mRNA_F-distichus_contig9640.19097.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9640.19097.1
Unique NamemRNA_F-distichus_contig9640.19097.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A6H5KT61_9PHAE (Hira domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT61_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 8.990e-63
Identity = 153/270 (56.67%), Postives = 173/270 (64.07%), Query Frame = 3 
Query:    6 RAGVTAEGMPLVMLASPGAFGGSLQAFALHQGMGTWIRVADGRFALSDFYSSGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEYYDTLEMSC----ELLPPPARP 803
            RAGVT EGMPLVMLA  GA GGSLQAF  H G+ TW+RVADGR ALSDFYSSGPCTS ++RGGVLSALQ GVR  +SP+P  +LQAS+AG RPA         AA+A  G   RESL                       EF DVLRAYAGHLAKSAG+G+GR+R LCDKL+LA+    +   +    G             T  GE+ GLRL NGPS+LGL K+ LL  VVLPALSGNRSLQRLVSEYYD LE       + LPPPA P
Sbjct:  863 RAGVTPEGMPLVMLACHGAPGGSLQAFTFHLGLETWVRVADGRSALSDFYSSGPCTSPSTRGGVLSALQRGVRSGASPSPGAILQASKAGKRPA---------AAMA--GAPARESLXXXXXXXXXXXXXXXXXXXXXXXEFEDVLRAYAGHLAKSAGYGEGRVRTLCDKLMLASIGVGKGANIGGDGGSGXXXXXXXXXXXT--GELPGLRLCNGPSILGLDKLHLLSKVVLPALSGNRSLQRLVSEYYDNLEYVSKSRRQQLPPPAPP 1119
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A836CIQ6_9STRA (Protein HIRA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIQ6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.100e-17
Identity = 89/231 (38.53%), Postives = 111/231 (48.05%), Query Frame = 3 
Query:  108 TWIRVADGRFALSDFYSS---------GPCTSGASR------GGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRG-EILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEY 752
            TW+RVADGR ALS F++S          P TS A        G V+  LQ  VR  +  T + +   + A   P        T    AA GG     LQ +VTR HLEESL   +   S  EF  VL  YA HLA      + RIR+LCD+L   A   SQ+                 +  + R G  +LGLRLG G  VLG  +  LL+ +VLPALS N ++QRLV EY
Sbjct:  741 TWLRVADGRHALSSFHTSLATSTSSLAAPSTSSADAALDLQPGAVVERLQASVRRGARVTASGISSVATADIMPL-----LTTLPGEAAAGGA----LQHSVTRAHLEESLNCALALSSRLEFERVLGLYARHLAAPGRVDELRIRSLCDRLSAPAADASQT-----------------STSTERAGVPLLGLRLGPGFEVLGAPRQQLLERIVLPALSSNSAVQRLVQEY 945
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A7S2UMJ9_9STRA (Protein HIRA n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMJ9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.500e-12
Identity = 80/231 (34.63%), Postives = 108/231 (46.75%), Query Frame = 3 
Query:   66 GGSLQAFALHQGMGTWIRVADGRFALSDFYSSGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAV-TRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGR--IRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSE 749
            GGSLQAF   + M  WIRV+D RF+LSDFYSS P    A    VLS +    RV          +AS   +R  G   ++L E       G  RES  SAV TR H E+ +   +   S  EF   L  Y   L         R  +  L  +LL ++NT  +S   ++          C               L +  SV GL+K+DL++D+V+P +S NR+LQRLV+E
Sbjct:  570 GGSLQAFVYDRQMELWIRVSDSRFSLSDFYSSRPSLK-AGTTAVLSQIDDSTRV----------EASAFSSRRGGDITSSLYE------NGEERESSTSAVITRSHCEDRMACALALSSVLEFKHWLSLYVRQLTVEGNIAHLRFVVDMLIGRLLASSNTSEESDKPQAQY--------C-------------WWLSSADSVFGLAKMDLVRDIVVPEMSKNRALQRLVNE 762
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A7S2WVS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVS7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.990e-12
Identity = 76/234 (32.48%), Postives = 99/234 (42.31%), Query Frame = 3 
Query:   51 SPGAFGGSLQAFALHQGMGTWIRVADGRFALSDFYSSGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEY 752
            SP     S++AF LHQG+GTW+RV DGRF  SDF+S  P  S   + G    LQ     +SSP PA  L    +   P+G                      Q+ +T  HLEE L  T    SS EF +  + Y   L    G  + R+R +CD LL ++   S   G                   T  G + GL   +G         +LL+ VV PA +G  S QRL  EY
Sbjct:  489 SPARTHSSVEAFVLHQGLGTWLRVGDGRFFASDFFSMLPPVS---KSGPAERLQAECAASSSPPPASALLRLDSHGEPSG---------------------FQAGLTLAHLEERLAATAALRSSHEFREWFQRYVRALVAMGG--ESRLRLVCDVLLSSSLQGSFPPG-------------------TLLGTLSGLATDSGH--------ELLEKVVFPACAGTSSFQRLALEY 669
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A1Y2GTF8_9FUNG (Protein HIR n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GTF8_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 7.250e-8
Identity = 72/252 (28.57%), Postives = 101/252 (40.08%), Query Frame = 3 
Query:   15 VTAEGMPLVMLASPGAFGGSLQAFALHQGMGTWIRVADGRFALSDFYSSGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEYYDTLEM 770
            V   G+PL+  +S        Q +  H+ M TW++V D  FA+S F+ + P   G    G ++A         S    +L Q   A T      G    + A A       +S+Q  VT  HLE  +    + GSS E+   LR Y   LA  +     R+  LC  LL          G +                               P++LG  K +LL+++ LP LS NRSLQR+V EY   LEM
Sbjct:  754 VRQNGLPLLTTSSG-------QGYTYHEMMRTWVKVVDPWFAISSFFGTDPMLGGRDSFGDIAAPSV------SQKKGILSQLQAAAT-----GGRLEKDVAFAQELLNVEDSVQGVVTLTHLENQMAAAQVLGSSTEYKQWLRCYVQRLADESSVA--RVEELCKFLLGPVYQGGDKSGWQ-------------------------------PTILGFQKHELLREL-LPVLSSNRSLQRIVKEYLSGLEM 953
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A7R9XM61_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9XM61_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 4.610e-7
Identity = 48/129 (37.21%), Postives = 61/129 (47.29%), Query Frame = 3 
Query:  378 HLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEYYDTL 764
            HLE  + +  +  S  E+   L  YA HLAK A   + R+R LC  L+        +G                   ST  G I     G  P++LGLSK DLLK  VLPA+S NR +QRL+SE  D L
Sbjct:    7 HLESLIASANVLNSPHEYSKWLITYARHLAKDAD--ENRLRELCLDLIGPVRQFRSNG----------------VGPSTWSGSIDVSEDGWKPNILGLSKRDLLKRGVLPAMSTNRQMQRLLSEISDML 117
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A1Y1I787_KLENI (Protein HIRA n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I787_KLENI)

HSP 1 Score: 63.9 bits (154), Expect = 1.110e-6
Identity = 66/238 (27.73%), Postives = 93/238 (39.08%), Query Frame = 3 
Query:   78 QAFALHQGMGTWIRVADGRFALSDFYS-SGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQ----------SAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEYYD 758
            +A   H GM  W+R+AD  F  S+F S  G   SG  +  +                                   T+ +A +AA G  RR               A +R HLE  L   V   S  E+   L AYA HL + A   +GR+R LC + L    + S+                                   G SVLG+SK +LL+ V+LPA+S NR++QRL++E+ D
Sbjct:  786 EAHMYHLGMRCWLRIADESFPASEFTSVRGADASGHEKEDL-----------------------------------TVLQAEVAAQGRGRRGLFNPLLDISAAEGQAQSRAHLESQLAAAVTMNSPTEYKRWLTAYARHLTREAD--EGRLRELCQEFLAPTGSGSE-----------------------------------GASVLGMSKRELLQAVILPAMSANRAVQRLLNEFLD 951
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A7S1VV58_9STRA (Protein HIRA n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV58_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.250e-6
Identity = 71/228 (31.14%), Postives = 100/228 (43.86%), Query Frame = 3 
Query:   66 GGSLQAFALHQGMGTWIRVADGRFALSDFYSSGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAGFGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSE 749
            GGSLQAF   + +  W+R+AD RF LSDFYS  P    ASR G L+ +   VR  SS      ++A R     +   G    E  + A             +R H E+ +   V  GSS EF   L  Y    A S G  + ++R L D ++          G +S           EA+  T         L +   +LG ++  L++  V+P +S NRSLQRL +E
Sbjct:  542 GGSLQAFLYDRSLELWMRMADSRFVLSDFYSILPSVRTASRKGDLAGMDDAVRGGSSSGS---IRAKRRNHDTSAMYGAPSGEGNLLA-------------SRSHCEDRMACAVALGSSHEFESWLVNYV--RALSIGGFEDQLRLLVDLIV----------GDDSR----------EALSKTPSC----WWLSSATQLLGFNRKTLVRKAVIPEMSKNRSLQRLTNE 727
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BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Match: A0A0M0JKY7_9EUKA (Protein hira-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKY7_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 2.530e-6
Identity = 70/222 (31.53%), Postives = 94/222 (42.34%), Query Frame = 3 
Query:  102 MGTWIRVADGRFALSDFYSSGPCTSGASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAATGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAG-FGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEILGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEYYDTL 764
            M  W+ + D  F  S++ SS P T G   GG  SA+  G   + S            G   A ++    + AAI           Q  V+  HLE  L          E+   LR YA  LA   G   + ++R LCD+LL   +  S S   +    G    A   A E           L   P VLGL K  LL++VVLP L+ NR+LQR+++EY D L
Sbjct:    1 MQAWLALGDEAFGASEYRSSLPSTFGP--GG--SAVMGGSAASDSXXXXXXXXXXXXGRHEASAARLAASLAAIP-------PDEQRLVSFAHLEHQLAACREIRQPAEYSAWLRVYAHALADKGGQLAERQVRELCDELLGPLDQPSLSSHSQPSLDGAPTAAHTPAAEMAETAP-----LAWQPGVLGLCKRMLLREVVLPELTTNRALQRILTEYLDQL 206
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9640.19097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KT61_9PHAE8.990e-6356.67Hira domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIQ6_9STRA2.100e-1738.53Protein HIRA n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2UMJ9_9STRA2.500e-1234.63Protein HIRA n=2 Tax=Attheya septentrionalis TaxID... [more]
A0A7S2WVS7_9STRA3.990e-1232.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Y2GTF8_9FUNG7.250e-828.57Protein HIR n=1 Tax=Lobosporangium transversale Ta... [more]
A0A7R9XM61_9CHLO4.610e-737.21Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A1Y1I787_KLENI1.110e-627.73Protein HIRA n=1 Tax=Klebsormidium nitens TaxID=10... [more]
A0A7S1VV58_9STRA2.250e-631.14Protein HIRA n=1 Tax=Grammatophora oceanica TaxID=... [more]
A0A0M0JKY7_9EUKA2.530e-631.53Protein hira-like protein n=1 Tax=Chrysochromulina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9640contigF-distichus_contig9640:7421..11338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.3
Seed ortholog evalue4.8e-58
Seed eggNOG ortholog2880.D8LCZ9
Preferred nameHIRA
KEGG koko:K11293
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000070,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000417,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0001503,GO:0001649,GO:0001673,GO:0001674,GO:0003674,GO:0003682,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007275,GO:0007338,GO:0007369,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009566,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016604,GO:0016605,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030447,GO:0030448,GO:0030466,GO:0030702,GO:0030874,GO:0030875,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031497,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034401,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035042,GO:0040007,GO:0040029,GO:0042585,GO:0042692,GO:0043044,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048598,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0060968,GO:0061061,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097549,GO:0097659,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1900239,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA replication-independent nucleosome assembly
EggNOG OGsKOG0973@1,KOG0973@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size2353
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9640.19097.1prot_F-distichus_contig9640.19097.1Fucus distichus monoicouspolypeptideF-distichus_contig9640 8320..11309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.8460581-UTR-F-distichus_contig9640:7420..83191622931141.8460581-UTR-F-distichus_contig9640:7420..8319Fucus distichus monoicousUTRF-distichus_contig9640 7421..8319 -
1690886176.0797281-UTR-F-distichus_contig9640:7420..83191690886176.0797281-UTR-F-distichus_contig9640:7420..8319Fucus distichus monoicousUTRF-distichus_contig9640 7421..8319 -
1622931141.9408836-UTR-F-distichus_contig9640:11309..113381622931141.9408836-UTR-F-distichus_contig9640:11309..11338Fucus distichus monoicousUTRF-distichus_contig9640 11310..11338 -
1690886176.1590972-UTR-F-distichus_contig9640:11309..113381690886176.1590972-UTR-F-distichus_contig9640:11309..11338Fucus distichus monoicousUTRF-distichus_contig9640 11310..11338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.8688684-CDS-F-distichus_contig9640:8319..90781622931141.8688684-CDS-F-distichus_contig9640:8319..9078Fucus distichus monoicousCDSF-distichus_contig9640 8320..9078 -
1690886176.1073592-CDS-F-distichus_contig9640:8319..90781690886176.1073592-CDS-F-distichus_contig9640:8319..9078Fucus distichus monoicousCDSF-distichus_contig9640 8320..9078 -
1622931141.882429-CDS-F-distichus_contig9640:9331..95331622931141.882429-CDS-F-distichus_contig9640:9331..9533Fucus distichus monoicousCDSF-distichus_contig9640 9332..9533 -
1690886176.1207054-CDS-F-distichus_contig9640:9331..95331690886176.1207054-CDS-F-distichus_contig9640:9331..9533Fucus distichus monoicousCDSF-distichus_contig9640 9332..9533 -
1622931141.8985388-CDS-F-distichus_contig9640:9835..101951622931141.8985388-CDS-F-distichus_contig9640:9835..10195Fucus distichus monoicousCDSF-distichus_contig9640 9836..10195 -
1690886176.1400084-CDS-F-distichus_contig9640:9835..101951690886176.1400084-CDS-F-distichus_contig9640:9835..10195Fucus distichus monoicousCDSF-distichus_contig9640 9836..10195 -
1622931141.9185765-CDS-F-distichus_contig9640:11205..113091622931141.9185765-CDS-F-distichus_contig9640:11205..11309Fucus distichus monoicousCDSF-distichus_contig9640 11206..11309 -
1690886176.149603-CDS-F-distichus_contig9640:11205..113091690886176.149603-CDS-F-distichus_contig9640:11205..11309Fucus distichus monoicousCDSF-distichus_contig9640 11206..11309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9640.19097.1

>prot_F-distichus_contig9640.19097.1 ID=prot_F-distichus_contig9640.19097.1|Name=mRNA_F-distichus_contig9640.19097.1|organism=Fucus distichus monoicous|type=polypeptide|length=475bp
MPLVMLASPGAFGGSLQAFALHQGMGTWIRVADGRFALSDFYSSGPCTSG
ASRGGVLSALQTGVRVASSPTPAVLLQASRAGTRPAGSSGTTLTEAAIAA
TGGVRRESLQSAVTRGHLEESLGNTVLFGSSQEFVDVLRAYAGHLAKSAG
FGDGRIRALCDKLLLAANTHSQSGGMESMSGGVMAVAGCEAVESTRRGEI
LGLRLGNGPSVLGLSKIDLLKDVVLPALSGNRSLQRLVSEYYDTLEMSCE
LLPPPARPLVPASIAPASRRLENGAPPPLTSSSAGGGSEPSQSISNTSAI
TPVAGRDGSTRPAPRSNPDAESSLGSSSAIGIAIDNDKLPLGSVEYGRDR
ADPDPGRSYKQKRLQLKEGGNNAAAVDMRRPADSASRGLGANSLSRDIND
SYAAGCNTDVGNIAQENGRTCADVGSSGGPEGVQKGVSRGNGSLETAGKS
GVYAEGGAPPSGDSVNAATVMATR*
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mRNA from alignment at F-distichus_contig9640:7421..11338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9640.19097.1 ID=mRNA_F-distichus_contig9640.19097.1|Name=mRNA_F-distichus_contig9640.19097.1|organism=Fucus distichus monoicous|type=mRNA|length=3918bp|location=Sequence derived from alignment at F-distichus_contig9640:7421..11338- (Fucus distichus monoicous)
TGGTCAGAGCCGGGGTCACGGCCGAGGGGATGCCGTTGGTGATGCTGGCG
AGCCCCGGGGCGTTTGGCGGATCGCTGCAGGCGTTTGCGCTTCATCAGGG
AATGGGGACGTGGATCCGAGTCGCAGATGGAAGGTAACCTAAGCGTACAC
TACATTCGTAGCCCCTATATGTATATATGTATGATCACCCATCTAGAAAG
AGTATGGATCAATCGGGTAAGGTTGCCAATCTTGCATGTGGTCAGCTGAA
CAGGGAAAATTAATATTTCCCTGTCCGCGTTCGCGCCTGAGAATTTAGTC
TCGCAAGACGAGTTCGCCAGTATTATCCCGCTTCAGCCTGCTCATCTCCA
TGCTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGC
GGCGGCGTCCATGTATTTATTTTAAACCGTCATACGTCATCGGGTCAGTC
CCGAGTTTATCGGGTCACGCAATTTCGTATCGATGGCGTTCACTGCCGAG
AGTCCGCTGGCACAGGGCCACTAAACCTCAAGGTAGTTCCGAACCAGTGC
TGCTGCCTTGGCAGGTCATCATGGACCAATAACTGATATGCGCCTCTTTT
TCCCACCCTCTATTGGTGTGAAGTGAGCTTACCTGTGCCTGATTAAAACC
TCTGTACTGTACTTGTAAATACCACGAAGATACTTGTTGAATTAACAGAC
TCATCATCTTTCCCCTTCCTCACCCTCTATTGGTGTGAAGTGAGCTTACC
TCTGCCTGATTAAAACCTCTGTGCTGTACTTGTAAAGACCACTAAAATAC
TTGTTGTATTAATAGACTCACCTCTCCCATTCCAACAAACAATTGCTTAA
TCCTCCTCCTGTTATGTACCTGGTACATTATTTCTTACGCATTCACCAAG
AGACTAGATTTTATGGTACTTACTGTAGGTTGTTTACGCCTGCTGTATTA
CCGTAAAACCCCTAGTAATATAGTAATAGTAAATGCACCGGCGAGTCAGG
GCGCAAGTGCAAGGGTAGTGATTCGTGGGGCAAGAGTATGTCTCTGAGGG
TTGGGTGCGAGGGTCCTTGGCTTGACTCGTTGCGGTTCCGTCCTTGTTTC
TATTTCTATTTTCAACCGCTCTTTTGCTCCTTCCTACGCCCAGGTTCGCC
CTCTCCGACTTCTATTCGTCAGGTCCGTGTACCTCGGGGGCAAGCAGGGG
AGGAGTGCTGTCTGCGCTTCAGACCGGGGTTCGGGTTGCATCGTCCCCTA
CCCCGGCGGTGCTCTTGCAGGCCTCGCGAGCCGGTACGCGGCCGGCAGGA
TCGTCGGGAACGACGTTGACGGAGGCGGCAATCGCAGCGACCGGCGGCGT
GAGAAGGGAGAGTCTCCAGTCAGCTGTAACCAGAGGTCACCTGGAGGAAT
CTCTGGGTAACACTGTGCTGTTTGGCAGCTCTCAGGAGTTTGTCGATGTC
TTGAGGGCGTACGCAGGGCACCTGGCCAAGAGCGCTGGATTTGGAGACGG
CAGGTTCGTCGCTCGGCGATTACTCCGGCACGTCAGAATTTGCCGGAGTA
GGGTTGGGTCCGCATCAGTTATGGGATCAACCGTTAAACTATCAAATTAT
AAAACAGTCGTAGTTTACGCCAGAGAGATGTGTACATTCTTCTACGAAGT
GGTCACGTCCTTCCTGTTGAGCCTTGCGACTTTTTATTGCGTCCTTTCAT
TATCTTCCGAGATTCGTCGCTCGTAAACGTTGTCTGCTCTCGCCCTCACC
CCTCCCTTCCCATCCTTGTCCCTACGCGCGTTTTTTTTTGCTCGAATCGC
TACAGGATCAGAGCGCTGTGCGACAAACTGCTTCTCGCGGCAAATACGCA
CTCGCAAAGCGGCGGCATGGAAAGCATGTCCGGGGGGGTGATGGCGGTAG
CGGGCTGCGAGGCAGTCGAATCGACCAGAAGAGGAGAAATACTGGGGCTG
CGCCTGGGAAATGGGCCTTCTGTGCTGGGTTTGAGCAAGATCGATCTCCT
CAAGGACGTGAGAGGCGGGCCGTGTCGGTATAATAACTCTGTTTTCTCCG
GGAACGTCGGAATAACGAAGAAAATATATATATGGTTATATCAAAGGTGG
TGTGTGCACAGTAGTGTCACATAGTCTATCGCAGGAGCCGGCCAGTCGAA
GCCATGGCTCCATTCCTGGTAACGCCTTGCACGTTTGAGCGTTATCGCGC
ATGTGCCAGCACGTCTCACGTGTCACGTTTCCCACCTCGTCTTGCGTCGA
CCTCCATCAGGTCGTCCTGCCGGCACTCAGCGGTAATCGCAGCCTTCAGC
GCCTGGTCAGCGAATACTACGACACTCTCGAGATGTCCTGCGAGTTACTG
CCTCCACCAGCACGGCCATTAGTGCCAGCGTCGATAGCTCCAGCCTCCCG
GCGTTTAGAAAACGGTGCCCCTCCACCCCTGACCAGTAGTAGTGCTGGCG
GCGGAAGCGAACCTTCTCAGAGTATCTCCAACACGAGTGCCATCACCCCC
GTTGCTGGCAGAGATGGGAGTACCCGTCCTGCGCCAAGAAGCAACCCCGA
CGCGGAAAGCAGCTTAGGATCCTCGTCCGCGATAGGGATTGCGATCGACA
ATGATAAGCTCCCCTTGGGTAGCGTTGAATATGGTCGCGACCGTGCGGAC
CCCGACCCTGGCCGAAGCTACAAGCAGAAGCGGCTGCAGTTGAAGGAGGG
TGGCAACAATGCGGCGGCCGTGGACATGCGCCGCCCTGCCGACTCTGCCT
CCCGTGGCCTCGGAGCAAACTCACTCAGTCGCGACATCAACGATTCGTAC
GCCGCTGGTTGTAACACTGACGTCGGCAATATTGCTCAGGAAAACGGTCG
AACATGCGCGGACGTCGGCTCGAGCGGCGGGCCAGAAGGTGTCCAAAAGG
GCGTTAGTAGAGGAAACGGCTCGCTGGAAACCGCAGGGAAGAGCGGGGTT
TACGCTGAAGGTGGCGCGCCTCCGAGTGGGGATTCGGTGAATGCTGCGAC
CGTGATGGCGACTCGATAGGGTGTGGTTTGAGGGCAGGCCGTGTGAGGTG
GAAGAGTTAAAACTGTTTAAGGCAAGAGGTCGGTGGGGCTCGACTACTGA
GGGGGCGTCACATCGACGGTACGTGATGGGATACGACGTGTCGGTCGGAT
TTGGGTGTGTACATGGGTTCCGGGGTATTTGCCGCTCGTGCGATCGATTC
AGCATGTTTTATACTGTAGTAGTGTGTGTAGTTTTCGCCCGCTGCAAATA
ATTATATACGCTCGGTGTCCCTGGGCGTCGGCCGCGAATATCGAGATTTT
ACAGTCAGGGGGCCGCAATAGGCTAGTGCGCGGCCCGGAAGGGTCAAGGT
AGAAGCCCGCGTTTTCTGGGTAGGGTGTAAAAGTTCAGGCTGTTTTTAAA
ATAAGATGTCGGCAAAGAGCACGACTGCTGCAGAAGCGTGGCACGACGCT
TCGTGGGGGAGTGGTGCCAGTCGGGTGTGGGTATAGGCGGGTGGTGCCTG
CCCTGCGCTTGTCTCCATTAGGTCATTTCTATAGTTTGGGCGCGCCTGCA
TGGTCTCTTCGAATACTGCGGCATGACTGTACTGTAGCATGTCGGTGTCC
TCCGCTGCAATTATTTATGGGCGCTCGGGGTCCCGGGCGTCTGCCGGATG
CCGACCGTGACCAGTCCGTTCCGTTAGGGACCCCTCGAGGCTAAAGAGCG
CGCAGATGATTCCTGTCTTTTCATCCGCTTGGTTTTGAGCAACACTTTGT
TGCACATGGATGTTATGGGCCCCGAGTCTCGCGACGCAACCCCGACTCGT
TGGAAACCTGACAGGCGTTGCGTGTACAGGAAACAAGAAGTTACTCCGAT
GAAACCAATGCGCTATAGAAAACGACATGAAAATATTTTACTTTTAGAAT
GGAGCGAAGAAAACAGCC
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Coding sequence (CDS) from alignment at F-distichus_contig9640:7421..11338-

>mRNA_F-distichus_contig9640.19097.1 ID=mRNA_F-distichus_contig9640.19097.1|Name=mRNA_F-distichus_contig9640.19097.1|organism=Fucus distichus monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at F-distichus_contig9640:7421..11338- (Fucus distichus monoicous)
ATGCCGTTGGTGATGCTGGCGAGCCCCGGGGCGTTTGGCGGATCGCTGCA
GGCGTTTGCGCTTCATCAGGGAATGGGGACGTGGATCCGAGTCGCAGATG
GAAGATGCCGTTGGTGATGCTGGCGAGCCCCGGGGCGTTTGGCGGATCGC
TGCAGGCGTTTGCGCTTCATCAGGGAATGGGGACGTGGATCCGAGTCGCA
GATGGAAGGTTCGCCCTCTCCGACTTCTATTCGTCAGGTCCGTGTACCTC
GGGGGCAAGCAGGGGAGGAGTGCTGTCTGCGCTTCAGACCGGGGTTCGGG
TTGCATCGTCCCCTACCCCGGCGGTGCTCTTGCAGGCCTCGCGAGCCGGT
ACGCGGCCGGCAGGATCGTCGGGAACGACGTTGACGGAGGCGGCAATCGC
AGCGACCGGCGGCGTGAGAAGGGAGAGTCTCCAGTCAGCTGTAACCAGAG
GTCACCTGGAGGAATCTCTGGGTAACACTGTGCTGTTTGGCAGCTCTCAG
GAGTTTGTCGATGTCTTGAGGGCGTACGCAGGGCACCTGGCCAAGAGCGC
TGGATTTGGAGACGGCAGGTTCGCCCTCTCCGACTTCTATTCGTCAGGTC
CGTGTACCTCGGGGGCAAGCAGGGGAGGAGTGCTGTCTGCGCTTCAGACC
GGGGTTCGGGTTGCATCGTCCCCTACCCCGGCGGTGCTCTTGCAGGCCTC
GCGAGCCGGTACGCGGCCGGCAGGATCGTCGGGAACGACGTTGACGGAGG
CGGCAATCGCAGCGACCGGCGGCGTGAGAAGGGAGAGTCTCCAGTCAGCT
GTAACCAGAGGTCACCTGGAGGAATCTCTGGGTAACACTGTGCTGTTTGG
CAGCTCTCAGGAGTTTGTCGATGTCTTGAGGGCGTACGCAGGGCACCTGG
CCAAGAGCGCTGGATTTGGAGACGGCAGGATCAGAGCGCTGTGCGACAAA
CTGCTTCTCGCGGCAAATACGCACTCGCAAAGCGGCGGCATGGAAAGCAT
GTCCGGGGGGGTGATGGCGGTAGCGGGCTGCGAGGCAGTCGAATCGACCA
GAAGAGGAGAAATACTGGGGCTGCGCCTGGGAAATGGGCCTTCTGTGCTG
GGTTTGAGCAAGATCGATCTCCTCAAGGACGATCAGAGCGCTGTGCGACA
AACTGCTTCTCGCGGCAAATACGCACTCGCAAAGCGGCGGCATGGAAAGC
ATGTCCGGGGGGGTGATGGCGGTAGCGGGCTGCGAGGCAGTCGAATCGAC
CAGAAGAGGAGAAATACTGGGGCTGCGCCTGGGAAATGGGCCTTCTGTGC
TGGGTTTGAGCAAGATCGATCTCCTCAAGGACGTCGTCCTGCCGGCACTC
AGCGGTAATCGCAGCCTTCAGCGCCTGGTCAGCGAATACTACGACACTCT
CGAGATGTCCTGCGAGTTACTGCCTCCACCAGCACGGCCATTAGTGCCAG
CGTCGATAGCTCCAGCCTCCCGGCGTTTAGAAAACGGTGCCCCTCCACCC
CTGACCAGTAGTAGTGCTGGCGGCGGAAGCGAACCTTCTCAGAGTATCTC
CAACACGAGTGCCATCACCCCCGTTGCTGGCAGAGATGGGAGTACCCGTC
CTGCGCCAAGAAGCAACCCCGACGCGGAAAGCAGCTTAGGATCCTCGTCC
GCGATAGGGATTGCGATCGACAATGATAAGCTCCCCTTGGGTAGCGTTGA
ATATGGTCGCGACCGTGCGGACCCCGACCCTGGCCGAAGCTACAAGCAGA
AGCGGCTGCAGTTGAAGGAGGGTGGCAACAATGCGGCGGCCGTGGACATG
CGCCGCCCTGCCGACTCTGCCTCCCGTGGCCTCGGAGCAAACTCACTCAG
TCGCGACATCAACGATTCGTACGCCGCTGGTTGTAACACTGACGTCGGCA
ATATTGCTCAGGAAAACGGTCGAACATGCGCGGACGTCGGCTCGAGCGGC
GGGCCAGAAGGTGTCCAAAAGGGCGTTAGTAGAGGAAACGGCTCGCTGGA
AACCGCAGGGAAGAGCGGGGTTTACGCTGAAGGTGGCGCGCCTCCGAGTG
GGGATTCGGTGAATGCTGCGACCGTGATGGCGACTCGATAGGTCGTCCTG
CCGGCACTCAGCGGTAATCGCAGCCTTCAGCGCCTGGTCAGCGAATACTA
CGACACTCTCGAGATGTCCTGCGAGTTACTGCCTCCACCAGCACGGCCAT
TAGTGCCAGCGTCGATAGCTCCAGCCTCCCGGCGTTTAGAAAACGGTGCC
CCTCCACCCCTGACCAGTAGTAGTGCTGGCGGCGGAAGCGAACCTTCTCA
GAGTATCTCCAACACGAGTGCCATCACCCCCGTTGCTGGCAGAGATGGGA
GTACCCGTCCTGCGCCAAGAAGCAACCCCGACGCGGAAAGCAGCTTAGGA
TCCTCGTCCGCGATAGGGATTGCGATCGACAATGATAAGCTCCCCTTGGG
TAGCGTTGAATATGGTCGCGACCGTGCGGACCCCGACCCTGGCCGAAGCT
ACAAGCAGAAGCGGCTGCAGTTGAAGGAGGGTGGCAACAATGCGGCGGCC
GTGGACATGCGCCGCCCTGCCGACTCTGCCTCCCGTGGCCTCGGAGCAAA
CTCACTCAGTCGCGACATCAACGATTCGTACGCCGCTGGTTGTAACACTG
ACGTCGGCAATATTGCTCAGGAAAACGGTCGAACATGCGCGGACGTCGGC
TCGAGCGGCGGGCCAGAAGGTGTCCAAAAGGGCGTTAGTAGAGGAAACGG
CTCGCTGGAAACCGCAGGGAAGAGCGGGGTTTACGCTGAAGGTGGCGCGC
CTCCGAGTGGGGATTCGGTGAATGCTGCGACCGTGATGGCGACTCGATAG
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