mRNA_F-distichus_contig9637.19093.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9637.19093.1
Unique NamemRNA_F-distichus_contig9637.19093.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9637.19093.1 vs. uniprot
Match: A0A1Z5JD46_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD46_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-9
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1 
Query:  412 LCRYNAAVATGCGYPEQASFWALLAIAVDKEACSRQNASSCSLVGARWHAGWKGTASRSIEKALRYFENIGDPQMLASMVCVLGCASKGG-GYGTLLPQGQENVAKYDRYLASYAEQLYQWSAHRVRTEIISHI 810
            +C +NA +       E+   W L+A  VD     R N +S +       +G    +   I+  L+Y+E++GD QMLAS+VCVL   +    G G L+P  +E   KYD Y+  YA+ LY WS   VR E++ H+
Sbjct:  926 ICLHNAQICKSVDEIEKHEVWCLIAQLVDM----RLNETSRTRFDGWGQSGGMSFSVSLIDNLLKYYESLGDIQMLASIVCVLRSKNDSSRGAGKLIPNIREE--KYDIYIRRYADLLYGWSLLIVRAEVLKHL 1053
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BLAST of mRNA_F-distichus_contig9637.19093.1 vs. uniprot
Match: A0A1Z5K3F9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3F9_FISSO)

HSP 1 Score: 64.7 bits (156), Expect = 5.100e-8
Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:  412 LCRYNAAVATGCGYPEQASFWALLAIAVDKEACSRQNASSCSLVGARWHAGWKGTASRSIEKALRYFENIGDPQMLASMVCVLGCASKGG-GYGTLLPQGQENVAKYDRYLASYAEQLYQWSAHRVRTEIISHI 810
            +C +NA +       E+   W L+A  VD     R N +S +        G        I+  L+Y+E++GD QMLAS+VCVL   +  G   G L+   +E   KYD Y+  YA+ LY W    VR E++ H+
Sbjct:  931 VCLHNAQICKSFDEIEKHEVWCLIAQLVDM----RLNETSRTRFDGWGEFGGMSFRVSLIDNLLKYYESLGDVQMLASIVCVLRSKNDSGLDAGKLISDNREG--KYDIYIRRYADLLYGWGLLTVRAEVLKHL 1058
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9637.19093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Z5JD46_FISSO1.100e-935.07Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K3F9_FISSO5.100e-833.58Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9637contigF-distichus_contig9637:7073..10327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7FRA1
KEGG koko:K20409
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsCOG2319@1,KOG0309@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size839
Cds size837
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9637.19093.1prot_F-distichus_contig9637.19093.1Fucus distichus monoicouspolypeptideF-distichus_contig9637 7073..10327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.2938685-CDS-F-distichus_contig9637:7072..73581622931141.2938685-CDS-F-distichus_contig9637:7072..7358Fucus distichus monoicousCDSF-distichus_contig9637 7073..7358 -
1690886175.7920039-CDS-F-distichus_contig9637:7072..73581690886175.7920039-CDS-F-distichus_contig9637:7072..7358Fucus distichus monoicousCDSF-distichus_contig9637 7073..7358 -
1622931141.3154771-CDS-F-distichus_contig9637:7763..78471622931141.3154771-CDS-F-distichus_contig9637:7763..7847Fucus distichus monoicousCDSF-distichus_contig9637 7764..7847 -
1690886175.8050966-CDS-F-distichus_contig9637:7763..78471690886175.8050966-CDS-F-distichus_contig9637:7763..7847Fucus distichus monoicousCDSF-distichus_contig9637 7764..7847 -
1622931141.3326805-CDS-F-distichus_contig9637:8141..83331622931141.3326805-CDS-F-distichus_contig9637:8141..8333Fucus distichus monoicousCDSF-distichus_contig9637 8142..8333 -
1690886175.8183289-CDS-F-distichus_contig9637:8141..83331690886175.8183289-CDS-F-distichus_contig9637:8141..8333Fucus distichus monoicousCDSF-distichus_contig9637 8142..8333 -
1622931141.3529959-CDS-F-distichus_contig9637:9591..97221622931141.3529959-CDS-F-distichus_contig9637:9591..9722Fucus distichus monoicousCDSF-distichus_contig9637 9592..9722 -
1690886175.8277807-CDS-F-distichus_contig9637:9591..97221690886175.8277807-CDS-F-distichus_contig9637:9591..9722Fucus distichus monoicousCDSF-distichus_contig9637 9592..9722 -
1622931141.376332-CDS-F-distichus_contig9637:10183..103271622931141.376332-CDS-F-distichus_contig9637:10183..10327Fucus distichus monoicousCDSF-distichus_contig9637 10184..10327 -
1690886175.8370728-CDS-F-distichus_contig9637:10183..103271690886175.8370728-CDS-F-distichus_contig9637:10183..10327Fucus distichus monoicousCDSF-distichus_contig9637 10184..10327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9637.19093.1

>prot_F-distichus_contig9637.19093.1 ID=prot_F-distichus_contig9637.19093.1|Name=mRNA_F-distichus_contig9637.19093.1|organism=Fucus distichus monoicous|type=polypeptide|length=279bp
RWELSGARRGLPPRLGKHKQPEMEMEMEVEMEMEMAFSRMGSPHQPRYVE
QTAGRGDSGTQDRRTAQHQAKWINSSTTISSNDSSSGVSVSRKLDGDDQC
VSPALGTRSRNILQSRSSAEVGRAGVGARSTEEYCAYLCRYNAAVATGCG
YPEQASFWALLAIAVDKEACSRQNASSCSLVGARWHAGWKGTASRSIEKA
LRYFENIGDPQMLASMVCVLGCASKGGGYGTLLPQGQENVAKYDRYLASY
AEQLYQWSAHRVRTEIISHIRGGSQKLFS
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mRNA from alignment at F-distichus_contig9637:7073..10327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9637.19093.1 ID=mRNA_F-distichus_contig9637.19093.1|Name=mRNA_F-distichus_contig9637.19093.1|organism=Fucus distichus monoicous|type=mRNA|length=3255bp|location=Sequence derived from alignment at F-distichus_contig9637:7073..10327- (Fucus distichus monoicous)
CGGTGGGAGCTGTCAGGAGCTAGACGAGGCCTTCCCCCGCGACTTGGCAA
ACACAAACAGCCCGAGATGGAGATGGAGATGGAGGTGGAGATGGAGATGG
AGATGGCCTTCAGCCGTATGGGTAGTCCTCATCAGCCACGATACGTGAGG
CCGATAACGATATGCCACTCTCTACTCTCCCACACGATTCTTGATGCCTG
ATGCCTCGTGTGACACGAGTACTGCGGAGCCGTTGTGCTCGAGAGATGGT
GGACATATGGGCAGACAGACACGTAGCATACAGTATCATAGAGCCTACCC
GTGCTGCATGACCCGGTATACGATACGATATACTGAATGCTGCATGACCC
ATCAAAAGCCTCATACATTTTACGATATATTTACTACGTGCTATTATTAG
TACGATAATACTATAATTGCACATTGTACATTGTACATTGTACGTTGTAC
GTTGTACGTTGCGATGCAAGCCCATGTGTTGTCTATACTATATCCTACAA
TATGTTACAACACAGCAGCTATATCGGGCAGCGTCTTAAAAGCCTGGGAA
CGCTAAGGGGGTGCTGACATTTTCTTGCCGCGATACTTGCCATGCCCATC
GGCAGGTAGAACAGACAGCGGGAAGAGGCGATTCGGGTACGCAGGACCGC
CGAACCGCTCAACACCAAGCGAAATGGATTAACTCCAGCACCACCATCAG
CAGCAACGACAGCAGCTCTGGTGTTTCTGTCTCAAGGTAGGCGTTTTCGA
TATACTCGATGAAGATAGGAACACTGAAATGCTGCATACTCGAGGTTGGT
TGATTTAATGGGTTCTCGACTAAACCTCGAAGTAGGTTTCTTTGAAACAT
AGTTTACATTATATATAAGCAGAGCCCTCTGCCTCGAAATCCCGGTTCAG
ACGGAGGTGGTTCCTCCCTAATAGTCAATAGTCACGCCATAGTCACGTCT
TCGCGGCTCGCTCATCGCGCCAAGCAAAGCAAAGAGAGACCTTGGGTTTG
GCGTCCATCGCGTCGTGCACAAGCGATGAGCAGTTTGGGGTGGATATCGC
GCACATTTTCCGCTAGGTCATGTTTGATGTTTGATGTTTGCCATGGTCTA
TAGCGGGCAGGGAGGGCACCCGGTTTAAGTGCGGTTTGAACCCATGCGGC
AACCTGTAGGGCAAACAGCATACTTGTAGTACTTAGTGATTAGTGATTAG
TGATTAGTGATTCGTGATACTGTTGAGGAGCCCAAGGGAGGGAAAAACGA
TCCTGGTCATCCCGGTCATCCCTGCCATCACTTGCTACAGTAGACCAATC
ATATTACACCATCGACACCCAATACACCCAATCCTATCTTCTCCTCGGTC
ATGTCTTTACATCGGTCAAGTCATGAGGTCATGAAGCTCTTTCTCTTAAA
ACACTAGTATTGGTAGGATTACTACTTAACAGTACTGACAGTATTAATAC
TTCTTTTCAATAGGTCTTGGTGTCTTTTGTTGTAATATCATACTCCGTAG
CTTTTACTGGAAACACATTTGACTCATGTTATCCTACTGCGCATTGTTGT
GCTTGACACTTTTACACTTTTAGTTTACCAATGTATTGTTTATGTAAGGC
TGAATCTGGCGCTTACTTACGGGATTCCTCCCGAGTACCGCTTGTGCACA
CTATTAATACTGCATGCCACAGGATTTGACTTGACTCTACTCAAGAGCTG
CAGTATTTGACTGTACTCGACAGTAGTACTTGGACTGTACTGTATCGAAT
GTACTCTATCATATGGAAGTGCCGTACTCCTGCATTATTATTAATAGTGT
CCCGGACCGTATTAGTATTAATATTAATATAACAGCATACGTGACGTGTT
CATCCGACGGGAAACCTTTTGCTTGAAGTGCGGCGTCCGACGGCGTCTGC
GCTGCGCTCATGCTGCACTCCCCGTCACGCAATCTCCATCTGAGACAGAC
ACACTCATCTCACACTATTAAACTCCAATTTGACGTCTACGCAGGAAATT
GGATGGCGATGACCAATGTGTGTCCCCTGCCCTCGGCACCAGGTCCCGCA
ATATTTTGCAATCGCGAAGTTCCGCCGAGGTCGGTCGTGCGGGGGTCGGT
GCAAGGAGTACGGAGGAGTACTGCGCATATTTATGCAGATACAATGCTGC
GGTGGCTACGGGATGTGGCTATCCAGAACAGGCTAGGTGAGGCTATTATA
GGTGGGGTCCACCATGCCTTGCGCCTGCTATTGCCGTGATCATTAGTTTA
CTGGTACCGCGAAAAATGCTCCGAATGCTCGTGCTGTCAGGTAGATATGT
CTCCTAGACCCTGGTAAAACGAATCTTTTCATCGTGGCAAAAAAAGTGTG
TAAAAGTGTAAACGAGTCCCGGGTGATCTCGATATCTTGCGTCGCGGCCA
GAGCGGTTGGTGCAGTTCCTGTTCGATGCGGCGCGTTGAATCATGTCGGT
TTCTCCGTCTTTCTCTGTATGCGGGCGCAGTTTTTGGGCGTTGCTCGCGA
TTGCTGTCGACAAGGAAGCGTGCTCTCGGCAGAATGCCTCGAGCTGCTCG
TTGGTCGGAGCCAGGTATAGTGAGAACCCGAACATCGACATCAATACTAT
CAATGTCAAGAACAACTTTTCTCGGCGACGTCTTGGCGTTCTAGATAGTT
TTACATATTAATAGTATTACGGGGGCGTAAACTTGTTGTGTTTGAAGTTC
CGGCATGTTCTCGAGGAAATCCCTAATCGAAGCCGTTGTGTGCTGCCCGT
TGAAGTATGAAGGTCTAAACGCTCCTGTCACTGATTCGGGGCATTTTTCG
GTGGCTTTTGTCGCAAGCAACGGAACGTCCATGTATCGCCTCAGGTGTCT
TGTGTTGTTTTTTGCTGCAGATATGCCACACCAAACCTTTTCCCTCCCCA
GGCTGGATCGAGAAAACAAATACTGTGAATGAGTTCTGAATCCCGTACTG
GATGTATGTCGTATTTAAGGTGGCATGCCGGGTGGAAAGGCACTGCGTCG
CGTTCCATCGAAAAAGCGCTTCGCTACTTCGAGAATATCGGGGATCCGCA
GATGCTCGCGTCTATGGTGTGCGTGTTAGGCTGTGCTTCGAAGGGCGGTG
GGTACGGCACCCTCCTACCGCAGGGGCAAGAAAACGTGGCCAAGTACGAC
AGATACCTGGCGTCTTACGCAGAACAGCTCTACCAATGGAGCGCGCATCG
AGTTCGAACAGAGATAATCAGCCACATTCGGGGGGGGAGTCAAAAGCTCT
TTTCC
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Coding sequence (CDS) from alignment at F-distichus_contig9637:7073..10327-

>mRNA_F-distichus_contig9637.19093.1 ID=mRNA_F-distichus_contig9637.19093.1|Name=mRNA_F-distichus_contig9637.19093.1|organism=Fucus distichus monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at F-distichus_contig9637:7073..10327- (Fucus distichus monoicous)
CGGTGGGAGCTGTCAGGAGCTAGACGAGGCCTTCCCCCGCGACTTGGCAA
ACACAAACAGCCCGAGATGGAGATGGAGATGGAGGTGGAGATGGAGATGG
AGATGGCCTTCAGCCGTATGGGTAGTCCTCATCAGCCACGATACCGGTGG
GAGCTGTCAGGAGCTAGACGAGGCCTTCCCCCGCGACTTGGCAAACACAA
ACAGCCCGAGATGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGG
CCTTCAGCCGTATGGGTAGTCCTCATCAGCCACGATACGTAGAACAGACA
GCGGGAAGAGGCGATTCGGGTACGCAGGACCGCCGAACCGCTCAACACCA
AGCGAAATGGATTAACTCCAGCACCACCATCAGCAGCAACGACAGCAGCT
CTGGTGTTTCTGTCTCAAGGTAGAACAGACAGCGGGAAGAGGCGATTCGG
GTACGCAGGACCGCCGAACCGCTCAACACCAAGCGAAATGGATTAACTCC
AGCACCACCATCAGCAGCAACGACAGCAGCTCTGGTGTTTCTGTCTCAAG
GAAATTGGATGGCGATGACCAATGTGTGTCCCCTGCCCTCGGCACCAGGT
CCCGCAATATTTTGCAATCGCGAAGTTCCGCCGAGGTCGGTCGTGCGGGG
GTCGGTGCAAGGAGTACGGAGGAGTACTGCGCATATTTATGCAGATACAA
TGCTGCGGTGGCTACGGGATGTGGCTATCCAGAACAGGCTAGGAAATTGG
ATGGCGATGACCAATGTGTGTCCCCTGCCCTCGGCACCAGGTCCCGCAAT
ATTTTGCAATCGCGAAGTTCCGCCGAGGTCGGTCGTGCGGGGGTCGGTGC
AAGGAGTACGGAGGAGTACTGCGCATATTTATGCAGATACAATGCTGCGG
TGGCTACGGGATGTGGCTATCCAGAACAGGCTAGTTTTTGGGCGTTGCTC
GCGATTGCTGTCGACAAGGAAGCGTGCTCTCGGCAGAATGCCTCGAGCTG
CTCGTTGGTCGGAGCCAGTTTTTGGGCGTTGCTCGCGATTGCTGTCGACA
AGGAAGCGTGCTCTCGGCAGAATGCCTCGAGCTGCTCGTTGGTCGGAGCC
AGGTGGCATGCCGGGTGGAAAGGCACTGCGTCGCGTTCCATCGAAAAAGC
GCTTCGCTACTTCGAGAATATCGGGGATCCGCAGATGCTCGCGTCTATGG
TGTGCGTGTTAGGCTGTGCTTCGAAGGGCGGTGGGTACGGCACCCTCCTA
CCGCAGGGGCAAGAAAACGTGGCCAAGTACGACAGATACCTGGCGTCTTA
CGCAGAACAGCTCTACCAATGGAGCGCGCATCGAGTTCGAACAGAGATAA
TCAGCCACATTCGGGGGGGGAGTCAAAAGCTCTTTTCCGTGGCATGCCGG
GTGGAAAGGCACTGCGTCGCGTTCCATCGAAAAAGCGCTTCGCTACTTCG
AGAATATCGGGGATCCGCAGATGCTCGCGTCTATGGTGTGCGTGTTAGGC
TGTGCTTCGAAGGGCGGTGGGTACGGCACCCTCCTACCGCAGGGGCAAGA
AAACGTGGCCAAGTACGACAGATACCTGGCGTCTTACGCAGAACAGCTCT
ACCAATGGAGCGCGCATCGAGTTCGAACAGAGATAATCAGCCACATTCGG
GGGGGGAGTCAAAAGCTCTTTTCC
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