mRNA_F-distichus_contig96070.19064.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96070.19064.1
Unique NamemRNA_F-distichus_contig96070.19064.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KD83_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD83_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.420e-14
Identity = 41/82 (50.00%), Postives = 47/82 (57.32%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L +  DG +  DP +RPL D PLGK    VL  LL     L  +L+GSGV +AMDNYF S  L  CL    IFAVGT R  R
Sbjct:   14 LINSIDGSFKGDPSLRPLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHDIFAVGTCRSPR 95
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KQ69_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ69_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.090e-12
Identity = 40/82 (48.78%), Postives = 46/82 (56.10%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L +  D  +  DP +RPL D PLGK    VL  LL     L  +L+GSGV +AMDNYF S  L  CL    IFAVGT R  R
Sbjct:   38 LINSIDRSFKGDPSLRPLEDCPLGKTTRHVLHVLLEECETLRGRLVGSGVFIAMDNYFTSPTLFACLASHDIFAVGTCRSPR 119
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.490e-11
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L +  DG +  DP +R L D PLGK    VL  LL     L  +L+GSGV +AMDNYF S  L  CL   +IFAVGT R  R
Sbjct:  149 LINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPR 230
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.940e-11
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L S  DGG   DP++RP  D PLG+    VL  LL     L +++ GSGV +AMDNYF S  L  CL    IFAVGT R  R
Sbjct:  158 LTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADR 239
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-11
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L S  DGG   DP++RP  D PLG+    VL  LL     L +++ GSGV +AMDNYF S  L  CL    IFAVGT R  R
Sbjct:  441 LTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADR 522
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.630e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = -1 
Query:  244 DGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 474
            DGG++ D ++RP A  PLG+    VL  LL + P  +++++GSG+ VAMDN+F    L  CL    IFAVGT R +R
Sbjct:   71 DGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNR 147
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.980e-11
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L S  DGG   DP++RP  D PLG+    VL  LL     L +++ GSGV +AMDNYF S  +  CL    IFAVGT R  R
Sbjct:  172 LTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADR 253
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.990e-10
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
              S  DGG   DP++R   D PLG+    VL  LL +  +  +++ GSGV +AMDNYF S  L  CL    IFAVGT R +R
Sbjct:   14 FVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNR 95
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5KVX6_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.230e-10
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = -1 
Query:  253 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTAR 489
            L S  DGG   DP++RP  D PL +    VL  LL     L +++ GSGV +AMDNYF S  L  CL    IFAVGT R
Sbjct:  267 LTSSVDGGMKGDPKLRPYMDCPLDRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLLECLASHDIFAVGTCR 345
[Close]
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Match: A0A6H5JVE2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.530e-10
Identity = 38/82 (46.34%), Postives = 44/82 (53.66%), Query Frame = -1 
Query:  244 LASYQDGGWTKDPEMRPLADSPLGKIVDLVLTRLLVSTPELAEQLIGSGVKVAMDNYFISGLLSLCLLKSKIFAVGTARKSR 489
            L +  DG +  DP + PL D PLGK    VL  LL     L  +L+GSGV +AM NYF S  L  CL    IFAV T R  R
Sbjct:  122 LINSIDGSFKGDPSLGPLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMANYFTSPTLFACLASHDIFAVATCRSPR 203
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96070.19064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KD83_9PHAE3.420e-1450.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQ69_9PHAE1.090e-1248.78DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KMF5_9PHAE1.490e-1148.78DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE1.940e-1148.78DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE2.200e-1148.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG44_9PHAE3.630e-1145.45DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KJJ0_9PHAE6.980e-1147.56DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCK7_9PHAE2.990e-1045.12DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KVX6_9PHAE5.230e-1048.10DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JVE2_9PHAE9.530e-1046.34DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96070contigF-distichus_contig96070:1702..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.5004683-CDS-F-distichus_contig96070:1701..21901622931138.5004683-CDS-F-distichus_contig96070:1701..2190Fucus distichus monoicousCDSF-distichus_contig96070 1702..2190 +
1690886174.4960175-CDS-F-distichus_contig96070:1701..21901690886174.4960175-CDS-F-distichus_contig96070:1701..2190Fucus distichus monoicousCDSF-distichus_contig96070 1702..2190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96070.19064.1prot_F-distichus_contig96070.19064.1Fucus distichus monoicouspolypeptideF-distichus_contig96070 1702..2190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96070.19064.1

>prot_F-distichus_contig96070.19064.1 ID=prot_F-distichus_contig96070.19064.1|Name=mRNA_F-distichus_contig96070.19064.1|organism=Fucus distichus monoicous|type=polypeptide|length=163bp
AELPVPDLLLDVVGALASLAASQKLGLGNSPCFAGHDRRIRQAFRPHPFQ
LLVYFLFRDLRPHPPEKESVCYRHLFHGVIFPTFSCGSHGEDFALQQTEG
EEPRNKVVIHRHLDPRANQLLGQLRRAYQQPREHQVDNLPQRRVSKRPHL
WVLCPSTILIAR*
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mRNA from alignment at F-distichus_contig96070:1702..2190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96070.19064.1 ID=mRNA_F-distichus_contig96070.19064.1|Name=mRNA_F-distichus_contig96070.19064.1|organism=Fucus distichus monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at F-distichus_contig96070:1702..2190+ (Fucus distichus monoicous)
GCTGAGCTTCCGGTCCCAGACCTCCTTCTCGATGTTGTGGGCGCGCTCGC
AAGTCTCGCGGCATCTCAGAAGCTCGGCCTTGGTAACTCCCCTTGCTTCG
CCGGACACGACCGCCGTATTAGGCAGGCTTTCAGGCCCCATCCTTTCCAA
CTCCTGGTCTATTTTCTCTTTCGTGACCTCCGCCCACATCCGCCGGAGAA
GGAAAGTGTTTGTTACAGACACTTGTTCCATGGAGTCATTTTTCCGACTT
TTTCGTGCGGTTCCCACGGCGAAGATTTTGCTCTTCAGCAAACAGAGGGA
GAGGAGCCCAGAAATAAAGTAGTTATCCATCGCCACCTTGACCCCCGAGC
CAATCAGCTGCTCGGCCAACTCCGGCGTGCTTACCAGCAACCTCGTGAGC
ACCAAGTCGACAATCTTCCCCAACGGCGAGTCAGCAAGCGGCCGCATCTC
TGGGTCCTTTGTCCATCCACCATCTTGATAGCTCGCTAG
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Coding sequence (CDS) from alignment at F-distichus_contig96070:1702..2190+

>mRNA_F-distichus_contig96070.19064.1 ID=mRNA_F-distichus_contig96070.19064.1|Name=mRNA_F-distichus_contig96070.19064.1|organism=Fucus distichus monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at F-distichus_contig96070:1702..2190+ (Fucus distichus monoicous)
GCTGAGCTTCCGGTCCCAGACCTCCTTCTCGATGTTGTGGGCGCGCTCGC
AAGTCTCGCGGCATCTCAGAAGCTCGGCCTTGGTAACTCCCCTTGCTTCG
CCGGACACGACCGCCGTATTAGGCAGGCTTTCAGGCCCCATCCTTTCCAA
CTCCTGGTCTATTTTCTCTTTCGTGACCTCCGCCCACATCCGCCGGAGAA
GGAAAGTGTTTGTTACAGACACTTGTTCCATGGAGTCATTTTTCCGACTT
TTTCGTGCGGTTCCCACGGCGAAGATTTTGCTCTTCAGCAAACAGAGGGA
GAGGAGCCCAGAAATAAAGTAGTTATCCATCGCCACCTTGACCCCCGAGC
CAATCAGCTGCTCGGCCAACTCCGGCGTGCTTACCAGCAACCTCGTGAGC
ACCAAGTCGACAATCTTCCCCAACGGCGAGTCAGCAAGCGGCCGCATCTC
TGGGTCCTTTGTCCATCCACCATCTTGATAGCTCGCTAGGCTGAGCTTCC
GGTCCCAGACCTCCTTCTCGATGTTGTGGGCGCGCTCGCAAGTCTCGCGG
CATCTCAGAAGCTCGGCCTTGGTAACTCCCCTTGCTTCGCCGGACACGAC
CGCCGTATTAGGCAGGCTTTCAGGCCCCATCCTTTCCAACTCCTGGTCTA
TTTTCTCTTTCGTGACCTCCGCCCACATCCGCCGGAGAAGGAAAGTGTTT
GTTACAGACACTTGTTCCATGGAGTCATTTTTCCGACTTTTTCGTGCGGT
TCCCACGGCGAAGATTTTGCTCTTCAGCAAACAGAGGGAGAGGAGCCCAG
AAATAAAGTAGTTATCCATCGCCACCTTGACCCCCGAGCCAATCAGCTGC
TCGGCCAACTCCGGCGTGCTTACCAGCAACCTCGTGAGCACCAAGTCGAC
AATCTTCCCCAACGGCGAGTCAGCAAGCGGCCGCATCTCTGGGTCCTTTG
TCCATCCACCATCTTGATAGCTCGCTAG
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