mRNA_F-distichus_contig96586.19116.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96586.19116.1
Unique NamemRNA_F-distichus_contig96586.19116.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A7S1ZRT7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRT7_TRICV)

HSP 1 Score: 72.0 bits (175), Expect = 7.180e-15
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            V+ E+R+SLLR ALCV+YTP +EHFGIVP+EAM +G+PV+AVDSG
Sbjct:    4 VSDEDRASLLRNALCVVYTPEREHFGIVPLEAMYAGSPVIAVDSG 48
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: D7G9B9_ECTSI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9B9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.480e-14
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 SRVTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            + V  + R+ LLRQA CVLYTPS+EHFGIVPVEAMC GAPV+AV+SG
Sbjct:  363 TNVADDARAELLRQASCVLYTPSREHFGIVPVEAMCCGAPVIAVNSG 409
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A7S4JC65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JC65_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.740e-12
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            V+  ER+ LLR ALCV YTP +EHFGIVP+EAM +G+PVVAV SG
Sbjct:   34 VSDAERARLLRSALCVAYTPHREHFGIVPLEAMYAGSPVVAVKSG 78
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A835YXC3_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.880e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            +++ ERS LLR+A CVLYTP +EHFGIVP+EAM +GAPVVAV SG
Sbjct:  264 LSNAERSQLLREASCVLYTPDREHFGIVPLEAMYAGAPVVAVASG 308
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A7S2MEI2_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MEI2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.420e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            V   +RSSLL+ ALCV+YTP +EHFGIVP+EAM +G+PV+AV+SG
Sbjct:  112 VNDTQRSSLLKNALCVVYTPHREHFGIVPLEAMYAGSPVIAVNSG 156
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A7S4JCA0_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JCA0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.280e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            V+  ER+ LLR ALCV YTP +EHFGIVP+EAM +G+PVVAV SG
Sbjct:  430 VSDAERARLLRSALCVAYTPHREHFGIVPLEAMYAGSPVVAVKSG 474
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A7S2PIA3_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PIA3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.480e-11
Identity = 28/45 (62.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            ++ E R++LL++ALCV YTP +EHFGIVP+EAM +G+PV+AV+SG
Sbjct:  347 ISDEYRATLLQEALCVCYTPHREHFGIVPLEAMYAGSPVIAVNSG 391
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A7S4AQ98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AQ98_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.980e-11
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            ++ +ER+ L + ALCV+YTP +EHFGIVP+EAM +G PV+AV+SG
Sbjct:   50 ISDKERADLFQTALCVVYTPDKEHFGIVPLEAMYAGTPVLAVNSG 94
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: C1FD73_MICCC (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FD73_MICCC)

HSP 1 Score: 64.3 bits (155), Expect = 8.280e-11
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    7 VTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            ++SEE+  LL Q LCVLYTP  EHFGIVP+EAM +G PV+A +SG
Sbjct:  301 ISSEEKEMLLSQCLCVLYTPVNEHFGIVPLEAMAAGKPVLACNSG 345
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BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Match: A0A6P5WMD9_DURZI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5WMD9_DURZI)

HSP 1 Score: 63.9 bits (154), Expect = 1.090e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   10 TSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG 141
            ++EER+SLL Q LCVLYTP+ EHFGIVP+EAM +  PV+A +SG
Sbjct:  255 STEERNSLLSQCLCVLYTPTDEHFGIVPLEAMAAYKPVIACNSG 298
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96586.19116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1ZRT7_TRICV7.180e-1571.11Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
D7G9B9_ECTSI2.480e-1472.34Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ect... [more]
A0A7S4JC65_9STRA2.740e-1268.89Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A835YXC3_9STRA4.880e-1271.11Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Tri... [more]
A0A7S2MEI2_9STRA6.420e-1266.67Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Hel... [more]
A0A7S4JCA0_9STRA3.280e-1168.89Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) ... [more]
A0A7S2PIA3_9STRA4.480e-1162.22Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Lep... [more]
A0A7S4AQ98_9STRA4.980e-1160.00Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
C1FD73_MICCC8.280e-1164.44Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Mic... [more]
A0A6P5WMD9_DURZI1.090e-1065.91Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Dur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96586contigF-distichus_contig96586:1687..1829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7G9B9
Preferred nameALG2
KEGG rclassRC00005,RC00028,RC02748
KEGG koko:K00695,ko:K03843,ko:K12188,ko:K20296
KEGG ReactionR00806,R05973,R06238
KEGG Pathwayko00500,ko00510,ko00513,ko01100,ko04144,map00500,map00510,map00513,map01100,map04144
KEGG ModuleM00055,M00410
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000009,GO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0004376,GO:0004378,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015629,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033164,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0047485,GO:0048306,GO:0048471,GO:0050896,GO:0051592,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sucrose synthase activity
EggNOG OGsCOG0438@1,KOG0853@2759
EC2.4.1.13,2.4.1.132,2.4.1.257
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04131,ko04147
Exons1
Model size143
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.8817022-CDS-F-distichus_contig96586:1688..18291622931143.8817022-CDS-F-distichus_contig96586:1688..1829Fucus distichus monoicousCDSF-distichus_contig96586 1689..1829 -
1690886176.9654295-CDS-F-distichus_contig96586:1688..18291690886176.9654295-CDS-F-distichus_contig96586:1688..1829Fucus distichus monoicousCDSF-distichus_contig96586 1689..1829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96586.19116.1prot_F-distichus_contig96586.19116.1Fucus distichus monoicouspolypeptideF-distichus_contig96586 1689..1829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96586.19116.1

>prot_F-distichus_contig96586.19116.1 ID=prot_F-distichus_contig96586.19116.1|Name=mRNA_F-distichus_contig96586.19116.1|organism=Fucus distichus monoicous|type=polypeptide|length=47bp
SRVTSEERSSLLRQALCVLYTPSQEHFGIVPVEAMCSGAPVVAVDSG
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mRNA from alignment at F-distichus_contig96586:1687..1829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96586.19116.1 ID=mRNA_F-distichus_contig96586.19116.1|Name=mRNA_F-distichus_contig96586.19116.1|organism=Fucus distichus monoicous|type=mRNA|length=143bp|location=Sequence derived from alignment at F-distichus_contig96586:1687..1829- (Fucus distichus monoicous)
TCTCGTGTGACCTCAGAGGAGCGATCGTCCCTGCTGCGACAGGCTCTGTG
CGTGCTTTATACTCCTTCGCAGGAGCACTTTGGCATCGTTCCGGTGGAGG
CCATGTGTTCGGGCGCACCTGTGGTGGCGGTGGACTCAGGCGA
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Coding sequence (CDS) from alignment at F-distichus_contig96586:1687..1829-

>mRNA_F-distichus_contig96586.19116.1 ID=mRNA_F-distichus_contig96586.19116.1|Name=mRNA_F-distichus_contig96586.19116.1|organism=Fucus distichus monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at F-distichus_contig96586:1687..1829- (Fucus distichus monoicous)
TCTCGTGTGACCTCAGAGGAGCGATCGTCCCTGCTGCGACAGGCTCTGTG
CGTGCTTTATACTCCTTCGCAGGAGCACTTTGGCATCGTTCCGGTGGAGG
CCATGTGTTCGGGCGCACCTGTGGTGGCGGTGGACTCAGGCTCTCGTGTG
ACCTCAGAGGAGCGATCGTCCCTGCTGCGACAGGCTCTGTGCGTGCTTTA
TACTCCTTCGCAGGAGCACTTTGGCATCGTTCCGGTGGAGGCCATGTGTT
CGGGCGCACCTGTGGTGGCGGTGGACTCAGGC
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