mRNA_F-distichus_contig9683.19134.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9683.19134.1
Unique NamemRNA_F-distichus_contig9683.19134.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: D8LQF2_ECTSI (GTR1, Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.140e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSDV 153
            HVRFLGDMVLNLWDCGGQDSFYETYF+ QQ++IFRSVEVLIYVFDV S DV
Sbjct:   45 HVRFLGDMVLNLWDCGGQDSFYETYFNYQQEFIFRSVEVLIYVFDVMSDDV 95
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: A0A6A4ZH25_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZH25_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.460e-20
Identity = 38/50 (76.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSD 150
            HVRFLG++VLNLWDCGGQD+FYE YF  Q+D+IFRSVE+LIYVFD+ES +
Sbjct:   44 HVRFLGNLVLNLWDCGGQDAFYENYFESQRDHIFRSVELLIYVFDIESRE 93
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: W7TTY0_9STRA (Ras-related gtp-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTY0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.900e-20
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSD 150
            HVRFLG++VLNLWDCGGQD+FYE+YF  Q+D IFRSVEVLIYVFDVES+D
Sbjct:   45 HVRFLGNLVLNLWDCGGQDAFYESYFDSQRDLIFRSVEVLIYVFDVESAD 94
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: A0A8C8DCS2_9TELE (Ras-related GTP-binding protein n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C8DCS2_9TELE)

HSP 1 Score: 84.7 bits (208), Expect = 6.220e-20
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSD 150
            HVRFLG++VLNLWDCGGQD+F E YF+ Q+D IFR+VEVLIYVFDVES D
Sbjct:   49 HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRD 98
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: D0MTF8_PHYIT (Ras-related GTP-binding protein, putative n=11 Tax=Peronosporaceae TaxID=4777 RepID=D0MTF8_PHYIT)

HSP 1 Score: 87.8 bits (216), Expect = 8.930e-20
Identity = 38/51 (74.51%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSDV 153
            HVRFLG++VLNLWDCGGQD+FYE YF  Q+D+IFRSVE+LIYVFD+ES ++
Sbjct:   13 HVRFLGNLVLNLWDCGGQDAFYENYFESQRDHIFRSVELLIYVFDIESREI 63
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: H3GWU9_PHYRM (Uncharacterized protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=H3GWU9_PHYRM)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-19
Identity = 38/51 (74.51%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSDV 153
            HVRFLG++VLNLWDCGGQD+FYE YF  Q+D+IFRSVE+LIYVFD+ES ++
Sbjct:   34 HVRFLGNLVLNLWDCGGQDAFYENYFESQRDHIFRSVELLIYVFDIESREI 84
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: F0VZ80_9STRA (Rasrelated GTPbinding protein putative n=14 Tax=Oomycota TaxID=4762 RepID=F0VZ80_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.400e-19
Identity = 38/51 (74.51%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSDV 153
            HVRFLG++VLNLWDCGGQD+FYE YF  Q+D+IFRSVE+LIYVFD+ES ++
Sbjct:   44 HVRFLGNLVLNLWDCGGQDAFYENYFESQRDHIFRSVELLIYVFDIESREI 94
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: A0A3B4A5B0_9GOBI (Ras-related GTP-binding protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4A5B0_9GOBI)

HSP 1 Score: 83.2 bits (204), Expect = 1.440e-19
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSD 150
            HVRFLG++VLNLWDCGGQD+F E YF+ Q+D IFR+VEVLIYVFDVES +
Sbjct:   49 HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRE 98
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: A0A2D4G1Q0_MICCO (Ras-related GTP-binding protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4G1Q0_MICCO)

HSP 1 Score: 83.2 bits (204), Expect = 1.830e-19
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSD 150
            HVRFLG++VLNLWDCGGQD+F E YF+ Q+D IFR+VEVLIYVFDVES +
Sbjct:   41 HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRE 90
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BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Match: A0A433CZP8_9FUNG (GTP-binding protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CZP8_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 2.250e-19
Identity = 37/51 (72.55%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HVRFLGDMVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSDV 153
            HVRFLG++VLNLWDCGGQ++F E YF+ Q+D+IFR+VEVLIYVFDVES ++
Sbjct:   46 HVRFLGNLVLNLWDCGGQEAFMENYFASQRDHIFRNVEVLIYVFDVESREI 96
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9683.19134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF2_ECTSI1.140e-2288.24GTR1, Ras superfamily GTPase n=2 Tax=Ectocarpus Ta... [more]
A0A6A4ZH25_9STRA1.460e-2076.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W7TTY0_9STRA1.900e-2082.00Ras-related gtp-binding protein n=2 Tax=Monodopsid... [more]
A0A8C8DCS2_9TELE6.220e-2078.00Ras-related GTP-binding protein n=1 Tax=Oryzias si... [more]
D0MTF8_PHYIT8.930e-2074.51Ras-related GTP-binding protein, putative n=11 Tax... [more]
H3GWU9_PHYRM1.220e-1974.51Uncharacterized protein n=14 Tax=Peronosporaceae T... [more]
F0VZ80_9STRA1.400e-1974.51Rasrelated GTPbinding protein putative n=14 Tax=Oo... [more]
A0A3B4A5B0_9GOBI1.440e-1976.00Ras-related GTP-binding protein n=1 Tax=Periophtha... [more]
A0A2D4G1Q0_MICCO1.830e-1976.00Ras-related GTP-binding protein (Fragment) n=1 Tax... [more]
A0A433CZP8_9FUNG2.250e-1972.55GTP-binding protein n=1 Tax=Jimgerdemannia flammic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9683contigF-distichus_contig9683:105..677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog2880.D8LQF2
Preferred nameRRAGB
KEGG koko:K16185
KEGG Pathwayko04140,ko04150,map04140,map04150
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001101,GO:0001558,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006360,GO:0006383,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006950,GO:0006995,GO:0006996,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0012505,GO:0015698,GO:0016020,GO:0016032,GO:0016043,GO:0016070,GO:0016241,GO:0016458,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019048,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030307,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031410,GO:0031625,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032006,GO:0032007,GO:0032008,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034448,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035821,GO:0036094,GO:0036211,GO:0040008,GO:0040014,GO:0040018,GO:0040029,GO:0042221,GO:0042268,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043562,GO:0044003,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045814,GO:0045892,GO:0045919,GO:0045927,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051219,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051817,GO:0060255,GO:0065007,GO:0070647,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0072657,GO:0072665,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1903432,GO:1903506,GO:1903507,GO:1903778,GO:1904262,GO:1904263,GO:1990131,GO:1990253,GO:1990928,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.interleukin-4 receptor binding
EggNOG OGsKOG3886@1,KOG3886@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size153
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9683.19134.1prot_F-distichus_contig9683.19134.1Fucus distichus monoicouspolypeptideF-distichus_contig9683 105..656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.5060272-CDS-F-distichus_contig9683:104..1431622931146.5060272-CDS-F-distichus_contig9683:104..143Fucus distichus monoicousCDSF-distichus_contig9683 105..143 -
1690886178.303984-CDS-F-distichus_contig9683:104..1431690886178.303984-CDS-F-distichus_contig9683:104..143Fucus distichus monoicousCDSF-distichus_contig9683 105..143 -
1622931146.5262005-CDS-F-distichus_contig9683:563..6561622931146.5262005-CDS-F-distichus_contig9683:563..656Fucus distichus monoicousCDSF-distichus_contig9683 564..656 -
1690886178.323541-CDS-F-distichus_contig9683:563..6561690886178.323541-CDS-F-distichus_contig9683:563..656Fucus distichus monoicousCDSF-distichus_contig9683 564..656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.545234-UTR-F-distichus_contig9683:656..6771622931146.545234-UTR-F-distichus_contig9683:656..677Fucus distichus monoicousUTRF-distichus_contig9683 657..677 -
1690886178.3403435-UTR-F-distichus_contig9683:656..6771690886178.3403435-UTR-F-distichus_contig9683:656..677Fucus distichus monoicousUTRF-distichus_contig9683 657..677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9683.19134.1

>prot_F-distichus_contig9683.19134.1 ID=prot_F-distichus_contig9683.19134.1|Name=mRNA_F-distichus_contig9683.19134.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
MVLNLWDCGGQDSFYETYFSVQQDYIFRSVEVLIYVFDVESSDV
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mRNA from alignment at F-distichus_contig9683:105..677-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9683.19134.1 ID=mRNA_F-distichus_contig9683.19134.1|Name=mRNA_F-distichus_contig9683.19134.1|organism=Fucus distichus monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at F-distichus_contig9683:105..677- (Fucus distichus monoicous)
CACGTCAGGTTCCTCGGGGACATGGTGCTGAACCTTTGGGACTGCGGAGG
TCAGGATTCGTTCTACGAGACATACTTCAGCGTCCAGCAAGATTACATCT
TTCGTTCTGTCGAGGTGCTTCACAATCAAGGATTTTTTTTTCGTGGATGC
CTCAAATCCGTTCGCTGAGCCCAGATTGGGCGAATCGAATCAATAGCAAC
AATGACTTATTTGCCCCGTGTGAAGTTTGGGCCATCATCCTCGGGTACCA
GGGCGCCATGCCCGAAGCCGCAAGAACTAGTCCGACCGTTAACAAATCAG
GAATGCCTTCATCCATTATTTCGACCAATCATTGGCTAGGACTTGATCAA
TCTTGCCGCTTGCAATACTGCTGTAGAGCGAGATGTACTACTTGTACCAA
GCTTGTGTCACTCAAAATCGAGTCATGTCATGGAGCACCGTTCTACTGCC
ATTTCAAGGAGAAAAAAAATGTTGGTGATCGAGCGCCGCTCCTTGCGTCC
TTTTTGTCACCGCCCCGCTCTCTCCGATCGAAAGGTGTTGATATACGTGT
TCGACGTTGAGAGCAGCGATGTT
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Coding sequence (CDS) from alignment at F-distichus_contig9683:105..677-

>mRNA_F-distichus_contig9683.19134.1 ID=mRNA_F-distichus_contig9683.19134.1|Name=mRNA_F-distichus_contig9683.19134.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig9683:105..677- (Fucus distichus monoicous)
ATGGTGCTGAACCTTTGGGACTGCGGAGGTCAGGATTCGTTCTACGAGAC
ATACTTCAGCGTCCAGCAAGATTACATCTTTCGTTCTGTCGAGATGGTGC
TGAACCTTTGGGACTGCGGAGGTCAGGATTCGTTCTACGAGACATACTTC
AGCGTCCAGCAAGATTACATCTTTCGTTCTGTCGAGGTGTTGATATACGT
GTTCGACGTTGAGAGCAGCGATGTTGTGTTGATATACGTGTTCGACGTTG
AGAGCAGCGATGTT
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