mRNA_F-distichus_contig9651.19109.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9651.19109.1
Unique NamemRNA_F-distichus_contig9651.19109.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9651.19109.1 vs. uniprot
Match: D8LNR2_ECTSI (Zinc finger, C2H2 type family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.810e-14
Identity = 82/192 (42.71%), Postives = 98/192 (51.04%), Query Frame = 1 
Query:  769 GRG--KREGYRSQMTPNPSRGSFKL-HRGAVTGIGGVKWKSGPTGEE-VAVDKHQLRRNLTLLKKKMHSAQTGTFADRRRSQSAGSRSGELSGDPDGADVIKA-VDRRYPGYGGGHQHLHPPHTTSGTAPAVMSTMSKSTMPMSTTPISVMLEASCRDGFSMAREPR-VDGQSRPPA--EGPGSPYTVDSSS 1320
            GRG   R GYR+QM P+PS G+    +RG     GG      P  E  V  +K QLRRNL+LLKKKMH  Q G+    RRSQSAG R+GEL GDP+ A      VD    G  GG QHLH    T+GTAPA+M             P         RD    A   R V G +R     +GPGSPY +D ++
Sbjct:  502 GRGGAPRLGYRTQMMPSPSTGNLTAAYRGGGDRFGGDDEGMNPPVERGVPAEKEQLRRNLSLLKKKMHG-QAGS----RRSQSAGPRAGELFGDPNAAPSGPGGVDSHLEG--GGRQHLH---MTTGTAPAMM-------------PADPGAFLRDRDAAERALGRRGVGGGARXXXXPDGPGSPYAIDPNA 670
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9651.19109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR2_ECTSI8.810e-1442.71Zinc finger, C2H2 type family protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9651contigF-distichus_contig9651:6656..11034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D8LNR2
Preferred nameZC2HC1A
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc-finger of a C2HC-type
EggNOG OGsKOG3940@1,KOG3940@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1510
Cds size1509
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9651.19109.1prot_F-distichus_contig9651.19109.1Fucus distichus monoicouspolypeptideF-distichus_contig9651 6656..11033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.2432559-CDS-F-distichus_contig9651:6655..70301622931143.2432559-CDS-F-distichus_contig9651:6655..7030Fucus distichus monoicousCDSF-distichus_contig9651 6656..7030 +
1690886176.674419-CDS-F-distichus_contig9651:6655..70301690886176.674419-CDS-F-distichus_contig9651:6655..7030Fucus distichus monoicousCDSF-distichus_contig9651 6656..7030 +
1622931143.257932-CDS-F-distichus_contig9651:8038..84641622931143.257932-CDS-F-distichus_contig9651:8038..8464Fucus distichus monoicousCDSF-distichus_contig9651 8039..8464 +
1690886176.6866362-CDS-F-distichus_contig9651:8038..84641690886176.6866362-CDS-F-distichus_contig9651:8038..8464Fucus distichus monoicousCDSF-distichus_contig9651 8039..8464 +
1622931143.27393-CDS-F-distichus_contig9651:9471..96721622931143.27393-CDS-F-distichus_contig9651:9471..9672Fucus distichus monoicousCDSF-distichus_contig9651 9472..9672 +
1690886176.7022715-CDS-F-distichus_contig9651:9471..96721690886176.7022715-CDS-F-distichus_contig9651:9471..9672Fucus distichus monoicousCDSF-distichus_contig9651 9472..9672 +
1622931143.2905197-CDS-F-distichus_contig9651:10227..104961622931143.2905197-CDS-F-distichus_contig9651:10227..10496Fucus distichus monoicousCDSF-distichus_contig9651 10228..10496 +
1690886176.7157338-CDS-F-distichus_contig9651:10227..104961690886176.7157338-CDS-F-distichus_contig9651:10227..10496Fucus distichus monoicousCDSF-distichus_contig9651 10228..10496 +
1622931143.311244-CDS-F-distichus_contig9651:10795..110331622931143.311244-CDS-F-distichus_contig9651:10795..11033Fucus distichus monoicousCDSF-distichus_contig9651 10796..11033 +
1690886176.7297213-CDS-F-distichus_contig9651:10795..110331690886176.7297213-CDS-F-distichus_contig9651:10795..11033Fucus distichus monoicousCDSF-distichus_contig9651 10796..11033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9651.19109.1

>prot_F-distichus_contig9651.19109.1 ID=prot_F-distichus_contig9651.19109.1|Name=mRNA_F-distichus_contig9651.19109.1|organism=Fucus distichus monoicous|type=polypeptide|length=503bp
FREDPRDWSERDLLGTVASRRRDSYGTGEGIVYPAAMSLPDGNGRSVGHV
VCGSNGKEAGTSDNEAFAWSISGEGGRCRRSQNGDSKRGARRQAKRPEWN
SETAEAGPLSGPPGNLTDNSSAAVQRRTSASRNGSSKNHTTDCSSNNNFG
EDSGNRRSSNGGYTRYTGSRNVDDDYHGYLYSNSAGETVLEDRHARAYSN
SNSTAELAADLAAQEEDLECRKGGGSGERMTGLGSSRVPPTLSAGGHGHG
HGHGAAGRGKREGYRSQMTPNPSRGSFKLHRGAVTGIGGVKWKSGPTGEE
VAVDKHQLRRNLTLLKKKMHSAQTGTFADRRRSQSAGSRSGELSGDPDGA
DVIKAVDRRYPGYGGGHQHLHPPHTTSGTAPAVMSTMSKSTMPMSTTPIS
VMLEASCRDGFSMAREPRVDGQSRPPAEGPGSPYTVDSSSCTNVHRDLHR
DAMERGLADHASRNGKILLVKRGSSHAAKASTTHGGQSESGSIELKGRGG
FMS
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mRNA from alignment at F-distichus_contig9651:6656..11034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9651.19109.1 ID=mRNA_F-distichus_contig9651.19109.1|Name=mRNA_F-distichus_contig9651.19109.1|organism=Fucus distichus monoicous|type=mRNA|length=4379bp|location=Sequence derived from alignment at F-distichus_contig9651:6656..11034+ (Fucus distichus monoicous)
TTTCGAGAGGACCCCCGCGACTGGTCTGAGCGGGATCTCCTGGGAACCGT
GGCGTCGCGACGGCGTGATTCTTATGGCACAGGAGAGGGAATCGTGTATC
CTGCGGCGATGTCGCTGCCGGACGGAAATGGCCGCAGTGTAGGGCATGTG
GTGTGCGGGTCTAACGGGAAAGAAGCTGGCACCTCTGACAATGAGGCCTT
TGCGTGGTCGATCAGCGGTGAGGGCGGACGGTGTAGGAGAAGCCAAAATG
GGGATTCTAAGAGAGGTGCGAGGCGGCAAGCGAAGAGGCCAGAATGGAAC
AGTGAAACTGCCGAGGCTGGTCCCCTTTCGGGTCCTCCCGGAAACTTGAC
GGACAACTCCTCCGCCGCCGTGCAGGTTAGCTGGAATCAGTCGTGTAAGG
GTCGAACCTTCAGCCTGGGGTGTTTACGAGAGCTCCCGCAGGCGTAGATC
TACTATCGTGCTGGGGCCGAGGGCTGAGGCTTAGGGCAGCACCACCGCAA
AAGAACATGGAACATGGAACATGACCTTCGAAAGTGATATTAATAGTCGT
TAATACGAGTACTAGTTAATACTAAAACCAGTCGGTATTAGTACTCGCGG
AAGTGTTAATACTGGTAGCTAATAGTGGTACATAGTCAATAGTGGTACAT
AGTCATTCAGACCTGTTAGTATCATAGCTCGTGCTTAAAGGCACGTATCA
GGTGCGTAGTTAATACCATATGAATGAGTTAATATAAAGTAGTTAATATT
GTAATTGGTAGTTAATACTGTAGTTAGTTAATAGACGCTGCGCGTGATGT
TGACACGTTTTCATATCGTAGTTACACTCTCTGACTGTGTTGAATTGCTG
TTTCGACGACGAAATTCTAGGTTTACTATTGAATACATTTTCTGTAACTG
CTATATAGTCGTTTCGACTATACTCTACTAGATACAAATATAACATAACA
CGAAGTTGTTGGTAACCTGGTAACAGCCTTGGCAGTTTCAACACATTTGT
TCACTACAGCCGTATGGCGTATCACTATTCAAGAGATGCATTTCAAGTGA
TACAAAACGTCAGACTATATGTTTTGGCACAAAGGAACAATCAGCTCCCC
GCCTCCTAAACCCTGTCCTTCCTAAGAACGTAGATATGGAAGACGTGCTA
TGAAAAGTAGACAATAACCACACCGTACACCGCAAAGGAAAGGAAATAAA
TGAGCAAGAGGAAGCACGTATCGTACGTTATGCAAGGTGCGAGAAAAATG
CACTTGTAATAGTTTAATCTGTCCTTTGAAGCTTTACATTTCATACCTAT
AGACTATAAGGTAAGTTGTGTTTTTTGTTAAATACATTCGTATCGTCTGT
CTGTCTGTCTGTCTGTCTGTCTTTCTGTTCCAGAGACGGACATCGGCGTC
GCGAAACGGGAGCTCGAAGAACCATACGACCGACTGTAGCAGCAACAACA
ACTTCGGTGAAGATTCCGGCAACAGAAGAAGCAGCAACGGCGGCTATACT
CGCTATACTGGTTCAAGGAATGTTGATGATGACTACCATGGTTACCTCTA
CAGCAATTCGGCCGGTGAAACTGTACTGGAGGACAGGCACGCGAGGGCAT
ACAGCAATAGCAATTCGACCGCTGAACTCGCCGCGGACCTCGCCGCTCAA
GAGGAAGATCTGGAATGTCGGAAGGGAGGAGGCAGCGGAGAGAGGATGAC
CGGCCTCGGAAGCTCCAGGGTACCGCCAACACTGAGTGCAGGGGGTCACG
GTCATGGTCACGGCCACGGAGCGGCGGGAAGGGGGAAGAGGGAAGGTTAT
CGGTCTCAGGTAAAACGATAACAACAGTCGTTTATTCGGTAAAGTAGAGT
ACATTACTATTAATAGAATGGTTTGTCGTTTCACTGCTTGTTGTATGTAT
GTATGTATTTATTTATGTATTTATTTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAAGTAAGGTC
ACACATGTAGCAAGAGTATGGATCAACTGGCCAAGGTTGCCAATCCTGCT
CGTGGTCAGCTGAACAGGGAAAATGAATATTTGCCTGTCCGCGTTCGTGC
CTGAAAACTTCGCCTCGCGAGACGATTTCGGCAGTCCCGTCCCGCGTCAG
CCTGCTCATCTCCATGCTCAGGCTGAATCTGGTGCTTACTTACGGGATTC
CCCCCGAGTTCCGCGGCGGCGCCCATATATTTAGAGGAGATGAAGTGAAA
GAAATAAAAAGCAACGGCCTATTAAATAGCTTCGCGGTATCAAGTATAAG
TTGTTACTTTGTTTTTGTGCCTGTGTGAAAGTATCGGTTGTTCGAAAAGG
TGCTTTCTCCACCAATCAATGTTCACCCAAGACTGCGGTCTGCACTTCAG
GCTCTATAGCGTTTTTTCCGATCCCCGCTTTTGTGCCCATGTGGGCAAAA
TCTTGCCTAGGATTTAGATAGGTAACTTGATTAAATATTTTCATCGTCGT
TTTTACGGTCGTGAACGGTACAGCTACTACAGTGTTAATACATGAATGAG
TTTGTCACGTCATAAGGTAAATATACTATACCCCTTCTGTGAAGTGTTGC
TGATTATTTTTACCTGCCCGTTGTATTTGTAACGGCTTGCCGCGTCGTAT
TACTTCCGTTGAATGACAAAAAAGGCTTAGCTTTATGCATTCATGCATTT
TGAATTATCTGCCAAGCAGCGGCGCGCTACACACGGGATTCTGACAAGTA
GAGAAAAACTAACGCTGTCGCTTGTGTCGCAACCCTCATCGTTCATCCCT
CATCCTTTTCCTTCAGATGACACCGAATCCCTCTAGAGGGAGCTTTAAGT
TGCATCGAGGCGCTGTCACGGGTATTGGAGGCGTTAAGTGGAAAAGCGGG
CCGACGGGGGAAGAGGTCGCTGTTGACAAACATCAACTGCGACGCAATTT
AACATTGTTGAAGAAGAAAATGCACAGCGCTCAGACGGGAACGTTCGCGG
ACAGGCGAAGGAGTCAGGTGAAGTGGGACGGGGTAAGAATTTGTTGCGGA
ATTCATTTTTGCGCGTCGAATAAGGCGAACGCTTTGGTTTGAATATACTG
TTTGAATAGATGCTTGGATGGATTGAAGCGCGCACGGCCCTTTTGTGCGG
ATGCCATCGGTGCGGTGCTAGGTGGTTACTACCCATGTGATTGTACAGAG
ACAGAGGTGATTAACTTGGAGGCACCGAAAATCCCATATTCATGAATTAT
AGGTATACTGATAACGTACTCATTTGGCTGAGTGTACCCTTAGGGAGACC
TCCGCTTTCGAAAACTTGTTCGCTTTCCGAAACACTAAGTCGGATACTAT
GCATGCTACCTTCCACGAAACACTAACCGTTACCGATATCTTCGGCCTCC
AGCAAGGCCTGCATCCTTCCTGGCAGATTTTTCGTGCAGTAAGCATGTAG
CCTAACCCGTAAATAATGGAGCCTTCCGTAATAATGATGTTAAAAATGTC
TAGACACGCAAACTCCGTTGGAAACATTTACGCACTCTTTCGGGAAAATG
TACCCTTTTTACCCTTTTTCAGAGCGCCGGGTCGCGGTCGGGAGAACTTT
CTGGCGACCCAGACGGGGCAGATGTCATCAAGGCTGTCGATCGCCGTTAT
CCAGGTTATGGTGGTGGCCACCAACACCTACACCCACCACACACCACCTC
AGGAACGGCACCCGCGGTGATGTCTACCATGTCGAAATCTACGATGCCCA
TGTCGACGACGCCGATATCCGTGATGCTTGAGGCATCCTGCAGAGACGGT
TTCTCCATGGCAAGGGAGCCGAGAGTCGATGGGCAGTCTAGGTAAAAACT
TGTAGGGTTGGCTGATTGTGGAGCGCCTTCGCCTTTTGGGGCCTTCAAAA
TCCGCCGGCGGTTGTCGCAGGATTCTGGCCGCGAATAAAGATGGAGGGCA
TTGTGGGAAGTGCAGAAAAGTAGAGGGATCCAAGTACAGTTTAACACTGA
ACCTTGGGGTATTTGTATTAATTTCAGGCGTAGATCGTGGTGACGGATTT
TCTAATGAGAGTAACTACAAACACTCTTTTAAGGCTTGTGCGGCTTCCCC
CACTCATCGCCCGATTGCCTCCACCTCCCCGTTCTCTCAGACCACCAGCC
GAGGGCCCCGGGAGCCCCTATACAGTCGATAGCAGCTCTTGCACCAACGT
TCACCGTGACCTTCATCGCGACGCTATGGAGCGCGGACTCGCTGACCATG
CCTCGCGAAATGGGAAGATTCTTCTAGTAAAGAGGGGTTCTTCCCACGCG
GCGAAGGCGAGCACCACGCACGGTGGACAAAGCGAAAGCGGTAGCATAGA
GTTAAAGGGCAGAGGGGGGTTTATGTCGG
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Coding sequence (CDS) from alignment at F-distichus_contig9651:6656..11034+

>mRNA_F-distichus_contig9651.19109.1 ID=mRNA_F-distichus_contig9651.19109.1|Name=mRNA_F-distichus_contig9651.19109.1|organism=Fucus distichus monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at F-distichus_contig9651:6656..11034+ (Fucus distichus monoicous)
TTTCGAGAGGACCCCCGCGACTGGTCTGAGCGGGATCTCCTGGGAACCGT
GGCGTCGCGACGGCGTGATTCTTATGGCACAGGAGAGGGAATCGTGTATC
CTGCGGCGATGTCGCTGCCGGACGGAAATGGCCGCAGTGTAGGGCATGTG
GTGTGCGGGTCTAACGGGAAAGAAGCTGGCACCTCTGACAATGAGGCCTT
TGCGTGGTCGATCAGCGGTGAGGGCGGACGGTGTAGGAGAAGCCAAAATG
GGGATTCTAAGAGAGGTGCGAGGCGGCAAGCGAAGAGGCCAGAATGGAAC
AGTGAAACTGCCGAGGCTGGTCCCCTTTCGGGTCCTCCCGGAAACTTGAC
GGACAACTCCTCCGCCGCCGTGCAGTTTCGAGAGGACCCCCGCGACTGGT
CTGAGCGGGATCTCCTGGGAACCGTGGCGTCGCGACGGCGTGATTCTTAT
GGCACAGGAGAGGGAATCGTGTATCCTGCGGCGATGTCGCTGCCGGACGG
AAATGGCCGCAGTGTAGGGCATGTGGTGTGCGGGTCTAACGGGAAAGAAG
CTGGCACCTCTGACAATGAGGCCTTTGCGTGGTCGATCAGCGGTGAGGGC
GGACGGTGTAGGAGAAGCCAAAATGGGGATTCTAAGAGAGGTGCGAGGCG
GCAAGCGAAGAGGCCAGAATGGAACAGTGAAACTGCCGAGGCTGGTCCCC
TTTCGGGTCCTCCCGGAAACTTGACGGACAACTCCTCCGCCGCCGTGCAG
AGACGGACATCGGCGTCGCGAAACGGGAGCTCGAAGAACCATACGACCGA
CTGTAGCAGCAACAACAACTTCGGTGAAGATTCCGGCAACAGAAGAAGCA
GCAACGGCGGCTATACTCGCTATACTGGTTCAAGGAATGTTGATGATGAC
TACCATGGTTACCTCTACAGCAATTCGGCCGGTGAAACTGTACTGGAGGA
CAGGCACGCGAGGGCATACAGCAATAGCAATTCGACCGCTGAACTCGCCG
CGGACCTCGCCGCTCAAGAGGAAGATCTGGAATGTCGGAAGGGAGGAGGC
AGCGGAGAGAGGATGACCGGCCTCGGAAGCTCCAGGGTACCGCCAACACT
GAGTGCAGGGGGTCACGGTCATGGTCACGGCCACGGAGCGGCGGGAAGGG
GGAAGAGGGAAGGTTATCGGTCTCAGAGACGGACATCGGCGTCGCGAAAC
GGGAGCTCGAAGAACCATACGACCGACTGTAGCAGCAACAACAACTTCGG
TGAAGATTCCGGCAACAGAAGAAGCAGCAACGGCGGCTATACTCGCTATA
CTGGTTCAAGGAATGTTGATGATGACTACCATGGTTACCTCTACAGCAAT
TCGGCCGGTGAAACTGTACTGGAGGACAGGCACGCGAGGGCATACAGCAA
TAGCAATTCGACCGCTGAACTCGCCGCGGACCTCGCCGCTCAAGAGGAAG
ATCTGGAATGTCGGAAGGGAGGAGGCAGCGGAGAGAGGATGACCGGCCTC
GGAAGCTCCAGGGTACCGCCAACACTGAGTGCAGGGGGTCACGGTCATGG
TCACGGCCACGGAGCGGCGGGAAGGGGGAAGAGGGAAGGTTATCGGTCTC
AGATGACACCGAATCCCTCTAGAGGGAGCTTTAAGTTGCATCGAGGCGCT
GTCACGGGTATTGGAGGCGTTAAGTGGAAAAGCGGGCCGACGGGGGAAGA
GGTCGCTGTTGACAAACATCAACTGCGACGCAATTTAACATTGTTGAAGA
AGAAAATGCACAGCGCTCAGACGGGAACGTTCGCGGACAGGCGAAGGAGT
CAGATGACACCGAATCCCTCTAGAGGGAGCTTTAAGTTGCATCGAGGCGC
TGTCACGGGTATTGGAGGCGTTAAGTGGAAAAGCGGGCCGACGGGGGAAG
AGGTCGCTGTTGACAAACATCAACTGCGACGCAATTTAACATTGTTGAAG
AAGAAAATGCACAGCGCTCAGACGGGAACGTTCGCGGACAGGCGAAGGAG
TCAGAGCGCCGGGTCGCGGTCGGGAGAACTTTCTGGCGACCCAGACGGGG
CAGATGTCATCAAGGCTGTCGATCGCCGTTATCCAGGTTATGGTGGTGGC
CACCAACACCTACACCCACCACACACCACCTCAGGAACGGCACCCGCGGT
GATGTCTACCATGTCGAAATCTACGATGCCCATGTCGACGACGCCGATAT
CCGTGATGCTTGAGGCATCCTGCAGAGACGGTTTCTCCATGGCAAGGGAG
CCGAGAGTCGATGGGCAGTCTAGAGCGCCGGGTCGCGGTCGGGAGAACTT
TCTGGCGACCCAGACGGGGCAGATGTCATCAAGGCTGTCGATCGCCGTTA
TCCAGGTTATGGTGGTGGCCACCAACACCTACACCCACCACACACCACCT
CAGGAACGGCACCCGCGGTGATGTCTACCATGTCGAAATCTACGATGCCC
ATGTCGACGACGCCGATATCCGTGATGCTTGAGGCATCCTGCAGAGACGG
TTTCTCCATGGCAAGGGAGCCGAGAGTCGATGGGCAGTCTAGACCACCAG
CCGAGGGCCCCGGGAGCCCCTATACAGTCGATAGCAGCTCTTGCACCAAC
GTTCACCGTGACCTTCATCGCGACGCTATGGAGCGCGGACTCGCTGACCA
TGCCTCGCGAAATGGGAAGATTCTTCTAGTAAAGAGGGGTTCTTCCCACG
CGGCGAAGGCGAGCACCACGCACGGTGGACAAAGCGAAAGCGGTAGCATA
GAGTTAAAGGGCAGAGGGGGGTTTATGTCGACCACCAGCCGAGGGCCCCG
GGAGCCCCTATACAGTCGATAGCAGCTCTTGCACCAACGTTCACCGTGAC
CTTCATCGCGACGCTATGGAGCGCGGACTCGCTGACCATGCCTCGCGAAA
TGGGAAGATTCTTCTAGTAAAGAGGGGTTCTTCCCACGCGGCGAAGGCGA
GCACCACGCACGGTGGACAAAGCGAAAGCGGTAGCATAGAGTTAAAGGGC
AGAGGGGGGTTTATGTCG
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