..10865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9695.19145.1prot_F-distichus_contig9695.19145.1Fucus distichus monoicouspolypeptideF-distichus_contig9695 9343..10865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.564662-CDS-F-distichus_contig9695:9342..95911622931147.564662-CDS-F-distichus_contig9695:9342..9591Fucus distichus monoicousCDSF-distichus_contig9695 9343..9591 +
1690886178.8053896-CDS-F-distichus_contig9695:9342..95911690886178.8053896-CDS-F-distichus_contig9695:9342..9591Fucus distichus monoicousCDSF-distichus_contig9695 9343..9591 +
1622931147.5823772-CDS-F-distichus_contig9695:10100..101481622931147.5823772-CDS-F-distichus_contig9695:10100..10148Fucus distichus monoicousCDSF-distichus_contig9695 10101..10148 +
1690886178.8197339-CDS-F-distichus_contig9695:10100..101481690886178.8197339-CDS-F-distichus_contig9695:10100..10148Fucus distichus monoicousCDSF-distichus_contig9695 10101..10148 +
1622931147.602834-CDS-F-distichus_contig9695:10583..108651622931147.602834-CDS-F-distichus_contig9695:10583..10865Fucus distichus monoicousCDSF-distichus_contig9695 10584..10865 +
1690886178.8318713-CDS-F-distichus_contig9695:10583..108651690886178.8318713-CDS-F-distichus_contig9695:10583..10865Fucus distichus monoicousCDSF-distichus_contig9695 10584..10865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9695.19145.1

>prot_F-distichus_contig9695.19145.1 ID=prot_F-distichus_contig9695.19145.1|Name=mRNA_F-distichus_contig9695.19145.1|organism=Fucus distichus monoicous|type=polypeptide|length=193bp
KQLGKRWRCTIPLWWPYRTNRRWFAAWDLLRRTLLTGLLTLVPVDEGGAE
RVTVACAIAGLSLVVAEVARPHRDPWIGWIYRMGGVMILLVDMLGVLQQV
SSAGSATPSVATVTVSVIFLLFLSLMLLCICCGWRLSCAEQREGTFTAAA
AIPWPESASYRRHPSGVGEGAGNSPDHGDNDSDQVKCSSNFPP
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mRNA from alignment at F-distichus_contig9695:9343..10865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9695.19145.1 ID=mRNA_F-distichus_contig9695.19145.1|Name=mRNA_F-distichus_contig9695.19145.1|organism=Fucus distichus monoicous|type=mRNA|length=1523bp|location=Sequence derived from alignment at F-distichus_contig9695:9343..10865+ (Fucus distichus monoicous)
AAGCAACTGGGAAAGCGTTGGCGTTGTACGATTCCACTGTGGTGGCCCTA
TCGGACAAACCGACGCTGGTTTGCCGCATGGGATCTCCTAAGGCGAACTC
TTCTCACAGGGCTACTTACTCTGGTCCCGGTCGACGAGGGCGGGGCGGAA
CGGGTTACGGTAGCGTGCGCGATTGCAGGTCTGTCCCTTGTGGTAGCCGA
GGTGGCGAGGCCGCATCGAGACCCTTGGATCGGCTGGATCTATCGCATGG
TGAGGCCTGGCGTGCGTTATGAAAACTATGGCAGAGATAAGAAAGGTAGA
GATCGGCTCTAGTCGTGTTTACGGAAAAGTTATTTGATATACTACTACAG
TTTTCGTAACACTCTTGGTCAGTACTGGTATGCATCGAGAACCCTTCTCG
CTCGCTCGCGATACGATACGATCCCGACATGTCTATTATCTTTGAAGTAA
TATGCCTCACGTCCCGATCCGGAGACAAAAGGTTTAAGCTCAAGGACCCC
GCGCGGATGTTTGCTATTTGGAGAGAGCCATAGTTACCCACTATTTTTAT
ATTGATTTACCCTCTTTCATAATTTCATTGTAACAGAGTACACCGTGCCC
CATGCATTGAGCTATACTCTGCGAAATCCACATAGTAAAATCGCAATCTT
TTCAGCTGAGACGGAAATCCGCACAGTAGGAGGGTGTTTAAAGAAAATAT
TTTCTCACGATAAATTATTATACCTCCGCGTGACCATCACATTTGTTCTT
GTTCTCAGGGAGGGGTCATGATCCTCCTGGTCGACATGCTAGGTGTTCTA
CAGCAGGTACGATTCGCACGAACTTACGAAAGACCTCCAACAAATTGGGT
ACCTATTTCCAGAGTATCGCCGTTATGTCGCCTTCCTTCTAAGCGCTTTT
TGTGTCGTGATTACTCTACTCTTACCCCCGAATGACATAAAATGACGATA
AATCTGTGAAGTGGTGATAAGTGTTGAAGGCGCTCCTTCGCGCTCACTGA
AGTCTGATTTCGCCCTCGCTATAGATAACGCCTTACTCATTGTACTGCGA
TTTGTATCTCGTCTCTTGGAATTGAGCGGTATGATGTACATCGACGGGTC
AGCGAGTAAGGTATTCCGCTGAACTCCCGGAATATTACTGCATTTTTCCT
AACTCTTGAACCACCAAGTGATTGATCGTGGCACCATCCTAACACGAAAA
TGATGTCTCCCGATGCGCTTATTTTTCGACCTCCGCAACAGGTGTCGTCG
GCAGGCAGTGCAACCCCGTCCGTAGCCACGGTAACGGTCTCAGTTATTTT
TCTTTTGTTTCTATCTCTAATGCTCCTGTGCATTTGTTGTGGGTGGCGCC
TCTCTTGCGCGGAGCAGCGCGAGGGGACCTTCACAGCCGCTGCCGCCATC
CCCTGGCCCGAATCAGCCTCGTACCGAAGACATCCTTCAGGCGTAGGTGA
AGGTGCAGGCAATTCTCCAGACCATGGCGACAACGACAGCGACCAAGTCA
AGTGCTCTAGCAACTTCCCACCC
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Coding sequence (CDS) from alignment at F-distichus_contig9695:9343..10865+

>mRNA_F-distichus_contig9695.19145.1 ID=mRNA_F-distichus_contig9695.19145.1|Name=mRNA_F-distichus_contig9695.19145.1|organism=Fucus distichus monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at F-distichus_contig9695:9343..10865+ (Fucus distichus monoicous)
AAGCAACTGGGAAAGCGTTGGCGTTGTACGATTCCACTGTGGTGGCCCTA
TCGGACAAACCGACGCTGGTTTGCCGCATGGGATCTCCTAAGGCGAACTC
TTCTCACAGGGCTACTTACTCTGGTCCCGGTCGACGAGGGCGGGGCGGAA
CGGGTTACGGTAGCGTGCGCGATTGCAGGTCTGTCCCTTGTGGTAGCCGA
GGTGGCGAGGCCGCATCGAGACCCTTGGATCGGCTGGATCTATCGCATGA
AGCAACTGGGAAAGCGTTGGCGTTGTACGATTCCACTGTGGTGGCCCTAT
CGGACAAACCGACGCTGGTTTGCCGCATGGGATCTCCTAAGGCGAACTCT
TCTCACAGGGCTACTTACTCTGGTCCCGGTCGACGAGGGCGGGGCGGAAC
GGGTTACGGTAGCGTGCGCGATTGCAGGTCTGTCCCTTGTGGTAGCCGAG
GTGGCGAGGCCGCATCGAGACCCTTGGATCGGCTGGATCTATCGCATGGG
AGGGGTCATGATCCTCCTGGTCGACATGCTAGGTGTTCTACAGCAGGGAG
GGGTCATGATCCTCCTGGTCGACATGCTAGGTGTTCTACAGCAGGTGTCG
TCGGCAGGCAGTGCAACCCCGTCCGTAGCCACGGTAACGGTCTCAGTTAT
TTTTCTTTTGTTTCTATCTCTAATGCTCCTGTGCATTTGTTGTGGGTGGC
GCCTCTCTTGCGCGGAGCAGCGCGAGGGGACCTTCACAGCCGCTGCCGCC
ATCCCCTGGCCCGAATCAGCCTCGTACCGAAGACATCCTTCAGGCGTAGG
TGAAGGTGCAGGCAATTCTCCAGACCATGGCGACAACGACAGCGACCAAG
TCAAGTGCTCTAGCAACTTCCCACCCGTGTCGTCGGCAGGCAGTGCAACC
CCGTCCGTAGCCACGGTAACGGTCTCAGTTATTTTTCTTTTGTTTCTATC
TCTAATGCTCCTGTGCATTTGTTGTGGGTGGCGCCTCTCTTGCGCGGAGC
AGCGCGAGGGGACCTTCACAGCCGCTGCCGCCATCCCCTGGCCCGAATCA
GCCTCGTACCGAAGACATCCTTCAGGCGTAGGTGAAGGTGCAGGCAATTC
TCCAGACCATGGCGACAACGACAGCGACCAAGTCAAGTGCTCTAGCAACT
TCCCACCC
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