mRNA_F-distichus_contig96271.19078.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96271.19078.1
Unique NamemRNA_F-distichus_contig96271.19078.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: D7FJQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.330e-45
Identity = 73/96 (76.04%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 PQNLAKVAASIEARKKKEADAIPEAYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            P+NLAKVAASIEARK+KEA+ +PEA G+LARDPQQMELSGAGL AKR++D+MVELTW TG E+GN+GFIV+RR  KT++W+EIAS+K+FPPLNSKG
Sbjct:   97 PENLAKVAASIEARKEKEANTVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKG 192
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A835Z5V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.120e-29
Identity = 53/96 (55.21%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 PQNLAKVAASIEARKKKEADAIPEAYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            P+N+AKV A++EAR+  + + + E+ G LARDPQ MELSG GL  K++  + VEL W TG+E GNLGF+V++R+GKT++W +IAS+K++ PLNSKG
Sbjct:   93 PENIAKVEAAMEARRLAKLNTVAESVGDLARDPQAMELSGLGLNIKQVNGNDVELEWKTGDEAGNLGFVVSKRRGKTDEWTQIASYKDWAPLNSKG 188
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A7S3U5L1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5L1_9SPIT)

HSP 1 Score: 90.5 bits (223), Expect = 6.140e-20
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 PQNLAKVAASIEARKKKEADAIPEAYGSLARDPQQMEL-SGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            P+ +A+  A  +ARK+++  A  E   +L+ DPQ  EL +G GLK+K I++D VEL W+TG E+GN GFIV RRKG ++ +E++A+F+NF PL SKG
Sbjct:   95 PEAIARAEAERKARKERQMAAAKE-LDTLSIDPQAAELGAGGGLKSKIISEDEVELKWSTGNEEGNAGFIVQRRKGGSDSFEDLATFENFAPLKSKG 190
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A6V1RAY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RAY1_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 1.970e-17
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   73 AYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            A G+L  DPQ MELSG GLK K + D+  E++W TG+E GN GFI+ +R+G ++ W+ +AS+ ++ PLNSKG
Sbjct:  113 AQGALLVDPQAMELSGVGLKTKMVGDEC-EISWGTGDETGNKGFIITKRRGGSDDWQVVASYTDWAPLNSKG 183
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A1Z5K495_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K495_FISSO)

HSP 1 Score: 82.0 bits (201), Expect = 7.130e-17
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   40 RKKKEADAIPEAYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            RK+KE +   +  GSL RD    ELSG GLK K + D  VEL WTTGEE    GFIV RR  KTEK+E +AS+ N+ PL SKG
Sbjct:  100 RKRKEQET--QVQGSLLRDSAFQELSGTGLKYK-VIDGAVELEWTTGEESNTQGFIVKRRPAKTEKFEVLASYANYGPLQSKG 179
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A7S2ZH41_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZH41_9RHOD)

HSP 1 Score: 80.1 bits (196), Expect = 3.290e-16
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   70 EAYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPP-LNSKG 288
            +A GSL  DPQ  EL+G GLK K + D+++ LTW+TG E+ N GF++ +RKGKT++W +IA F + P  L SKG
Sbjct:  132 DAVGSLRTDPQAQELAGVGLKYKSLGDELL-LTWSTGSERSNQGFVIRKRKGKTDEWIKIADFDSHPAELTSKG 204
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A7S2ZH05_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZH05_9RHOD)

HSP 1 Score: 80.1 bits (196), Expect = 5.550e-16
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   70 EAYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPP-LNSKG 288
            +A GSL  DPQ  EL+G GLK K + D+++ LTW+TG E+ N GF++ +RKGKT++W +IA F + P  L SKG
Sbjct:  132 DAVGSLRTDPQAQELAGVGLKYKSLGDELL-LTWSTGSERSNQGFVIRKRKGKTDEWIKIADFDSHPAELTSKG 204
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A7S0T6E7_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6E7_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 1.120e-15
Identity = 36/74 (48.65%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   70 EAYGSLARDPQQMELSGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPP-LNSKG 288
            +A G +A+DPQQ EL+G+GLK K + D++ ELTW TG+E GN+GF++ +R+GK++K+E +  +K+ P    SKG
Sbjct:  135 DAVGKMAKDPQQQELAGSGLKWKLLGDEL-ELTWATGDETGNVGFMLQKRRGKSDKFELVDDYKSLPATFQSKG 207
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A7S4MUH7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MUH7_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 7.190e-15
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   16 KVAASIEARKKKEA-DAIPEAYGSLARDPQQMEL-SGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            K+A + +AR++++A  A       +  DPQ  EL +G GLK+K ++++ VEL W+TG+E GN GFIV RRKG T  +E++ SF  F PL +KG
Sbjct:  124 KIAEAKKAREERKARSAAASRQDQMLIDPQAAELGAGGGLKSKVLSEEEVELRWSTGDETGNAGFIVQRRKGGTNAFEDLESFATFAPLKTKG 216
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BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Match: A0A7S3WHE7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WHE7_EMIHU)

HSP 1 Score: 77.0 bits (188), Expect = 8.660e-15
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   88 ARDPQQMEL-SGAGLKAKRIADDMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG 288
            A DPQ  EL +G GLK+K +++D VEL W+TG E+GN GFIV RR+G T+ + ++ SF++F PL +KG
Sbjct:  138 AMDPQAAELGAGGGLKSKILSEDEVELKWSTGNEEGNAGFIVQRRQGGTDAFADLESFESFAPLRTKG 205
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96271.19078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FJQ9_ECTSI4.330e-4576.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5V8_9STRA1.120e-2955.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3U5L1_9SPIT6.140e-2049.48Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A6V1RAY1_HETAK1.970e-1751.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5K495_FISSO7.130e-1755.42Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2ZH41_9RHOD3.290e-1651.35Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZH05_9RHOD5.550e-1651.35Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0T6E7_9RHOD1.120e-1548.65Hypothetical protein n=2 Tax=Erythrolobus madagasc... [more]
A0A7S4MUH7_9EUKA7.190e-1545.16Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S3WHE7_EMIHU8.660e-1552.94Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96271contigF-distichus_contig96271:641..2174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3.1e-36
Seed eggNOG ortholog2880.D7FJQ9
Hectar predicted targeting categoryother localisation
EggNOG OGs2CYRZ@1,2S61B@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010550.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.8586886-CDS-F-distichus_contig96271:640..8261622931139.8586886-CDS-F-distichus_contig96271:640..826Fucus distichus monoicousCDSF-distichus_contig96271 641..826 -
1690886175.1327343-CDS-F-distichus_contig96271:640..8261690886175.1327343-CDS-F-distichus_contig96271:640..826Fucus distichus monoicousCDSF-distichus_contig96271 641..826 -
1622931139.8716471-CDS-F-distichus_contig96271:2069..21741622931139.8716471-CDS-F-distichus_contig96271:2069..2174Fucus distichus monoicousCDSF-distichus_contig96271 2070..2174 -
1690886175.1440985-CDS-F-distichus_contig96271:2069..21741690886175.1440985-CDS-F-distichus_contig96271:2069..2174Fucus distichus monoicousCDSF-distichus_contig96271 2070..2174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96271.19078.1prot_F-distichus_contig96271.19078.1Fucus distichus monoicouspolypeptideF-distichus_contig96271 641..2174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96271.19078.1

>prot_F-distichus_contig96271.19078.1 ID=prot_F-distichus_contig96271.19078.1|Name=mRNA_F-distichus_contig96271.19078.1|organism=Fucus distichus monoicous|type=polypeptide|length=97bp
PQNLAKVAASIEARKKKEADAIPEAYGSLARDPQQMELSGAGLKAKRIAD
DMVELTWTTGEEKGNLGFIVNRRKGKTEKWEEIASFKNFPPLNSKG*
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mRNA from alignment at F-distichus_contig96271:641..2174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96271.19078.1 ID=mRNA_F-distichus_contig96271.19078.1|Name=mRNA_F-distichus_contig96271.19078.1|organism=Fucus distichus monoicous|type=mRNA|length=1534bp|location=Sequence derived from alignment at F-distichus_contig96271:641..2174- (Fucus distichus monoicous)
CCACAGAACCTTGCCAAGGTTGCGGCCTCGATCGAAGCCCGCAAGAAGAA
GGAAGCGGACGCGATCCCCGAAGCGTACGGATCTCTGGCGCGCGATCCAC
AGCAGGTCGGGATGTGTTTGTGTGTGTGTGTGTATTTATTGAATTGCGCA
TAACCGCGCAATGTGTGTGCGTGCGTGTGAGTGTGTGTGTATTTATTGAA
TTGCACATAACCGCGCAATCCGGCCCTGTCATCCCAGTCATTCTATGCCA
CTCGCATTGATCCTCCCGAGGGGGTGGTGTGTGTGTGTGTGTGTGTGTGT
GTATTTATTAAATTGCACATAACCGCGTAATCCGGCCCTGTCATCCTAGC
CATTCTATGCCACTTGCATTGATCCTCCCAAGGGGGGGATCAATGATCGT
GTGTGTGTGTGTGTGTTAATTAAATTGCACATAACCGCGCAATCCGGCCC
TGTAATCTACTCATTCTATGCTACTGCATGTAACCCACCTGGGGATTTCT
TCTCGTAAAAATATTCATGGATCATGGATCACGTTAGAAATGCGCGTACA
TATAGCTACAAGTGTGTGTGTGTGTATGTCTGTGTGCGCGTATATTATGG
AATTACACATACCAGCCCTGTCATCATATGAATATTAGTAGTCATTATTC
TATGCTACTCGTATTTCTTCTCCCGAGGAGGGATCGATGATACGTCGGTT
TGTTTTTGTTTTGTGAGTTTGTGTTTGTGCCCCATGGAAGTCTCTAAACT
CTCCCTCAAGGCGCGTTTGTATGCTCGTTCACTCGGAAGCATGAAGCCAA
TACTCAGAAACACAGAACTCTTTTTTTACATATATGTAAATATTGCAGTG
TCCGGTCGCCCCGGTGGTTCAGTTGGTAACCTCGAAACCTTCTGACGTTG
GAACGTGAGTTCGAATCTCGGTGCAGTCTCACGGACTGGGATTTTTCCTC
ACACAAAATTCGACTTCGCTGTCGACGAGGGAGAGGGACGGCTGAATCCT
TCTCGTGAGAAAAATCAAGGCAAGCATCGCAGAAGGAAGGTGGAGTAATC
CTGTGTGATCTTCCTCCTGTGTGACTCCGGCTGGTGCGTCCACACGCCTG
ACGTCCACAATAAATGGGACGACAACGCACACACACATACACACACACAC
ACACACACACAGTGTCTCGGACATGCTTGTGTGTTTGGAAAAGCCTGGCG
GGCTACCCCCCCCCCCTACCCCCATCTTCCTTTTGCATACGGGATGCATT
TCCCAATAGGCAAGGGGCTGCCGCTCTACGGTACGCTTGTCCCGCCCCTA
TACGCCCGCGCATCTTCATCGTCTATGGAAACCCTTCCCTCGGCGCAGAT
GGAGCTCTCCGGAGCGGGCTTGAAGGCCAAGAGAATCGCGGACGATATGG
TGGAGCTGACGTGGACAACTGGGGAGGAGAAGGGCAACTTGGGGTTCATC
GTCAACAGGAGGAAGGGAAAGACCGAAAAATGGGAGGAGATCGCCTCGTT
TAAGAACTTCCCGCCGCTGAACTCCAAGGGGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig96271:641..2174-

>mRNA_F-distichus_contig96271.19078.1 ID=mRNA_F-distichus_contig96271.19078.1|Name=mRNA_F-distichus_contig96271.19078.1|organism=Fucus distichus monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at F-distichus_contig96271:641..2174- (Fucus distichus monoicous)
CCACAGAACCTTGCCAAGGTTGCGGCCTCGATCGAAGCCCGCAAGAAGAA
GGAAGCGGACGCGATCCCCGAAGCGTACGGATCTCTGGCGCGCGATCCAC
AGCAGCCACAGAACCTTGCCAAGGTTGCGGCCTCGATCGAAGCCCGCAAG
AAGAAGGAAGCGGACGCGATCCCCGAAGCGTACGGATCTCTGGCGCGCGA
TCCACAGCAGATGGAGCTCTCCGGAGCGGGCTTGAAGGCCAAGAGAATCG
CGGACGATATGGTGGAGCTGACGTGGACAACTGGGGAGGAGAAGGGCAAC
TTGGGGTTCATCGTCAACAGGAGGAAGGGAAAGACCGAAAAATGGGAGGA
GATCGCCTCGTTTAAGAACTTCCCGCCGCTGAACTCCAAGGGGTAAATGG
AGCTCTCCGGAGCGGGCTTGAAGGCCAAGAGAATCGCGGACGATATGGTG
GAGCTGACGTGGACAACTGGGGAGGAGAAGGGCAACTTGGGGTTCATCGT
CAACAGGAGGAAGGGAAAGACCGAAAAATGGGAGGAGATCGCCTCGTTTA
AGAACTTCCCGCCGCTGAACTCCAAGGGGTAA
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