mRNA_F-distichus_contig96507.19108.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96507.19108.1
Unique NamemRNA_F-distichus_contig96507.19108.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: D8LMN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN4_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.430e-47
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVREHK 288
            RAYDVGDPV+FV+DTG EDWYIVTRIN+LTTVFRRWDGQATL+ NN+MA K +RNQWRS   LH+TMIAVSVDTPMEKLD++K GIA G+R   H+
Sbjct:   11 RAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKSGIAAGLRRGRHR 106
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.640e-43
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVREH 285
            +AYDVGDPV+FV+DTG EDWYIVTRIN+LTTVFRRWDGQATL+ NN+MA K +RNQWRS   LH+TMIAVSVDTPMEKLD++K GIA G+R   H
Sbjct:  837 KAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLRRGRH 931
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.800e-16
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKE 252
            RAYDVGD V+  ++   E  Y+V RIN+LTTVFRRWD   T++PN  +A + +RN  RSG  +    + VS+ TP  KL+ +KE
Sbjct:  966 RAYDVGDRVYIKDELNDEANYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKE 1049
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A835YTT2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-13
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRV--REH 285
            R +DVGD V F +D G ++ ++V RINLL+TV +RWDGQ  + PN  +A + +RN  RSGP  +   + V  D   E L   ++ +    R   R+H
Sbjct:  492 RPFDVGDGVHFRDDMGQDNVFVVHRINLLSTVLKRWDGQYVVWPNRFLALREIRNMRRSGPQSNTLTVFVRRDASAEALARYRDALRAAARAAPRDH 588
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A7J9CBP6_GOSGO (Mechanosensitive ion channel protein n=23 Tax=Gossypium TaxID=3633 RepID=A0A7J9CBP6_GOSGO)

HSP 1 Score: 66.6 bits (161), Expect = 9.640e-11
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVREH 285
              +DVGD     E  G++   +V  +N+LTTVF R+DGQ  + PN+V++TK + N +RS  ++      + V TP EK+  +KE I   +  REH
Sbjct:  604 HPFDVGDRC---EVDGVQ--MVVEEMNILTTVFLRYDGQKLVYPNSVLSTKPIGNFYRSPDMVETIQFCIHVSTPPEKIATMKERIIGYIESREH 693
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A2P6PZF5_ROSCH (Mechanosensitive ion channel protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6PZF5_ROSCH)

HSP 1 Score: 64.3 bits (155), Expect = 6.230e-10
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVR 279
              YDVGD     E  G++   +V  +NLLTTVF ++D Q  + PN+V+ATK + N +RS  +       V + TP+EKL+ VKE I   +  R
Sbjct:  563 HPYDVGDRC---EVDGVQ--LVVEEMNLLTTVFLKFDNQKVIYPNSVLATKPIANYYRSPDMGDAVDFCVHISTPLEKLNIVKERIIGYIETR 650
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A7J7C257_TRIWF (Mechanosensitive ion channel protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C257_TRIWF)

HSP 1 Score: 64.3 bits (155), Expect = 6.290e-10
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIAN 264
              +DVGD     +  G+E   +V  +N+LTTVF R+D Q  + PNNV+ATK + N +RS  +       + + TP +K+DE+K+ I +
Sbjct:  686 HPFDVGDRC---QIEGVE--MVVEEMNILTTVFLRYDNQKIVYPNNVLATKAISNYYRSPHMGDGVEFCIHITTPADKIDEMKQRITS 768
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A6P4PGZ8_GOSAR (Mechanosensitive ion channel protein n=21 Tax=Gossypium TaxID=3633 RepID=A0A6P4PGZ8_GOSAR)

HSP 1 Score: 64.3 bits (155), Expect = 6.300e-10
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVREHK 288
              +DVGD     E  GI+   IV  +N+LTTVF R+D Q  ++PN+V+ATK + N +RS  +L      + V TP EK+  +K+ I   M   EHK
Sbjct:  719 HPFDVGDRC---EIDGIQ--MIVEEMNILTTVFLRYDNQKIIIPNSVLATKAIHNYYRSPDMLEIVEFCIHVKTPAEKIGLMKQRI---MSYIEHK 806
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A4S4D1J7_CAMSI (Mechanosensitive ion channel protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4D1J7_CAMSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.520e-10
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGI 258
              +DVGD     E  G++   +V  +N+LTTVF R+D Q  + PN+V+ATK + N +RS  +L +   ++ + TPMEK+  +++ I
Sbjct:  517 HPFDVGDRC---EVDGVQ--MVVEEMNILTTVFLRYDNQMIIYPNSVLATKPISNYFRSPDMLDSVEFSIHISTPMEKIASMRKSI 597
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BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Match: A0A6P6AWV1_DURZI (Mechanosensitive ion channel protein n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AWV1_DURZI)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-9
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    1 RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMATKTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVREH 285
              +DVGD     E  G++   +V  +N+LTTVF R+DGQ  + PN+V++TK + N +RS  ++      + V TP EK+  +KE I   +  +EH
Sbjct:  634 HPFDVGDRC---EVDGVQ--MVVEEMNILTTVFLRFDGQKIVYPNSVLSTKPIGNFYRSPDMVETIEFCIHVSTPSEKIVIMKERITEYIESQEH 723
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96507.19108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN4_ECTSI1.430e-4776.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR3_9PHAE9.640e-4375.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU8_9STRA2.800e-1647.62Mechanosensitive ion channel-domain-containing pro... [more]
A0A835YTT2_9STRA1.380e-1339.18EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7J9CBP6_GOSGO9.640e-1137.89Mechanosensitive ion channel protein n=23 Tax=Goss... [more]
A0A2P6PZF5_ROSCH6.230e-1039.78Mechanosensitive ion channel protein n=2 Tax=Rosoi... [more]
A0A7J7C257_TRIWF6.290e-1037.50Mechanosensitive ion channel protein n=1 Tax=Tript... [more]
A0A6P4PGZ8_GOSAR6.300e-1040.63Mechanosensitive ion channel protein n=21 Tax=Goss... [more]
A0A4S4D1J7_CAMSI8.520e-1037.21Mechanosensitive ion channel protein n=2 Tax=Camel... [more]
A0A6P6AWV1_DURZI1.170e-936.84Mechanosensitive ion channel protein n=1 Tax=Durio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96507contigF-distichus_contig96507:42..1781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog2880.D8LMN4
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.1644495-CDS-F-distichus_contig96507:41..1341622931143.1644495-CDS-F-distichus_contig96507:41..134Fucus distichus monoicousCDSF-distichus_contig96507 42..134 +
1690886176.6411338-CDS-F-distichus_contig96507:41..1341690886176.6411338-CDS-F-distichus_contig96507:41..134Fucus distichus monoicousCDSF-distichus_contig96507 42..134 +
1622931143.1926887-CDS-F-distichus_contig96507:1586..17811622931143.1926887-CDS-F-distichus_contig96507:1586..1781Fucus distichus monoicousCDSF-distichus_contig96507 1587..1781 +
1690886176.657109-CDS-F-distichus_contig96507:1586..17811690886176.657109-CDS-F-distichus_contig96507:1586..1781Fucus distichus monoicousCDSF-distichus_contig96507 1587..1781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96507.19108.1prot_F-distichus_contig96507.19108.1Fucus distichus monoicouspolypeptideF-distichus_contig96507 42..1781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96507.19108.1

>prot_F-distichus_contig96507.19108.1 ID=prot_F-distichus_contig96507.19108.1|Name=mRNA_F-distichus_contig96507.19108.1|organism=Fucus distichus monoicous|type=polypeptide|length=96bp
RAYDVGDPVFFVEDTGIEDWYIVTRINLLTTVFRRWDGQATLVPNNVMAT
KTVRNQWRSGPLLHNTMIAVSVDTPMEKLDEVKEGIANGMRVREHK
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mRNA from alignment at F-distichus_contig96507:42..1781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96507.19108.1 ID=mRNA_F-distichus_contig96507.19108.1|Name=mRNA_F-distichus_contig96507.19108.1|organism=Fucus distichus monoicous|type=mRNA|length=1740bp|location=Sequence derived from alignment at F-distichus_contig96507:42..1781+ (Fucus distichus monoicous)
AGGGCCTACGACGTTGGAGACCCGGTGTTTTTCGTGGAAGACACCGGAAT
CGAGGATTGGTACATTGTGACGAGAATCAACTTGCTCACCACGGTACGGA
AGCGTTTTTTTTTTTGGGGGGGGGGGTATTTATTAAATTGCACATAACCG
TGCAATTCGCCCAGTAATCTACTTATTCTATGCTACTGCCTGTAACCCAC
CTGGGTATTCATTATCGTAGACATTTTGTTGGCTAGAAATGCGCGTGCAT
ACAGCTACAACTCTTCTCCCTACTATGACGGCTCTCGGCCGGAACCCCAC
TCCCTCGACATCAACTACAACGCTCTGCCCGGAGAAAAATATGGAGACGA
AAACGCGGGAAATGGTGAACAGGCGTATCCCCCTCCAGCACCATGGGTAA
AGCTAGTTGCTCGCCGCTTGGCGCAGCAAATAGAGGCGGGAATCCGACCA
ACAGGGAGCACCACGACCAACTCTCCTTGTAGCCTCCCCTTCCAAACCCA
GCAATCTTGCCCCCCCTCATCAAACCGTGCAACGTACTGCAGTAGTGGTG
TCGTCATTCCGCCCCCTTCCCCTTTCAATACTCAATCGATCCGTGTCCCG
ACTACACACGCACACCTTTCCTTTCTACGCAAGAAAATCCCCGCCAGCCA
TAGGGCCCGGGGTGAAATAACCAACCGTAAGTCTTGCACTGGGCGCTAAT
CGCGAGGGCAAGGGGAGAGTCAAGGGTAAAGCTAGTTGGGTACAAAGTAG
CCGAATAGGGTCTGCGCTCGTGTGTGTACGCCGGAACGTACAACATCGTG
AGCTAAACCTCCCCCGGTCCACGCGATTTGCGCCCATTACTGCCGTCATG
GTTGCTGTACCCATCGGTGGGCCTACCGGTTGCCTCGTAAGTCACACGAA
AAATAAACCACAACCCATAGGGCACAGGGTGTACCACCAATCGTAAGCCT
TGCACTGGGCACTAATCGTGAGGGCAAGGAGAGGGTCAAGGATAAAGCTA
GTCGGATACAAAGTAGCCGAATGGGATCTGTGCTCGTGTGTGTACACCGG
AACGCACAGCAACGCGAGCTAAAACTTCCCGAGTCCACGCGATTTGTGCT
CAATACTGTTCTAATGGTTGCTGTGTCCACCTGTAAGCCCACCGGCGCAA
GTCCTCCTTCCCTCTCGCCCCAAAACATACAATCACACGAAAAATCCCTC
ACAAGCCCTAGGGCCCGAGTTGAAGCACCAACCATGAGTCTTACGCTGTG
TGTGTTGTGTTTGTGTGTGTGTGTGTGTGTGTGTATTTAATTTCAGTATC
GTACGATCGACATCAGTTTTTTGTTTGTTTGAATAATATATATATGGTAC
ATATTATCTCAATAACATGCCCCACGTACACGTTGTTTTGTCACCTAATG
ACAATAATTTGTCACTATTAATAGTTGCAACATATTTCAATCTCACTCGG
TTTGTCACCTATTAATACGCCATAAAATTGTGACACATGACGTAATCGCA
TCAATGTCTCGCTATCTCTGTGCTTTCTCTTACAACATCCGTCAGGTCTT
CAGGAGGTGGGATGGGCAGGCTACCCTCGTGCCCAACAACGTAATGGCCA
CCAAGACTGTCCGTAATCAGTGGAGGTCCGGCCCGCTGCTGCACAATACC
ATGATCGCGGTGTCTGTGGACACGCCCATGGAAAAGCTCGACGAAGTCAA
GGAAGGGATCGCCAACGGGATGCGGGTGAGAGAACACAAG
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Coding sequence (CDS) from alignment at F-distichus_contig96507:42..1781+

>mRNA_F-distichus_contig96507.19108.1 ID=mRNA_F-distichus_contig96507.19108.1|Name=mRNA_F-distichus_contig96507.19108.1|organism=Fucus distichus monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at F-distichus_contig96507:42..1781+ (Fucus distichus monoicous)
AGGGCCTACGACGTTGGAGACCCGGTGTTTTTCGTGGAAGACACCGGAAT
CGAGGATTGGTACATTGTGACGAGAATCAACTTGCTCACCACGAGGGCCT
ACGACGTTGGAGACCCGGTGTTTTTCGTGGAAGACACCGGAATCGAGGAT
TGGTACATTGTGACGAGAATCAACTTGCTCACCACGGTCTTCAGGAGGTG
GGATGGGCAGGCTACCCTCGTGCCCAACAACGTAATGGCCACCAAGACTG
TCCGTAATCAGTGGAGGTCCGGCCCGCTGCTGCACAATACCATGATCGCG
GTGTCTGTGGACACGCCCATGGAAAAGCTCGACGAAGTCAAGGAAGGGAT
CGCCAACGGGATGCGGGTGAGAGAACACAAGGTCTTCAGGAGGTGGGATG
GGCAGGCTACCCTCGTGCCCAACAACGTAATGGCCACCAAGACTGTCCGT
AATCAGTGGAGGTCCGGCCCGCTGCTGCACAATACCATGATCGCGGTGTC
TGTGGACACGCCCATGGAAAAGCTCGACGAAGTCAAGGAAGGGATCGCCA
ACGGGATGCGGGTGAGAGAACACAAG
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