mRNA_F-distichus_contig9695.19143.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9695.19143.1
Unique NamemRNA_F-distichus_contig9695.19143.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9695.19143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9695contigF-distichus_contig9695:3329..4527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size692
Cds size690
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.4491384-CDS-F-distichus_contig9695:3328..39501622931147.4491384-CDS-F-distichus_contig9695:3328..3950Fucus distichus monoicousCDSF-distichus_contig9695 3329..3950 +
1690886178.766548-CDS-F-distichus_contig9695:3328..39501690886178.766548-CDS-F-distichus_contig9695:3328..3950Fucus distichus monoicousCDSF-distichus_contig9695 3329..3950 +
1622931147.46655-CDS-F-distichus_contig9695:4459..45271622931147.46655-CDS-F-distichus_contig9695:4459..4527Fucus distichus monoicousCDSF-distichus_contig9695 4460..4527 +
1690886178.7771628-CDS-F-distichus_contig9695:4459..45271690886178.7771628-CDS-F-distichus_contig9695:4459..4527Fucus distichus monoicousCDSF-distichus_contig9695 4460..4527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9695.19143.1prot_F-distichus_contig9695.19143.1Fucus distichus monoicouspolypeptideF-distichus_contig9695 3329..4527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9695.19143.1

>prot_F-distichus_contig9695.19143.1 ID=prot_F-distichus_contig9695.19143.1|Name=mRNA_F-distichus_contig9695.19143.1|organism=Fucus distichus monoicous|type=polypeptide|length=230bp
MISPSGQHGDKAVSAIESGRGSESVPTSTLLVVTLENGDEDNRFDRRTDG
ASWLALDASWKTRVFPLTSDALYLWVHSSPDRMESSAPTWWGQADFGRAR
SAKGEGEDDNEAAMAFQTPFTRWEKHTVLDNDRLQVEGSFYIGKTEIWDD
SDDGDGDDQAEQGRWGNRWIGEKVRNGADIDAKIERMDGDFRRQLDDYSC
PEGYRGASCTDCASGFTMGPGGACTRTEVQ
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mRNA from alignment at F-distichus_contig9695:3329..4527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9695.19143.1 ID=mRNA_F-distichus_contig9695.19143.1|Name=mRNA_F-distichus_contig9695.19143.1|organism=Fucus distichus monoicous|type=mRNA|length=1199bp|location=Sequence derived from alignment at F-distichus_contig9695:3329..4527+ (Fucus distichus monoicous)
ATGATATCGCCGTCGGGACAACATGGAGACAAAGCCGTTTCAGCAATAGA
GTCGGGACGGGGGTCAGAATCAGTGCCGACGTCAACTCTTTTAGTTGTGA
CTTTGGAGAATGGGGATGAAGATAATCGCTTCGATCGTAGAACAGATGGC
GCTTCGTGGTTAGCTCTTGACGCCTCTTGGAAAACACGAGTTTTTCCTCT
TACATCAGACGCATTGTACCTGTGGGTACATTCGTCACCAGACAGAATGG
AATCCTCCGCACCGACGTGGTGGGGTCAAGCAGATTTTGGGAGAGCGCGA
TCAGCGAAAGGTGAAGGAGAAGACGACAACGAAGCCGCCATGGCTTTCCA
GACGCCCTTCACTCGTTGGGAAAAGCACACGGTTCTCGACAATGACAGAC
TGCAAGTGGAAGGTAGCTTCTATATCGGCAAGACGGAAATATGGGACGAT
AGTGATGACGGAGATGGCGATGATCAAGCCGAGCAAGGCAGGTGGGGAAA
TAGGTGGATTGGAGAGAAGGTTAGAAATGGTGCCGACATCGATGCCAAGA
TCGAGAGGATGGACGGAGATTTTCGAAGGCAGCTCGACGACTACAGCTGT
CCTGAGGGCTATCGTGGGGCTTGTAAGTTCGATGCATCCTGTGTGGCTGG
TATTTTGAGGGTTGGTATACATAGCGATATGTACCGAGTAGCCGCCGTAA
CACCATTCCGTACTGCTGGCACAATTGCTTCGTTTACGTAGTCTCACGAG
CTACTGCTGGCACAATTGCTTTCTAGTGCTAAAAAGCTCCACGTTGGAAG
AGGGGTTGCAAATAGTTTTTTTAGTTGCGCACATTTCACCACTCAAATGC
CATCTCGCATAACTATTAATCAGTCTAAAAACTACTACCTCTAAAATACT
ATTGTACTGTATCAAGTATAAACCGACGTTGATATATCCCCTGCTTCAAA
AATTAAAGAGCACGGAGTAGTATTAATAATATTAATAGTAAATGCTACGC
CCTACAGCCTGTCGGATGGCTGACCAGTCAAATTATGCATGTACGCCACT
CTCCCTGTCTGCTCCCATTCTAACTATGGCATATATAATATTATCTTCAA
ATAAATGATTTCGCATTACTTCACCTTCCAGCCTGCACTGATTGCGCGTC
GGGCTTTACAATGGGTCCGGGTGGCGCATGCACGCGTACGGAGGTCCAA
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Coding sequence (CDS) from alignment at F-distichus_contig9695:3329..4527+

>mRNA_F-distichus_contig9695.19143.1 ID=mRNA_F-distichus_contig9695.19143.1|Name=mRNA_F-distichus_contig9695.19143.1|organism=Fucus distichus monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at F-distichus_contig9695:3329..4527+ (Fucus distichus monoicous)
ATGATATCGCCGTCGGGACAACATGGAGACAAAGCCGTTTCAGCAATAGA
GTCGGGACGGGGGTCAGAATCAGTGCCGACGTCAACTCTTTTAGTTGTGA
CTTTGGAGAATGGGGATGAAGATAATCGCTTCGATCGTAGAACAGATGGC
GCTTCGTGGTTAGCTCTTGACGCCTCTTGGAAAACACGAGTTTTTCCTCT
TACATCAGACGCATTGTACCTGTGGGTACATTCGTCACCAGACAGAATGG
AATCCTCCGCACCGACGTGGTGGGGTCAAGCAGATTTTGGGAGAGCGCGA
TCAGCGAAAGGTGAAGGAGAAGACGACAACGAAGCCGCCATGGCTTTCCA
GACGCCCTTCACTCGTTGGGAAAAGCACACGGTTCTCGACAATGACAGAC
TGCAAGTGGAAGGTAGCTTCTATATCGGCAAGACGGAAATATGGGACGAT
AGTGATGACGGAGATGGCGATGATCAAGCCGAGCAAGGCAGGTGGGGAAA
TAGGTGGATTGGAGAGAAGGTTAGAAATGGTGCCGACATCGATGCCAAGA
TCGAGAGGATGGACGGAGATTTTCGAAGGCAGCTCGACGACTACAGCTGT
CCTGAGGGCTATCGTGGGGCTTATGATATCGCCGTCGGGACAACATGGAG
ACAAAGCCGTTTCAGCAATAGAGTCGGGACGGGGGTCAGAATCAGTGCCG
ACGTCAACTCTTTTAGTTGTGACTTTGGAGAATGGGGATGAAGATAATCG
CTTCGATCGTAGAACAGATGGCGCTTCGTGGTTAGCTCTTGACGCCTCTT
GGAAAACACGAGTTTTTCCTCTTACATCAGACGCATTGTACCTGTGGGTA
CATTCGTCACCAGACAGAATGGAATCCTCCGCACCGACGTGGTGGGGTCA
AGCAGATTTTGGGAGAGCGCGATCAGCGAAAGGTGAAGGAGAAGACGACA
ACGAAGCCGCCATGGCTTTCCAGACGCCCTTCACTCGTTGGGAAAAGCAC
ACGGTTCTCGACAATGACAGACTGCAAGTGGAAGGTAGCTTCTATATCGG
CAAGACGGAAATATGGGACGATAGTGATGACGGAGATGGCGATGATCAAG
CCGAGCAAGGCAGGTGGGGAAATAGGTGGATTGGAGAGAAGGTTAGAAAT
GGTGCCGACATCGATGCCAAGATCGAGAGGATGGACGGAGATTTTCGAAG
GCAGCTCGACGACTACAGCTGTCCTGAGGGCTATCGTGGGGCTTCCTGCA
CTGATTGCGCGTCGGGCTTTACAATGGGTCCGGGTGGCGCATGCACGCGT
ACGGAGGTCCAACCTGCACTGATTGCGCGTCGGGCTTTACAATGGGTCCG
GGTGGCGCATGCACGCGTACGGAGGTCCAA
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