mRNA_F-distichus_contig96755.19129.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96755.19129.1
Unique NamemRNA_F-distichus_contig96755.19129.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A6H5KY43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY43_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.790e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 SAIRDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTRG 153
            +A+RDPCGALVLFNYP FFR ++PT N G P    P+DLA LD++RDR RG
Sbjct:  437 AAVRDPCGALVLFNYPKFFRKLSPTDNAGTPDTTAPVDLAVLDIHRDRARG 487          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A1X6NXY9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXY9_PORUM)

HSP 1 Score: 63.2 bits (152), Expect = 2.910e-10
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   16 PCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTRG 153
            PCG L LFNYP   R++ PT ++G P    P+DLAALD+YRDR RG
Sbjct:  496 PCGTLSLFNYPAALRTLVPTDDDGSPRVGRPVDLAALDIYRDRERG 541          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A2V3II02_9FLOR (Alpha-dioxygenase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II02_9FLOR)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-8
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 SAIRDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTRGETN 162
            S +  PCG L LFNYP   R +APT    + LPD  +DLA+LD+YRDR R   N
Sbjct:   26 SIVSYPCGNLDLFNYPRALRDLAPTDEFRLALPDH-VDLASLDLYRDRERDVRN 78          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A833V9T6_9POAL (Fatty acid alpha-dioxygenase n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833V9T6_9POAL)

HSP 1 Score: 56.2 bits (134), Expect = 8.110e-8
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
               CGAL L+NYP FFR V P   +G   PD  IDLAAL+VYRDR R
Sbjct:  438 HQACGALELWNYPVFFRDVIPQNVDGTSRPDH-IDLAALEVYRDRER 483          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: UPI000D62A392 (alpha-dioxygenase 1-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62A392)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-7
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
               CGAL L+NYPT+ R++ P   +G   PD  IDLA+LD+YRDR R
Sbjct:  419 HQACGALELYNYPTWLRNIVPQNLDGTDRPDH-IDLASLDIYRDRER 464          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A103YHB5_CYNCS (Heme peroxidase n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YHB5_CYNCS)

HSP 1 Score: 55.1 bits (131), Expect = 2.090e-7
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
               CGAL L+NYPT+ R++ P   +G   PD  IDLA+LD+YRDR R
Sbjct:  110 HQACGALELYNYPTWLRNIVPQNLDGTDRPDH-IDLASLDIYRDRER 155          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A251SJY7_HELAN (Putative heme peroxidase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SJY7_HELAN)

HSP 1 Score: 53.9 bits (128), Expect = 5.300e-7
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
               CGAL LFNYP + R +AP   +G   PD  IDLA+L++YRDR R
Sbjct:  341 HQACGALELFNYPVWLRKIAPQNVDGTDRPDH-IDLASLEIYRDRER 386          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: UPI000B90050C (alpha-dioxygenase 1 isoform X1 n=2 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B90050C)

HSP 1 Score: 53.9 bits (128), Expect = 5.310e-7
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
               CGAL LFNYP + R +AP   +G   PD  IDLA+L++YRDR R
Sbjct:  432 HQACGALELFNYPVWLRKIAPQNVDGTDRPDH-IDLASLEIYRDRER 477          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A2G5F2G1_AQUCA (Uncharacterized protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F2G1_AQUCA)

HSP 1 Score: 53.9 bits (128), Expect = 5.310e-7
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
              P GAL LFNYP F R + P   +G   PD  +DLAAL+VYRDR R
Sbjct:  444 HQPSGALELFNYPMFLRDIIPQDRDGKDRPDH-VDLAALEVYRDRER 489          
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Match: A0A251SJS5_HELAN (Putative peroxidase superfamily protein n=5 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SJS5_HELAN)

HSP 1 Score: 53.9 bits (128), Expect = 5.310e-7
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   10 RDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR 150
               CGAL LFNYP + R + P   +G   PD  IDLA+LD+YRDR R
Sbjct:  449 HQACGALELFNYPVWLRDIVPQNVDGTDRPDH-IDLASLDIYRDRER 494          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96755.19129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY43_9PHAE2.790e-1564.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6NXY9_PORUM2.910e-1058.70Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2V3II02_9FLOR1.210e-851.85Alpha-dioxygenase 1 n=1 Tax=Gracilariopsis chorda ... [more]
A0A833V9T6_9POAL8.110e-859.57Fatty acid alpha-dioxygenase n=2 Tax=Carex littled... [more]
UPI000D62A3922.070e-753.19alpha-dioxygenase 1-like n=1 Tax=Cynara cardunculu... [more]
A0A103YHB5_CYNCS2.090e-753.19Heme peroxidase n=1 Tax=Cynara cardunculus var. sc... [more]
A0A251SJY7_HELAN5.300e-753.19Putative heme peroxidase n=1 Tax=Helianthus annuus... [more]
UPI000B90050C5.310e-753.19alpha-dioxygenase 1 isoform X1 n=2 Tax=Helianthus ... [more]
A0A2G5F2G1_AQUCA5.310e-755.32Uncharacterized protein n=2 Tax=Aquilegia coerulea... [more]
A0A251SJS5_HELAN5.310e-753.19Putative peroxidase superfamily protein n=5 Tax=He... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96755contigF-distichus_contig96755:198..359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.81585-CDS-F-distichus_contig96755:197..3591622931145.81585-CDS-F-distichus_contig96755:197..359Fucus distichus monoicousCDSF-distichus_contig96755 198..359 -
1690886177.9548295-CDS-F-distichus_contig96755:197..3591690886177.9548295-CDS-F-distichus_contig96755:197..359Fucus distichus monoicousCDSF-distichus_contig96755 198..359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96755.19129.1prot_F-distichus_contig96755.19129.1Fucus distichus monoicouspolypeptideF-distichus_contig96755 198..359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96755.19129.1

>prot_F-distichus_contig96755.19129.1 ID=prot_F-distichus_contig96755.19129.1|Name=mRNA_F-distichus_contig96755.19129.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp
SAIRDPCGALVLFNYPTFFRSVAPTTNEGIPLPDEPIDLAALDVYRDRTR
GETN
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mRNA from alignment at F-distichus_contig96755:198..359-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96755.19129.1 ID=mRNA_F-distichus_contig96755.19129.1|Name=mRNA_F-distichus_contig96755.19129.1|organism=Fucus distichus monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at F-distichus_contig96755:198..359- (Fucus distichus monoicous)
TCCGCCATCCGAGACCCCTGCGGAGCCCTCGTCCTCTTCAACTACCCTAC ATTTTTCCGATCCGTGGCCCCGACCACGAACGAGGGAATTCCTCTGCCTG ATGAACCCATCGATTTGGCGGCGCTTGACGTGTACAGGGATCGCACACGC GGTGAGACGAAC
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Coding sequence (CDS) from alignment at F-distichus_contig96755:198..359-

>mRNA_F-distichus_contig96755.19129.1 ID=mRNA_F-distichus_contig96755.19129.1|Name=mRNA_F-distichus_contig96755.19129.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig96755:198..359- (Fucus distichus monoicous)
TCCGCCATCCGAGACCCCTGCGGAGCCCTCGTCCTCTTCAACTACCCTAC
ATTTTTCCGATCCGTGGCCCCGACCACGAACGAGGGAATTCCTCTGCCTG
ATGAACCCATCGATTTGGCGGCGCTTGACGTGTACAGGGATCGCACACGC
GGTGAGACGAACTCCGCCATCCGAGACCCCTGCGGAGCCCTCGTCCTCTT
CAACTACCCTACATTTTTCCGATCCGTGGCCCCGACCACGAACGAGGGAA
TTCCTCTGCCTGATGAACCCATCGATTTGGCGGCGCTTGACGTGTACAGG
GATCGCACACGCGGTGAGACGAAC
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