mRNA_F-distichus_contig96751.19128.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96751.19128.1
Unique NamemRNA_F-distichus_contig96751.19128.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96751.19128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96751contigF-distichus_contig96751:624..1235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.7461216-UTR-F-distichus_contig96751:623..7461622931145.7461216-UTR-F-distichus_contig96751:623..746Fucus distichus monoicousUTRF-distichus_contig96751 624..746 +
1690886177.9303913-UTR-F-distichus_contig96751:623..7461690886177.9303913-UTR-F-distichus_contig96751:623..746Fucus distichus monoicousUTRF-distichus_contig96751 624..746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.7722359-CDS-F-distichus_contig96751:746..12351622931145.7722359-CDS-F-distichus_contig96751:746..1235Fucus distichus monoicousCDSF-distichus_contig96751 747..1235 +
1690886177.9417214-CDS-F-distichus_contig96751:746..12351690886177.9417214-CDS-F-distichus_contig96751:746..1235Fucus distichus monoicousCDSF-distichus_contig96751 747..1235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96751.19128.1prot_F-distichus_contig96751.19128.1Fucus distichus monoicouspolypeptideF-distichus_contig96751 747..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96751.19128.1

>prot_F-distichus_contig96751.19128.1 ID=prot_F-distichus_contig96751.19128.1|Name=mRNA_F-distichus_contig96751.19128.1|organism=Fucus distichus monoicous|type=polypeptide|length=163bp
MESLATINSNGVPTMHKDIEESPSPAADTNGNLAASCASPSPSDGSSAPE
ATSAPAPSAITDAVTNTDKSSTPLADTISGVIHTGEPKPAGGSTSKNKKK
KKKKVSSASSGTSAPVPEAPTPRTSSGGTENGDSREDMSVRAETSTAGGA
RGDQRELGRADSG
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mRNA from alignment at F-distichus_contig96751:624..1235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96751.19128.1 ID=mRNA_F-distichus_contig96751.19128.1|Name=mRNA_F-distichus_contig96751.19128.1|organism=Fucus distichus monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at F-distichus_contig96751:624..1235+ (Fucus distichus monoicous)
GCCTGCCATATCTGTTACAGAGCCATGATGTCCGTCGCAGCCAAATGAGT
CGAGCGATTGCGACCAAACTCGAGGAACTTGAGCGTGAGAAGTAGGTTCC
AGCCGGCGCTTCGGACGGATATAATGGAATCATTGGCAACAATAAATTCC
AACGGAGTACCCACGATGCACAAGGATATAGAAGAAAGCCCGTCGCCGGC
GGCGGACACGAACGGGAACCTCGCGGCCTCGTGTGCTTCCCCTTCCCCCT
CAGACGGCAGCTCTGCTCCCGAGGCAACCAGCGCTCCAGCTCCTTCCGCC
ATTACTGATGCAGTCACCAACACTGATAAATCTTCCACGCCTTTAGCTGA
CACTATATCTGGTGTTATTCATACCGGCGAGCCGAAGCCAGCCGGCGGGA
GCACTAGTAAGAACAAAAAGAAGAAGAAGAAGAAGGTCTCCTCTGCCTCC
TCGGGAACATCGGCACCAGTACCAGAAGCACCAACACCACGAACGTCATC
AGGAGGGACTGAAAATGGGGATTCAAGGGAAGATATGTCGGTGAGAGCTG
AGACCTCTACAGCAGGCGGGGCGCGGGGCGATCAACGAGAACTTGGCAGG
GCTGACAGCGGG
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Coding sequence (CDS) from alignment at F-distichus_contig96751:624..1235+

>mRNA_F-distichus_contig96751.19128.1 ID=mRNA_F-distichus_contig96751.19128.1|Name=mRNA_F-distichus_contig96751.19128.1|organism=Fucus distichus monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at F-distichus_contig96751:624..1235+ (Fucus distichus monoicous)
ATGGAATCATTGGCAACAATAAATTCCAACGGAGTACCCACGATGCACAA
GGATATAGAAGAAAGCCCGTCGCCGGCGGCGGACACGAACGGGAACCTCG
CGGCCTCGTGTGCTTCCCCTTCCCCCTCAGACGGCAGCTCTGCTCCCGAG
GCAACCAGCGCTCCAGCTCCTTCCGCCATTACTGATGCAGTCACCAACAC
TGATAAATCTTCCACGCCTTTAGCTGACACTATATCTGGTGTTATTCATA
CCGGCGAGCCGAAGCCAGCCGGCGGGAGCACTAGTAAGAACAAAAAGAAG
AAGAAGAAGAAGGTCTCCTCTGCCTCCTCGGGAACATCGGCACCAGTACC
AGAAGCACCAACACCACGAACGTCATCAGGAGGGACTGAAAATGGGGATT
CAAGGGAAGATATGTCGGTGAGAGCTGAGACCTCTACAGCAGGCGGGGCG
CGGGGCGATCAACGAGAACTTGGCAGGGCTGACAGCGGGATGGAATCATT
GGCAACAATAAATTCCAACGGAGTACCCACGATGCACAAGGATATAGAAG
AAAGCCCGTCGCCGGCGGCGGACACGAACGGGAACCTCGCGGCCTCGTGT
GCTTCCCCTTCCCCCTCAGACGGCAGCTCTGCTCCCGAGGCAACCAGCGC
TCCAGCTCCTTCCGCCATTACTGATGCAGTCACCAACACTGATAAATCTT
CCACGCCTTTAGCTGACACTATATCTGGTGTTATTCATACCGGCGAGCCG
AAGCCAGCCGGCGGGAGCACTAGTAAGAACAAAAAGAAGAAGAAGAAGAA
GGTCTCCTCTGCCTCCTCGGGAACATCGGCACCAGTACCAGAAGCACCAA
CACCACGAACGTCATCAGGAGGGACTGAAAATGGGGATTCAAGGGAAGAT
ATGTCGGTGAGAGCTGAGACCTCTACAGCAGGCGGGGCGCGGGGCGATCA
ACGAGAACTTGGCAGGGCTGACAGCGGG
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